XLOC_015960 (CABZ01050280.1)


Basic Information

Item Value
gene id XLOC_015960
gene name CABZ01050280.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 54430632 ~ 54447713 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031630
ATGGAGAGCTCCAATGGCTCCGACACCAAACCGCAGAGCCATCATCCTCAGGTGGAGAAGAAGAGGTTAAACCGCGCGCCGTCCCCTGCCAGACCCGTCCTCAAGGATGTCCACTCGCGGACGGCCAAACCGATCGTGCCAAAATCGCCCAAATTCAACAAGCAGCAAGCGCCGGTGACGCCTCAGAGCCGCGTCCCGAGACGCACCGTCCCGGGCGCGAAGGACAAAACCGCATCAGCACCTGCAAAAAGCAACACCAAGCCCGCCTCAGCGACAAAAAAGCCCGTTAAGGTCACTCAGCATGCAGCATCCGAACCCAAACCGGCCGGTAAGGCTGCGGAGTCCGCCGCTCCGCAGATCACCAAGAGCAAGGGGAGACCTGCCCCCATACGCGTGCCCACCGGACGCGGCGTCTGTCAGACCGACAGCAGCTCGGATTTGTCTGACTGTCCTTCCGAGCCGCTGTCCGACGAGCAGAGGCTGGTCCAGGCCGCCAGCAGCGACGCGGAGTCGGGCAGCGGCTCGGGTTCGAGTGAGCAGGCGGCTGCAGGATCACGGACTGCACCTGCTCCTGCTCCCGTTGCGCGCGCGGACAAACGCAAAGATAATAAAGACGCACAGTTTAAACCCGACGGCAAGGAGATGGAGACGGAGATGGCCCAGGACGAGCTGCTAAGGGAGATCGAAGACCTGCGATCGGAAAATGACTACCTCAAGGATGAAGTGGATGAGCTGCGAGCAGAGATGGAGGAGATCCGGGACAGTTACCTGGAAGAGGAGGTGTACCAGCTGCAAGATCTGCGCCGGGAACTGGACCGCTCCAACAAAAACTGCCGGATCCTCCAGTACCGCCTGCGCAAGGCTGAACAGAAGAGCCTGCGTGTAGCACAGACCGGACATGTGGACGGAGAGCTTCTGCGCGGCCTGGAGCAGGACCTCAAGGTGGCCAAAGATGTATCGGTGCGTCTGCACAATGAACTAGAAACGGTGGAAGACAAGCGAACGCGGGCGGAAGATGAAAACGAGCTGCTCAGGCAAAAGATCATCGAAATCGAGATCTCCAAACAGGCCCTGCATAATGAGCTGGAGAGAGCCAAAGAGGTACTGTACCACAGATCACTGTATTCGAGCAAAAACTTGTTTTTGTGGTAGTAGTGTTGCTATTCTAGATGCTGTGGTGTTATATTTATAGCCATTGCAGGAGCTTTCTGGGTTATTCACAGATGTGTTGTCAACAGTTGTGTTTATAACTGTATATTCTGTTATAACTGCTGATTGCATCTTATGATACTGATATTGGTCAATTGCATTCATGActatcctgtttttttttaactcgttTGCATGTAAAGAAGagttttttaatttaccggtaaagtcgttccggaaatttttctggatatttaccgctatcactgtgtgaaaggggctattgtctcattcttcctgcaaacaagtcttaggGCTCCATTTTagtgatctaggtgcaaagtctgtTTCATTGTCACATTCTCTATTAGAGACAGGTCTGGACTGTAGGTAGGCCAGTCAGcgttaatggtgccatcacagaagttaCCTTTGCaagttatattaaattattttactcaAAATTATTTCACTCTTTTCATGCAGCGGCAAATTATTTTGGTGATAATCTCCAAATGTAAATAACCCAGAATATTATTTGAAGGCATCAAAGACAAACCCAATAATGACCCACAAACGTGCTGCATCACTTCTGTTGAATAAGACGGTTAAAGCGGGACGGCCCGAGGGTTGAGACGCTCCCACCGTGAGTGTGCTGCTTTGAAGTATGGATGAATGCATTAACTTTGAAGCCTGCTGCCGTGTGCATTAATGCATGACAGGCCGTTCGCTGCTTCAGTAATCGGATGCTGAGGAGTTACTCTGGAGTCGCTCAGGTTAATCGAGAGTAATCTGGAAAGATTGAGTCACGGCTGTGTGGAGGAGAAGAACACTGAGTGTGGGGTGTCTTCAAATATGGGGTTGCTTGGgggttctatctatccatctatctatccatgcgTCATGCAatctattaatccatccatccatcaatcattctattatttttagtattgttctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatccatcattctataatatctatttatctattattctatcattctattataatatcgttctatctattcatctgtcaatctgtcattctatccatcaatccatccatccatccatccatccatccatcatccattcatcaaattatttatcattctattattctatatattgttctattgttctatttattgttctttcattctttctatcattctgttgtgttatctatctatctctcctatcattctatctatctatctatcattctacaGTATTATCTTTCAATCTATCGTTCTGTCTATAATTCTATGTATCTATCGTtctatgtatccatccatccatccatccatccatccatcaatctatctgtcATTCTATCCATCTGCCATCGTTCTATCCTTCCATCATTCTATTCATCCACCGATCCATACATCATTCTAaagtatctatccatctattgttctatcattcaattatactatcattctatctatccatctatccgtcattctattaatccatccattcatccaactatacatacatccatccatcgttctatttATCGTTCTATTATTCTATGTATGTTCTATGCTTCATTCTATTTATCCTTTTACTGTTCTATTTATTGTTCTTTCATTCTTCTTATCATTCTGTTGtatgtttttatctatctatccttttatcattctatctattctATCATTCTACAGTATTATCTTTaaatctatcgttctatctgtctgtctgtctattattctatctatcgattgttctatccatccatccatcaatctatcaatctatccttcattctatccatccacccatcctgtCTATCCAGTTCTATTCTTCCATCATTCTACCCATCCACcgatccatccatcattctaaagtatctgtttatctttctatctattgttctatcattctattatactatcgttctatctatccatctatccgtcattctatcaatccatccatccatccatccatccaaccatacacacatacatccaaccatacatgcatacatacatacatacatacatctctTGCTCTATTTATCATtct

