XLOC_015974


Basic Information

Item Value
gene id XLOC_015974
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 55782537 ~ 55784445 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033721
aaaactttggCATTAATTACAAGTCTCGGCATGTAAAAAGGTGGTCGAACATCACAAAACAAGATTTTGCAATTTGACAAGAAATCCAATTTGAACATCGGGGACTTCACAGTGTGTAGACAACTAGTTGATTTTAACGCAAATATAACCACATCCCCTACTGCAGCTCGTTTATTTTCAAGTAACTACAATATGGACGTCGCAAACGTTACCGCCACTGAAAATGTGTACGGTAAAACCAAAAAGACATTGCCGTTATAATAAATAAAGCTGGAAAATAAAAGGAATTGTACTGAATATCTCATTTAGGACATTAAGAACAACCACAGCACATAACTTGTGGCAacagaacacaaactaaaaagCAAAACGTAAATCATCAGTGCCAAAGGAGCATCGCGTCACTGCAAGTTTTGCACTACAGTACAAACATTAACCGGTCCTCATTTACAAAACACAAATGTCAATTGTATGCTTTTCTAGAATCTCATTCCTCAACAGTTCACACACAAACGACTCCATTCTGTTTCGGTTTCAGAAATGAGGTCAATAGTTTGGAGCCCAGCCTGTAACCTGATTAATCTCTtatcaaaaacaacaataacatggTGAAAATCTCATCTTCTATTCCTCATGGCAATATTAAGAATCAACTATTTAAGCTGTGCAACATCCTGGTAACCTTATGTAGTACACCCCAGGCCTGTAACATTAAGCTGGATTAGCCActtaagtttcagtttagtttgcaccaatcAGGTAAGTTTCAGTTcgcacaagaaaatgaatatgtACTCACCCTCATTTGctttcctcaagATTTCTTCTTGtgtgaaagaaactcaaaggtttgaaacatgtGAAGAgcgagtgaatgatgacagaatattgtaggtgaactatccctttaaggcagcTCGACTTCAATTACTCATTGTAAAGcatccacacaattccttcatgttgtcccaacacaaatcgattaagttaactttatcgtttggtaacactttattttgatggtccatttgagcatttgtagactgtctgcttgatatctgctgctaaacagacatttaactgactgtaagacACTTTGTAAGTCCATGTTAACTAACACTGACcgtttacttataatctaatgagaattagttgccatgtagatgcaatgtaacttaaattcaacaagcgaaccatcaaaataaagtgaccaatcatttttataaatttaagttgaatgaacataaaacaattaagttggccaaaaaaaaaaaaaaaaagttaaaaactgtgtTGGTTCGACTCGtcataaataagtagtttgaacaaacaggtAAAGTCATTATGTGCCATGGTATTATGTAGAAGCTGAGCTACAAAATGCAgaattggtgcaaactaaactaaaacataaCTGCCTATAAAGCTAATCCGGCTTCCTGATACAGACTGTTAATCTAACTTAATCCAATTCCTTCAAACTAACAGAAACAACAATTTTGCATACACAAAAGGCACAATAAACTGATCATAGACCAGTTCTTTAAAGGTGTTTCACATGTCGGACCCCGGTACCATAAAGAAacactcaaaaacaaacaaacaaataaaagatgaTATTTAAAGGGACAATTCACATTAAAAAAGAACATTTACCAATTCAAATGAttctaaacttattttttttgttctataaaaacacaaaaaaaagacacTTCAAAGAATGCTCAAAGAATTAACATCCATAGGAGGAgcaaaaaaaatgcaatgcaa

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048513 animal organ development biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0009954 proximal/distal pattern formation biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0003002 regionalization biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048704 embryonic skeletal system morphogenesis biological_process
GO:0048705 skeletal system morphogenesis biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0009790 embryo development biological_process
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033721 True 1773 lncRNA 0.35 2 55782537 55784445

Neighbor

gene id symbol gene type direction distance location
XLOC_015973 NA coding upstream 2500 55777822 ~ 55780037 (+)
XLOC_015972 klf2b coding upstream 109312 55665095 ~ 55673225 (+)
XLOC_015971 NA coding upstream 178972 55603128 ~ 55603565 (+)
XLOC_015970 ap1m1 coding upstream 290222 55429988 ~ 55492315 (+)
XLOC_015969 LPL coding upstream 392205 55365727 ~ 55390332 (+)
XLOC_015975 atcayb coding downstream 130254 55914699 ~ 55970970 (+)
XLOC_015976 nmrk2 coding downstream 197855 55982300 ~ 55990329 (+)
XLOC_015977 loxl5b coding downstream 227571 56012016 ~ 56041890 (+)
XLOC_015978 NA coding downstream 340558 56125003 ~ 56130443 (+)
XLOC_015979 pgpep1 coding downstream 355496 56139941 ~ 56162607 (+)
XLOC_015968 NA non-coding upstream 513247 55268020 ~ 55269290 (+)
XLOC_015960 CABZ01050280.1 non-coding upstream 1334824 54430632 ~ 54447713 (+)
XLOC_015959 NA non-coding upstream 1354599 54425088 ~ 54427938 (+)
XLOC_015981 NA non-coding downstream 387648 56172093 ~ 56172528 (+)
XLOC_015983 NA non-coding downstream 539889 56324334 ~ 56335388 (+)
XLOC_015984 NA non-coding downstream 545096 56329541 ~ 56331424 (+)
XLOC_015986 CU469531.1 non-coding downstream 703223 56487668 ~ 56493661 (+)

Expression


Co-expression Network