XLOC_015980 (upf1)


Basic Information

Item Value
gene id XLOC_015980
gene name upf1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 56168619 ~ 56237133 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031664
tatacatatatatatatatatatacatacaacagttctgtctggttctcaaatctgattggctgatcgctgtgatatatttaagtaatatcagcacccgtacagcctctttacgctttgtgtattactccgcccacatacagccagcaaaaagcagacactacagatctaaagtttaaaagatgcacgctcaactgattaactgtcagcttatgatttgaatccaacgcggaagaaagtagttcctcatacaaaagggtttttaagactctccatgtttgatattgtttttatatacacaattatcccatcaaactgttgtataaacgcaatatcacactcgtagcagtgcgatattgctGTATATCGGCTGTATATATAGTAAAAGtgcaagtaaacaaaaataaagtactgAAGTTATAGGGCTTTTTTTTAATCAACGCATGAGTGACACATGCGTAACAATGCTAGGGGTCTACATAGAAATATATGAAGTGCATAACAGTGTTATATATAAGTAGAGAGACCcaataagtaaaacaaaacaaagtaaaacataaaataataacaaaaacaaatgtttaaacatCACAGTCGTGTGTGGACCAGCAATGTACATTTTTCACTTTACAACAAAATCACTTCACGGTCCTTAAAAAGGGTTAAACgagaaaagaaaaatgtaaataaattacaaatagaaGTCGCGTGTGGACGTAATCACGCTCTTTTGCGCGTCCGTCGCATGGCCCGTGACGTCAGCGCGCGTCGCGCTCTCCCGAGTGGGAGTCGAATCTTCTCCGGAATCGTTTGCTTTCATTTCTGAATCTGCACGAGCCCGCCGCGCGCCGTTTCCTTCTCTTCAcgtacaaccaaaacaaacaaaacaaacgcGCATCGCTCGGCTCCTTTCCTCGCGGGACTATtcgctgtttttgttttttgcgaaATAAAGGGCGTCCAGTGGAGAAGAGAGAATATAAAGATGAGTGTGGAGGCGTACGGGCCGAGCTCGCAGACGCTCACCTTCCTGGACACCGAGGAAGCGGAGCTGCTCGGGGCCGACACGCAGGGCTCCGAGTTCGAGTTTACCGATTTTACGCTGCCCAGCCAGACCCAGACGCAAGGCCAGACACAGAGTCAGCTCGACAACCAGGTGAACGGGCCTGATGGAGTTCTGCCCAATGGAGAAGATGCAGTGGGGAAAACCAGCCAACTTCTGGCCGAGCTGAACTTTGAGGAGGACGAGGAAGACACTTACTACACTAAAGACCTGCCGGTGCACGCCTGCAGCTACTGTGGAATCCATGATCCCGCATGTGTGGTTTACTGCAACACCAGCAAGAAGTGGTTTTGCAACGGCCGCGGCAACACCTCTGGCAGtcATATTGTGAACCACCTGGTGAGGGCCAAATGTAAGGAGGTGACGCTGCATAAGGACGGGCCGCTGGGAGAGACTGTTCTGGAGTGCTACAACTGTGGCTGCCGTAACGTCTTCCTGCTCGGCTTCATCCCTGCGAAAGCAGACTCTGTGGTGGTGCTTCTGTGCAGgcagCCGTGTGCCAGTCAGAGCAGTCTGAAGGACATTAACTGGGACAGCTCTCAATGGCAGCCCCTCATCCAGGACCGATGCTTTCTCTCCTGGCTGGTGAAGATCCCGTCTGAGCAGGAGCAGCTGAGGGCCCGGCAGATCACGGCGCAGCAGATTAACAAACTGGAGGAGCTCTGGAAGGAAAACCCAACAGCGACGCTGGAAGATCTGGAGAAGCCTGGAGTAGATGAGGAGCCGCAGCACGTTCTGCTACGATATGAAGACGCCTATCAGTACCAGAACATTTTTGGTCCACTGGTTAAACTAGAGGCCGACTATGACAAGAAGCTCAAAGAGTCCCAAACTCAAGACAATATAACAGTGAGGTGGGATTTGGGACTGAATAAAAAGCGGATAGCTTATTTCACTCTGCCCAAGACGGATTCAGGTGACATGCGGCTGATGCAAGGAGACGAGATCTGTCTGCGCTATAAAGGAGACATGGCTCCGCTCTGGAAAGGCATCGGACATGTCATCAAAGTCCCGGACAATTATGGAGATGAAATTGCCATCGAGCTGCGCAGCAGTGCTGGTGCACCTGTGGAGGTGCCACATAACTTCCAGGTGGACTTTGTGTGGAAGTCGACATCTTTTGATCGAATGCAGAGCGCCCTGAAGACGTTTGCTGTGGATGAGACCTCTGTGTCAGGCTACATCTACCACAAGCTGCTGGGTCACGAGGTGGAGGACGTGATCATCAAATGCCAGCTACCTAAACGCTTCACTGCGCAGGGCCTGCCAGACCTCAACCACTCGCAGGTTTATGCCGTGAAGACGGTACTCCAGCGGCCCCTCAGTCTGATCCAGGGGCCTCCAGGAACTGGAAAGACGGTCACTTCTGCCACCATCGTCTATCATCTAGCGAGACAGGGCAATGGTCCAGTGCTGGTTTGTGCGCCGAGTAACATCGCTGTGGACCAGCTAACAGAGAAGATCCATCAGACGGGACTGAAGGTGGTTCGTCTGTGTGCTAAGAGTCGTGAGGCCATCGATTCACCTGTGTCTTTCCTGGCTCTGCACAATCAGATCCGCAACATGGACAGCATGCCAGAGTTGCAGAAGCTTCAGCAGCTGAAGGATGAAACTGGCGAGCTTTCGTCCTCTGATGAGAAACGTTACCGTGCTCTCAAACGAACTGCAGAGAGAGAGCTGCTCATGaaTGCAGATGTGATCTGCTGCACATGTGTGGGTGCGGGTGACCCTCGTCTGGCTAAAATGCAGTTCCGCTCCATTCTCATCGATGAAAGCACACAGGCCACGGAGCCCGAGTGCATGGTGCCAGTGGTGCTCGGGGCTAAACAGCTGATTCTGGTCGGTGACCACTGTCAGCTGGGCCCTGTGGTCATGTGTAAGAAAGCAGCGAAAGCAGGCCTTTCTCAGTCTCTGTTCGAGAGGCTGGTGGTGCTGGGCATCAGACCCATCCGTCTGCAGGTGCAGTACCGCATGCACCCGGCGCTCAGTGCTTTCCCATCAAACATCTTCTATGAGGGATCTCTGCAGAACGGGGTCACTGCCGCTGATCGCCTTAAGAAAGGCTTTGACTTCCAGTGGCCCCAGCCTGATAAGCCCATGTTTTTCTACGTGACCCAGGGCCAGGAGGAGATCGCCAGCTCCGGCACCTCATATCTCAACAGGACTGAGGCTGCTAATGTGGAGAAGATCACCACTCGTCTGCTGAAGGCCGGAGCCAAACCTGACCAGATTGGCATCATCACGCCGTATGAGGGCCAGCGCTCTTACCTGGTGCAGTACATGCAGTTCAGCGGCTCATTGCACACCAAACTCTACCAGGAGGTGGAGATCGCCAGTGTGGATGCATTTCAAGGCAGAGAGAAGGACTTCATCATCCTGTCCTGTGTCAGAGCTAATGAACACCAGGGCATCGGCTTCCTGAACGACCCGCGCCGTCTCAATGTGGCACTCACCAGAGCCAGATATGGGGTGATCATTGTGGGCAACCCTAAAGCTCTGTCCAAACAGCCCCTGTGGAACCACCTGCTGAACTACTACAAGGAGCAGAAGGTGCTGGTGGAGGGTCCTCTCAACAACCTGAGGGAGAGTCTCATGCAGTTCAGCAAACCACGCAAACTGGTCAACACCATCAACCCTGGAGCCCGCTTCATGAGTACCGCCATGTATGATGCAAGGGAGGCCATGATTCCTGGATCTGTGTATGATCGCAGCAGCACTGGACGTCCATCTAATATGTACTTCCAGACTCATGATCAGGTGGGCATGATCGGGACGGGCCCAAATCCGATGGGCTCTTTGAACATCCCCATCCCATTCAATCTGGTCATGCCGCCGATGCCTCCGCCTGGGTATCTGGGACAGGTGAACGGACCTGCTGCAGGTCGTGGTGCTCCTAAAGGTAAGACCGGGGGTCGTGGAGGTCGACAGAGGAACCGTGGCACTGGGAATCATGGCAGCGGGCAGCCGAACATGCCCAACAGTCAGGCCAGCCAGGACCTGGTGTCTCAGCCCTTCTCTCAGGGTCCGCTGACCCAGGGCTATATCACCATGAGCCAGCCTTCACAGATGAGCCAGCCGGGCCTGTCCCAGCCGGAGCTCTCACagGACAGCTACCTGGGTGATGAGTTCAAGTCTCAGATGGATGTTGCGCTGTCCCAGGACTCCACCTACCAGGGCGAACGGGCATATCAACACGGAGGAGTGACTGGACTCTCACAGTACTAGAGTGTAAGACATGCTTTATAGCTAACAGCTAACTAAATATTTATGCTAGCTCTGGGCAAAAATCGCCATTAATCAAACCCGAAGTGAAAGTTTGTcgatgtttgtttgtgtgttatataatttgttgtgtttgttttttgttttgttttttctgtgtgACAGGTTGTTGGAACAGGAGCTAGGCCTGTGCTGAGCTTAGTTCATCAGCATTTTAAATATgggtaaatacaaaaaaagaacaaacatgGATGCCCGTTTACCACTGTTACAACTGAAGCACCATGGTGTGAGAGCAACAGGAGAGAATCAAACCAATCACAGGAGGGAGTAAAGCTGGACAGGACGAAAGAGAAAGGCGTGAGCGGCCGAAAAACATCCACCATTGGTGGAGGAGAGGGGGAGACGCAGTGTTCGGAGGAGACCAAACACGAGATCTTCCATCTGCAGCGGTGGAGGAGGAGGGCGGCTCCTGGAGCGCAGGTATGGGTCTGTCCCGTCCCGTCCCATCCCggcctcttctctctctctcgtcAGCCTCAGGCCTGCCCTGCCAACCGAGACGGAGCCAAGATGATGAAGTTCTCTTAAAACTACCTGCAAAAAAAAACACGCTTGCTCTGTCGTCTCCGCGAGCTGAGAGAGGGGGTGACGTATTTAAAGACACAAAGTAATTATAAACGCTTATCAAGCAGCTGATTTTTTGGGAAAATATAAGAGTCGCCCCTCAAAGTTGACATCCGACGTTCAGGTTCTGCCACCGAACATGAGAGAATGGACGAGAGCTTCGCCTTTCatttggatttttcttttttgcGTGCGCGCCGGGTCTCCTAGAAGGTGCTAGGACACTCTGAAGGACGATTCAACTTTGAGGACGTCGTAACGGAGAGCCACTTACGGCGGGTGACTCGCAAAAATAATGGGGGTAGTGAAATAAAAATGGCTTtctcttttcattttaaatgtttcgtCTCCGCAAGGGGGCCGACAAGATCTATCCTTTCCTCTTTTAAAATATGGTTTTtgttcaactagaataaaagcagtgaaCCGCTTGATTTAGACGTGGCTTTTAATATCTTGCTGCAAGCAGACGAtatgtaataataaatgaatcaatcaggGTGGAATCATCGTATGAGAAGGATGTGTCAATCACTGTAGGAAGCCCCGCCCACTGCTGTTTGCGTCCAATCAGGACGCAGTGGTGTTCTTTACATGGCAGAAAGCAGGAGATGGCCGCACCTATGCGAAGGACAGACAGGTGAGATTCTCGCTGTTTTTGCGTCTGACTGTAGGAGGCGCTGTTGCGTCTTTTTGCATCACGATGATGTCAGTGAGAGCGGCGTTTAATACGCCGaccagagctgtgtgtgtgtgagagtgtgtgtgtacgtTTGTGACTGCCCTccctcatcattattattattatttgtgttgtgGTAGttgtagttttctttttttcccctcgtTCTAGTTGCTCATTTGCATTTTTTCCTCCCTTAGTAGCTCATTTTTATTTGTACGATCTGACGTGAAGTTCTCGTAACCTCTCTCAGTGTGGAAATTGCTCTTCTTTGGTTTTGACGGACCCATTCGGAGTTTTATGGCAGCTTTTAACATCTGTTCCGACCGATGCCAGTCGCCTCAACTTTATACTTTTACTTTTGGAGTGTTTATACCTTGCTGTTACTCCATACGCGCAACACTTTTTGACTGTTTAATATTACTGAAGTACCACCGCTCGCATTTTATAGCATcgagcacaatttttttttggtttttcgTTCTCGACCCACAAGACAATCATGATCCGCTTCTCCACAGTTCCCGAGCATGTCAGTGTCTAATATTCTGACTTTTCACACTTTCCAATACTTGGGTTTCCATATTTCCCTCTTCAGATGTAAATATCAGACTTGATAACATCAGCCAAATTGTTGTCAATGACAATGCATTCACGATAAAGCCACGGCGATCCTCATTCTGGTTCTTCTTATGATCGAGTTTATGACTCCGAGATCACCCTTGTGTGAGTTTCTGCTGAGAAAGTTGCATCGGATTTGactgaaatgtacaataaatgaatGTAGTTTACCTTGCATTGAAGAGgaatgagggaaaaaaaagcaTCAGGATATGAAGTATAATTCAGGATTTTGCTTTGTGAAAAAGTTTTCACCCCCCACGGTATGTACTTCTTGTAacgttaaaaataaatgttgcttTCTTTCACCCAATGCAGGTCTGGTTGCTTCATTCGTCCTCTCTGTGATCTTTAAATGTTCTGgggtttttgtctgtttgtaaaTTCATTTTTAACGTGGTGTACATTTTGGTGTTAAAgtaatcttgttgtttttttttctccctaatctGGCTTCTGTGGTAACTGAAAATGAGAAATGCACAATGGGAATAATGTTTACTAACCTTAAAAGTGAGACGTTTATTTGTATTGATCAGAAATTTCATGCTATGTTATTTCTAATGGAAAAGATCTGATGTGGCATTTTCATTAATCAAAATCTCATGTGATCAGACTAATTGGATTTAATAACCTAATAAACTATACAGtcgaaagcagaagtttacatgcactgtataaaagtcacataaccatttaaaaacagtcagatgttaatgtgactaaactttttctcttttaggttaGTCAGGATGATCAAAttagtttctgttctgcttaatagcagaataatgagggatagtttgagaaattgttataaccttTCTGGAATGTCAAGTtgacatacaataagattattctgcctctgaaaaagctcagatgatagtgtcaaggttttggaagtttctgattggctaattgacaacatttgagttaactggaggcacaactgtagaatagtatttaaggaaatcctcaaacacacactgcttccttgtgtgacaacatgggaaaatcatcaagccagaatcaacaaaaaaagtcagattacaataagctaaatgacactgggaaaagactcatgtttggagacatgtcctgtgctctgatggagctaagactgaactgtttggccataatgaccagtgttacatttggaggacaaaggggaaagctgacaagcctagaacaccatcccaactgtgaagtatgggggcggcagcatcatgttgtggggctgtttggctgcaggagggactggtccacttcacagcatagatggcatcatgaagaaagaacattatggagaaatactgaagcaacatctcaagacatcagccaggaaattaaaacttgaccACAattgggtcttccaaacagaccatgaccctaagcacactgccaaattagttaacgtgctttaaggacaacagagtgaatgttttggagtggccatcacaaagccctgatctcaatcctatagaacattAGTGGGCAGAGTTGAAATAGCTTGAGCGAGCAAGACCGCCTACAAATTTGACTCCGTTACaccaatatatatgtgtgtgtgtgtatatatgtgtgtgtgtgtgtgtgtatatatttatatatatatatatatatatatatatatatatatatatagagagagagagagagagagagagagagagatggtctggttcttgaatctgattggctgatagctgtgcaatatcagcactcttacatcctcttcacccttgtgttttactccgcccacatagagtgacagcagatcaataaactcactacagtttgacaaatattgcagctgatggacaacataatgtaccttTGGATTGTTTTAGGTGAGATGATAGTTGTTTAGActgtaactatgcagtttatttattaggATAGGGCCTATTTTAAATACCTAACTTTGGAGATCGGAGCCTTttatactgagcagagcaaagacggttgcaccacaagatggcgacagagtctgcataataagcccttatagGAGGGAAAACAGCGTCTTTTcatatttcaaactacagctgatcaaatcatcacagaacaggtaaatgactttctaagtcgatctctctctctttagtatgttgtagtgctgtatttataccacagtctGGTAGTGTTTCTGAtcgtgtttgctttgctttggctttttaagggttaattattgtgatctcccgattgcaacagagaaatactgagaaatctctgtagactgatggcatttcatgctgttcagcattataatcttaaaatgtcagcaaaatcagctgttttgtagTCACTTTAGAAATTACGCTATAGAGGATCGTTCACTATAGCTCTAAAGTGaagttggtgaattagtaacggtttctgctgttctgacatcagctgc