Function

GO:

id name namespace
GO:0048468 cell development biological_process
GO:0030154 cell differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0048869 cellular developmental process biological_process
GO:0048666 neuron development biological_process
GO:0007399 nervous system development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0044295 axonal growth cone cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117758

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031630 True 3311 lncRNA 0.43 3 54430632 54447713

Neighbor

gene id symbol gene type direction distance location
XLOC_015959 NA coding upstream 2694 54425088 ~ 54427938 (+)
XLOC_015958 rab12 coding upstream 6996 54387710 ~ 54423636 (+)
XLOC_015957 LO018508.1 coding upstream 77007 54327160 ~ 54353625 (+)
XLOC_015956 CU179656.2 coding upstream 116423 54305610 ~ 54314209 (+)
XLOC_015955 NA coding upstream 160266 54085893 ~ 54270366 (+)
XLOC_015961 mtcl1 coding downstream 34890 54482603 ~ 54509065 (+)
XLOC_015962 ndufv2 coding downstream 193931 54641644 ~ 54690184 (+)
XLOC_015963 ankrd12 coding downstream 248329 54696042 ~ 54786748 (+)
XLOC_015964 twsg1a coding downstream 350976 54798689 ~ 54834764 (+)
XLOC_015965 rnf126 coding downstream 397042 54844755 ~ 54980150 (+)
XLOC_015954 NA non-coding upstream 386841 54042778 ~ 54043791 (+)
XLOC_015951 CU861888.1 non-coding upstream 744444 53686071 ~ 53686188 (+)
XLOC_015968 NA non-coding downstream 820307 55268020 ~ 55269290 (+)
XLOC_015971 NA non-coding downstream 1155415 55603128 ~ 55603565 (+)
XLOC_015973 NA non-coding downstream 1330109 55777822 ~ 55780037 (+)
XLOC_015974 NA non-coding downstream 1334824 55782537 ~ 55784445 (+)
XLOC_015978 NA non-coding downstream 1677290 56125003 ~ 56130443 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000075_00636212_00641437 MTCL1 coding CI01000075 null 635984 ~ 641437 (-)