>TCONS_00031663
tatacatatatatatatatatatacatacaacagttctgtctggttctcaaatctgattggctgatcgctgtgatatatttaagtaatatcagcacccgtacagcctctttacgctttgtgtattactccgcccacatacagccagcaaaaagcagacactacagatctaaagtttaaaagatgcacgctcaactgattaactgtcagcttatgatttgaatccaacgcggaagaaagtagttcctcatacaaaagggtttttaagactctccatgtttgatattgtttttatatacacaattatcccatcaaactgttgtataaacgcaatatcacactcgtagcagtgcgatattgctGTATATCGGCTGTATATATAGTAAAAGtgcaagtaaacaaaaataaagtactgAAGTTATAGGGCTTTTTTTTAATCAACGCATGAGTGACACATGCGTAACAATGCTAGGGGTCTACATAGAAATATATGAAGTGCATAACAGTGTTATATATAAGTAGAGAGACCcaataagtaaaacaaaacaaagtaaaacataaaataataacaaaaacaaatgtttaaacatCACAGTCGTGTGTGGACCAGCAATGTACATTTTTCACTTTACAACAAAATCACTTCACGGTCCTTAAAAAGGGTTAAACgagaaaagaaaaatgtaaataaattacaaatagaaGTCGCGTGTGGACGTAATCACGCTCTTTTGCGCGTCCGTCGCATGGCCCGTGACGTCAGCGCGCGTCGCGCTCTCCCGAGTGGGAGTCGAATCTTCTCCGGAATCGTTTGCTTTCATTTCTGAATCTGCACGAGCCCGCCGCGCGCCGTTTCCTTCTCTTCAcgtacaaccaaaacaaacaaaacaaacgcGCATCGCTCGGCTCCTTTCCTCGCGGGACTATtcgctgtttttgttttttgcgaaATAAAGGGCGTCCAGTGGAGAAGAGAGAATATAAAGATGAGTGTGGAGGCGTACGGGCCGAGCTCGCAGACGCTCACCTTCCTGGACACCGAGGAAGCGGAGCTGCTCGGGGCCGACACGCAGGGCTCCGAGTTCGAGTTTACCGATTTTACGCTGCCCAGCCAGACCCAGACGCAAGGCCAGACACAGAGTCAGCTCGACAACCAGGTGAACGGGCCTGATGGAGTTCTGCCCAATGGAGAAGATGCAGTGGGGAAAACCAGCCAACTTCTGGCCGAGCTGAACTTTGAGGAGGACGAGGAAGACACTTACTACACTAAAGACCTGCCGGTGCACGCCTGCAGCTACTGTGGAATCCATGATCCCGCATGTGTGGTTTACTGCAACACCAGCAAGAAGTGGTTTTGCAACGGCCGCGGCAACACCTCTGGCAGtcATATTGTGAACCACCTGGTGAGGGCCAAATGTAAGGAGGTGACGCTGCATAAGGACGGGCCGCTGGGAGAGACTGTTCTGGAGTGCTACAACTGTGGCTGCCGTAACGTCTTCCTGCTCGGCTTCATCCCTGCGAAAGCAGACTCTGTGGTGGTGCTTCTGTGCAGgcagCCGTGTGCCAGTCAGAGCAGTCTGAAGGACATTAACTGGGACAGCTCTCAATGGCAGCCCCTCATCCAGGACCGATGCTTTCTCTCCTGGCTGGTGAAGATCCCGTCTGAGCAGGAGCAGCTGAGGGCCCGGCAGATCACGGCGCAGCAGATTAACAAACTGGAGGAGCTCTGGAAGGAAAACCCAACAGCGACGCTGGAAGATCTGGAGAAGCCTGGAGTAGATGAGGAGCCGCAGCACGTTCTGCTACGATATGAAGACGCCTATCAGTACCAGAACATTTTTGGTCCACTGGTTAAACTAGAGGCCGACTATGACAAGAAGCTCAAAGAGTCCCAAACTCAAGACAATATAACAGTGAGGTGGGATTTGGGACTGAATAAAAAGCGGATAGCTTATTTCACTCTGCCCAAGACGGATTCAGGTGACATGCGGCTGATGCAAGGAGACGAGATCTGTCTGCGCTATAAAGGAGACATGGCTCCGCTCTGGAAAGGCATCGGACATGTCATCAAAGTCCCGGACAATTATGGAGATGAAATTGCCATCGAGCTGCGCAGCAGTGCTGGTGCACCTGTGGAGGTGCCACATAACTTCCAGGTGGACTTTGTGTGGAAGTCGACATCTTTTGATCGAATGCAGAGCGCCCTGAAGACGTTTGCTGTGGATGAGACCTCTGTGTCAGGCTACATCTACCACAAGCTGCTGGGTCACGAGGTGGAGGACGTGATCATCAAATGCCAGCTACCTAAACGCTTCACTGCGCAGGGCCTGCCAGACCTCAACCACTCGCAGGTTTATGCCGTGAAGACGGTACTCCAGCGGCCCCTCAGTCTGATCCAGGGGCCTCCAGGAACTGGAAAGACGGTCACTTCTGCCACCATCGTCTATCATCTAGCGAGACAGGGCAATGGTCCAGTGCTGGTTTGTGCGCCGAGTAACATCGCTGTGGACCAGCTAACAGAGAAGATCCATCAGACGGGACTGAAGGTGGTTCGTCTGTGTGCTAAGAGTCGTGAGGCCATCGATTCACCTGTGTCTTTCCTGGCTCTGCACAATCAGATCCGCAACATGGACAGCATGCCAGAGTTGCAGAAGCTTCAGCAGCTGAAGGATGAAACTGGCGAGCTTTCGTCCTCTGATGAGAAACGTTACCGTGCTCTCAAACGAACTGCAGAGAGAGAGCTGCTCATGaaTGCAGATGTGATCTGCTGCACATGTGTGGGTGCGGGTGACCCTCGTCTGGCTAAAATGCAGTTCCGCTCCATTCTCATCGATGAAAGCACACAGGCCACGGAGCCCGAGTGCATGGTGCCAGTGGTGCTCGGGGCTAAACAGCTGATTCTGGTCGGTGACCACTGTCAGCTGGGCCCTGTGGTCATGTGTAAGAAAGCAGCGAAAGCAGGCCTTTCTCAGTCTCTGTTCGAGAGGCTGGTGGTGCTGGGCATCAGACCCATCCGTCTGCAGGTGCAGTACCGCATGCACCCGGCGCTCAGTGCTTTCCCATCAAACATCTTCTATGAGGGATCTCTGCAGAACGGGGTCACTGCCGCTGATCGCCTTAAGAAAGGCTTTGACTTCCAGTGGCCCCAGCCTGATAAGCCCATGTTTTTCTACGTGACCCAGGGCCAGGAGGAGATCGCCAGCTCCGGCACCTCATATCTCAACAGGACTGAGGCTGCTAATGTGGAGAAGATCACCACTCGTCTGCTGAAGGCCGGAGCCAAACCTGACCAGATTGGCATCATCACGCCGTATGAGGGCCAGCGCTCTTACCTGGTGCAGTACATGCAGTTCAGCGGCTCATTGCACACCAAACTCTACCAGGAGGTGGAGATCGCCAGTGTGGATGCATTTCAAGGCAGAGAGAAGGACTTCATCATCCTGTCCTGTGTCAGAGCTAATGAACACCAGGGCATCGGCTTCCTGAACGACCCGCGCCGTCTCAATGTGGCACTCACCAGAGCCAGATATGGGGTGATCATTGTGGGCAACCCTAAAGCTCTGTCCAAACAGCCCCTGTGGAACCACCTGCTGAACTACTACAAGGAGCAGAAGGTGCTGGTGGAGGGTCCTCTCAACAACCTGAGGGAGAGTCTCATGCAGTTCAGCAAACCACGCAAACTGGTCAACACCATCAACCCTGGAGCCCGCTTCATGAGTACCGCCATGTATGATGCAAGGGAGGCCATGATTCCTGGATCTGTGTATGATCGCAGCAGCACTGGACGTCCATCTAATATGTACTTCCAGACTCATGATCAGGTGGGCATGATCGGGACGGGCCCAAATCCGATGGGCTCTTTGAACATCCCCATCCCATTCAATCTGGTCATGCCGCCGATGCCTCCGCCTGGGTATCTGGGACAGGTGAACGGACCTGCTGCAGGTCGTGGTGCTCCTAAAGGTAAGACCGGGGGTCGTGGAGGTCGACAGAGGAACCGTGGCACTGGGAATCATGGCAGCGGGCAGCCGAACATGCCCAACAGTCAGGCCAGCCAGGACCTGGTGTCTCAGCCCTTCTCTCAGGGTCCGCTGACCCAGGGCTATATCACCATGAGCCAGCCTTCACAGATGAGCCAGCCGGGCCTGTCCCAGCCGGAGCTCTCACagGACAGCTACCTGGGTGATGAGTTCAAGTCTCAGATGGATGTTGCGCTGTCCCAGGACTCCACCTACCAGGGCGAACGGGCATATCAACACGGAGGAGTGACTGGACTCTCACAGTACTAGAGTGTTGTTGGAACAGGAGCTAGGCCTGTGCTGAGCTTAGTTCATCAGCATTTTAAATATgggtaaatacaaaaaaagaacaaacatgGATGCCCGTTTACCACTGTTACAACTGAAGCACCATGGTGTGAGAGCAACAGGAGAGAATCAAACCAATCACAGGAGGGAGTAAAGCTGGACAGGACGAAAGAGAAAGGCGTGAGCGGCCGAAAAACATCCACCATTGGTGGAGGAGAGGGGGAGACGCAGTGTTCGGAGGAGACCAAACACGAGATCTTCCATCTGCAGCGGTGGAGGAGGAGGGCGGCTCCTGGAGCGCAGGTATGGGTCTGTCCCGTCCCGTCCCATCCCggcctcttctctctctctcgtcAGCCTCAGGCCTGCCCTGCCAACCGAGACGGAGCCAAGATGATGAAGTTCTCTTAAAACTACCTGCAAAAAAAAACACGCTTGCTCTGTCGTCTCCGCGAGCTGAGAGAGGGGGTGACGTATTTAAAGACACAAAGTAATTATAAACGCTTATCAAGCAGCTGATTTTTTGGGAAAATATAAGAGTCGCCCCTCAAAGTTGACATCCGACGTTCAGGTTCTGCCACCGAACATGAGAGAATGGACGAGAGCTTCGCCTTTCatttggatttttcttttttgcGTGCGCGCCGGGTCTCCTAGAAGGTGCTAGGACACTCTGAAGGACGATTCAACTTTGAGGACGTCGTAACGGAGAGCCACTTACGGCGGGTGACTCGCAAAAATAATGGGGGTAGTGAAATAAAAATGGCTTtctcttttcattttaaatgtttcgtCTCCGCAAGGGGGCCGACAAGATCTATCCTTTCCTCTTTTAAAATATGGTTTTtgttcaactagaataaaagcagtgaaCCGCTTGATTTAGACGTGGCTTTTAATATCTTGCTGCAAGCAGACGAtatgtaataataaatgaatcaatcaggGTGGAATCATCGTATGAGAAGGATGTGTCAATCACTGTAGGAAGCCCCGCCCACTGCTGTTTGCGTCCAATCAGGACGCAGTGGTGTTCTTTACATGGCAGAAAGCAGGAGATGGCCGCACCTATGCGAAGGACAGACAGGTGAGATTCTCGCTGTTTTTGCGTCTGACTGTAGGAGGCGCTGTTGCGTCTTTTTGCATCACGATGATGTCAGTGAGAGCGGCGTTTAATACGCCGaccagagctgtgtgtgtgtgagagtgtgtgtgtacgtTTGTGACTGCCCTccctcatcattattattattatttgtgttgtgGTAGttgtagttttctttttttcccctcgtTCTAGTTGCTCATTTGCATTTTTTCCTCCCTTAGTAGCTCATTTTTATTTGTACGATCTGACGTGAAGTTCTCGTAACCTCTCTCAGTGTGGAAATTGCTCTTCTTTGGTTTTGACGGACCCATTCGGAGTTTTATGGCAGCTTTTAACATCTGTTCCGACCGATGCCAGTCGCCTCAACTTTATACTTTTACTTTTGGAGTGTTTATACCTTGCTGTTACTCCATACGCGCAACACTTTTTGACTGTTTAATATTACTGAAGTACCACCGCTCGCATTTTATAGCATcgagcacaatttttttttggtttttcgTTCTCGACCCACAAGACAATCATGATCCGCTTCTCCACAGTTCCCGAGCATGTCAGTGTCTAATATTCTGACTTTTCACACTTTCCAATACTTGGGTTTCCATATTTCCCTCTTCAGATGTAAATATCAGACTTGATAACATCAGCCAAATTGTTGTCAATGACAATGCATTCACGATAAAGCCACGGCGATCCTCATTCTGGTTCTTCTTATGATCGAGTTTATGACTCCGAGATCACCCTTGTGTGAGTTTCTGCTGAGAAAGTTGCATCGGATTTGactgaaatgtacaataaatgaatGTAGTTTACCTTGCATTGAAGAGgaatgagggaaaaaaaagcaTCAGGATATGAAGTATAATTCAGGATTTTGCTTTGTGAAAAAGTTTTCACCCCCCACGGTATGTACTTCTTGTAacgttaaaaataaatgttgcttTCTTTCACCCAATGCAGGTCTGGTTGCTTCATTCGTCCTCTCTGTGATCTTTAAATGTTCTGgggtttttgtctgtttgtaaaTTCATTTTTAACGTGGTGTACATTTTGGTGTTAAAgtaatcttgttgtttttttttctccctaatctGGCTTCTGTGGTAACTGAAAATGAGAAATGCACAATGGGAATAATGTTTACTAACCTTAAAAGTGAGACGTTTATTTGTATTGATCAGAAATTTCATGCTATGTTATTTCTAATGGAAAAGATCTGATGTGGCATTTTCATTAATCAAAATCTCATGTGATCAGACTAATTGGATTTAATAACCTAATAAACTATACAGtcgaaagcagaagtttacatgcactgtataaaagtcacataaccatttaaaaacagtcagatgttaatgtgactaaactttttctcttttaggttaGTCAGGATGATCAAAttagtttctgttctgcttaatagcagaataatgagggatagtttgagaaattgttataaccttTCTGGAATGTCAAGTtgacatacaataagattattctgcctctgaaaaagctcagatgatagtgtcaaggttttggaagtttctgattggctaattgacaacatttgagttaactggaggcacaactgtagaatagtatttaaggaaatcctcaaacacacactgcttccttgtgtgacaacatgggaaaatcatcaagccagaatcaacaaaaaaagtcagattacaataagctaaatgacactgggaaaagactcatgtttggagacatgtcctgtgctctgatggagctaagactgaactgtttggccataatgaccagtgttacatttggaggacaaaggggaaagctgacaagcctagaacaccatcccaactgtgaagtatgggggcggcagcatcatgttgtggggctgtttggctgcaggagggactggtccacttcacagcatagatggcatcatgaagaaagaacattatggagaaatactgaagcaacatctcaagacatcagccaggaaattaaaacttgaccACAattgggtcttccaaacagaccatgaccctaagcacactgccaaattagttaacgtgctttaaggacaacagagtgaatgttttggagtggccatcacaaagccctgatctcaatcctatagaacattAGTGGGCAGAGTTGAAATAGCTTGAGCGAGCAAGACCGCCTACAAATTTGACTCCGTTACaccaatatatatgtgtgtgtgtgtatatatgtgtgtgtgtgtgtgtgtatatatttatatatatatatatatatatatatatatatatatatatagagagagagagagagagagagagagagagatggtctggttcttgaatctgattggctgatagctgtgcaatatcagcactcttacatcctcttcacccttgtgttttactccgcccacatagagtgacagcagatcaataaactcactacagtttgacaaatattgcagctgatggacaacataatgtaccttTGGATTGTTTTAGGTGAGATGATAGTTGTTTAGActgtaactatgcagtttatttattaggATAGGGCCTATTTTAAATACCTAACTTTGGAGATCGGAGCCTTttatactgagcagagcaaagacggttgcaccacaagatggcgacagagtctgcataataagcccttatagGAGGGAAAACAGCGTCTTTTcatatttcaaactacagctgatcaaatcatcacagaacaggtaaatgactttctaagtcgatctctctctctttagtatgttgtagtgctgtatttataccacagtctGGTAGTGTTTCTGAtcgtgtttgctttgctttggctttttaagggttaattattgtgatctcccgattgcaacagagaaatactgagaaatctctgtagactgatggcatttcatgctgttcagcattataatcttaaaatgtcagcaaaatcagctgttttgtagTCACTTTAGAAATTACGCTATAGAGGATCGTTCACTATAGCTCTAAAGTGaagttggtgaattagtaacggtttctgctgttctgacatcagctgc
>TCONS_00031665
CTGATCGCCTTAAGAAAGGCTTTGACTTCCAGTGGCCCCAGCCTGATAAGCCCATGTTTTTCTACGTGACCCAGGGCCAGGAGGAGATCGCCAGCTCCGGCACCTCATATCTCAACAGGACTGAGGCTGCTAATGTGGAGAAGATCACCACTCGTCTGCTGAAGGCCGGAGCCAAACCTGACCAGATTGGCATCATCACGCCGTATGAGGGCCAGCGCTCTTACCTGGTGCAGTACATGCAGTTCAGCGGCTCATTGCACACCAAACTCTACCAGGAGGTGGAGATCGCCAGTGTGGATGCATTTCAAGGCAGAGAGAAGGACTTCATCATCCTGTCCTGTGTCAGAGCTAATGAACACCAGGGCATCGGCTTCCTGAACGACCCGCGCCGTCTCAATGTGGCACTCACCAGAGCCAGATATGGGGTGATCATTGTGGGCAACCCTAAAGCTCTGTCCAAACAGCCCCTGTGGAACCACCTGCTGAACTACTACAAGGAGCAGAAGGTGCTGGTGGAGGGTCCTCTCAACAACCTGAGGGAGAGTCTCATGCAGTTCAGCAAACCACGCAAACTGGTCAACACCATCAACCCTGGAGCCCGCTTCATGAGTACCGCCATGTATGATGCAAGGGAGGCCATGATTCCTGGATCTGTGTATGATCGCAGCAGCACTGGACGTCCATCTAATATGTACTTCCAGACTCATGATCAGGTGGGCATGATCGGGACGGGCCCAAATCCGATGGGCTCTTTGAACATCCCCATCCCATTCAATCTGGTCATGCCGCCGATGCCTCCGCCTGGGTATCTGGGACAGGTGAACGGACCTGCTGCAGGTCGTGGTGCTCCTAAAGGTAAGACCGGGGGTCGTGGAGGTCGACAGAGGAACCGTGGCACTGGGAATCATGGCAGCGGGCAGCCGAACATGCCCAACAGTCAGGCCAGCCAGGACCTGGTGTCTCAGCCCTTCTCTCAGGGTCCGCTGACCCAGGGCTATATCACCATGAGCCAGCCTTCACAGATGAGCCAGCCGGGCCTGTCCCAGCCGGAGCTCTCACagGACAGCTACCTGGGTGATGAGTTCAAGTCTCAGATGGATGTTGCGCTGTCCCAGGACTCCACCTACCAGGGCGAACGGGCATATCAACACGGAGGAGTGACTGGACTCTCACAGTACTAGAGTGTTGTTGGAACAGGAGCTAGGCCTGTGCTGAGCTTAGTTCATCAGCATTTTAAATATgggtaaatacaaaaaaagaacaaacatgGATGCCCGTTTACCACTGTTACAACTGAAGCACCATGGTGTGAGAGCAACAGGAGAGAATCAAACCAATCACAGGAGGGAGTAAAGCTGGACAGGACGAAAGAGAAAGGCGTGAGCGGCCGAAAAACATCCACCATTGGTGGAGGAGAGGGGGAGACGCAGTGTTCGGAGGAGACCAAACACGAGATCTTCCATCTGCAGCGGTGGAGGAGGAGGGCGGCTCCTGGAGCGCAGGTATGGGTCTGTCCCGTCCCGTCCCATCCCggcctcttctctctctctcgtcAGCCTCAGGCCTGCCCTGCCAACCGAGACGGAGCCAAGATGATGAAGTTCTCTTAAAACTACCTGCAAAAAAAAACACGCTTGCTCTGTCGTCTCCGCGAGCTGAGAGAGGGGGTGACGTATTTAAAGACACAAAGTAATTATAAACGCTTATCAAGCAGCTGATTTTTTGGGAAAATATAAGAGTCGCCCCTCAAAGTTGACATCCGACGTTCAGGTTCTGCCACCGAACATGAGAGAATGGACGAGAGCTTCGCCTTTCatttggatttttcttttttgcGTGCGCGCCGGGTCTCCTAGAAGGTGCTAGGACACTCTGAAGGACGATTCAACTTTGAGGACGTCGTAACGGAGAGCCACTTACGGCGGGTGACTCGCAAAAATAATGGGGGTAGTGAAATAAAAATGGCTTtctcttttcattttaaatgtttcgtCTCCGCAAGGGGGCCGACAAGATCTATCCTTTCCTCTTTTAAAATATGGTTTTtgttcaactagaataaaagcagtgaaCCGCTTGATTTAGACGTGGCTTTTAATATCTTGCTGCAAGCAGACGAtatgtaataataaatgaatcaatcaggGTGGAATCATCGTATGAGAAGGATGTGTCAATCACTGTAGGAAGCCCCGCCCACTGCTGTTTGCGTCCAATCAGGACGCAGTGGTGTTCTTTACATGGCAGAAAGCAGGAGATGGCCGCACCTATGCGAAGGACAGACAGGTGAGATTCTCGCTGTTTTTGCGTCTGACTGTAGGAGGCGCTGTTGCGTCTTTTTGCATCACGATGATGTCAGTGAGAGCGGCGTTTAATACGCCGaccagagctgtgtgtgtgtgagagtgtgtgtgtacgtTTGTGACTGCCCTccctcatcattattattattatttgtgttgtgGTAGttgtagttttctttttttcccctcgtTCTAGTTGCTCATTTGCATTTTTTCCTCCCTTAGTAGCTCATTTTTATTTGTACGATCTGACGTGAAGTTCTCGTAACCTCTCTCAGTGTGGAAATTGCTCTTCTTTGGTTTTGACGGACCCATTCGGAGTTTTATGGCAGCTTTTAACATCTGTTCCGACCGATGCCAGTCGCCTCAACTTTATACTTTTACTTTTGGAGTGTTTATACCTTGCTGTTACTCCATACGCGCAACACTTTTTGACTGTTTAATATTACTGAAGTACCACCGCTCGCATTTTATAGCATcgagcacaatttttttttggtttttcgTTCTCGACCCACAAGACAATCATGATCCGCTTCTCCACAGTTCCCGAGCATGTCAGTGTCTAATATTCTGACTTTTCACACTTTCCAATACTTGGGTTTCCATATTTCCCTCTTCAGATGTAAATATCAGACTTGATAACATCAGCCAAATTGTTGTCAATGACAATGCATTCACGATAAAGCCACGGCGATCCTCATTCTGGTTCTTCTTATGATCGAGTTTATGACTCCGAGATCACCCTTGTGTGAGTTTCTGCTGAGAAAGTTGCATCGGATTTGactgaaatgtacaataaatgaatGTAGTTTACCTTGCATTGAAGAGgaatgagggaaaaaaaagcaTCAGGATATGAAGTATAATTCAGGATTTTGCTTTGTGAAAAAGTTTTCACCCCCCACGGTATGTACTTCTTGTAacgttaaaaataaatgttgcttTCTTTCACCC

Function

symbol description
upf1 Predicted to enable RNA binding activity and RNA helicase activity. Involved in nuclear-transcribed mRNA catabolic process. Acts upstream of or within chordate embryonic development and nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Predicted to be active in cytoplasm. Orthologous to human UPF1 (UPF1 RNA helicase and ATPase).

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0000956 nuclear-transcribed mRNA catabolic process biological_process
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03015 mRNA surveillance pathway
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-040426-2836 Predicted to enable RNA binding activity and RNA helicase activity. Involved in nuclear-transcribed mRNA catabolic process. Acts upstream of or within chordate embryonic development and nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Predicted to be active in cytoplasm. Orthologous to human UPF1 (UPF1 RNA helicase and ATPase).

Ensembl:

ensembl_id ENSDARG00000016302

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031664 False 8615 mRNA 0.46 23 56168619 56237133
TCONS_00031663 False 8456 mRNA 0.46 24 56168619 56237133
TCONS_00031665 True 3260 mRNA 0.49 9 56213694 56235043

Neighbor

gene id symbol gene type direction distance location
XLOC_015979 pgpep1 coding upstream 6012 56139941 ~ 56162607 (+)
XLOC_015978 NA coding upstream 38176 56125003 ~ 56130443 (+)
XLOC_015977 loxl5b coding upstream 126729 56012016 ~ 56041890 (+)
XLOC_015976 nmrk2 coding upstream 178290 55982300 ~ 55990329 (+)
XLOC_015975 atcayb coding upstream 197649 55914699 ~ 55970970 (+)
XLOC_015982 homer3a coding downstream 28658 56265791 ~ 56283159 (+)
XLOC_015983 NA coding downstream 87201 56324334 ~ 56335388 (+)
XLOC_015984 NA coding downstream 92408 56329541 ~ 56331424 (+)
XLOC_015985 rab11bb coding downstream 226034 56463167 ~ 56476990 (+)
XLOC_015986 CU469531.1 coding downstream 250535 56487668 ~ 56493661 (+)
XLOC_015974 NA non-coding upstream 384174 55782537 ~ 55784445 (+)
XLOC_015973 NA non-coding upstream 388582 55777822 ~ 55780037 (+)
XLOC_015971 NA non-coding upstream 565054 55603128 ~ 55603565 (+)
XLOC_015968 NA non-coding upstream 899329 55268020 ~ 55269290 (+)
XLOC_015987 NA non-coding downstream 260001 56497134 ~ 56507389 (+)
XLOC_015988 NA non-coding downstream 345829 56582962 ~ 56583372 (+)

Expression


Co-expression Network