XLOC_015961 (mtcl1)


Basic Information

Item Value
gene id XLOC_015961
gene name mtcl1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 54482603 ~ 54509065 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00031631
ATGCGTAAAAAGATGGCCAAACTTGGCCGCGAGAAGGATGAACTGGAACAagaattgcagaagtataaatcagtgtACGGCGACGTGGACAGCCCTTTGCCTTTAGCGGAGGTGACCGGCGGAGGCCCACACACCACACGCGAAGCTGAGCTACGACTACGACTTAAACTAGTAGAAGAAGAAGCAAACATCCTGGGGAGGAAGATTGTGGAGCTGGAAGTTGAAAACCGCGGTCTCAGAGCGGAAAATGAAGACTTGCGTAGTCAATATGAAAGGGATTGCTTTGGCCGTGAACCCTTCTCCAGCGTCCCTACCTCACCGTTTGGCGGCGATGCGCTTGAGTCTGCGAGTGAACTGCGCAGACATTTGCAGTTTGTGGAGGAAGAAGCTGAGCTCCTGCGGCGCTCCATTTCTGAAATCGAAGATCACAACAAACAGCTAACATCCGAGCTCAACCGCTTCAAATTCGGTCCCAATCAATCCGAGCGGGAATCCGAAGGAGCTGAAGGAGGACTCAAAATTGTGAATACCGCAGGTAATGGTTTTTCAAGCAGCACACTTCAGGATGAACTAAAAAACGCAAGACTCCAAGTCAACGAGTTAAGCGGGAAAGTAATGAAGCTTCAATATGAGAATCGGGTGCTAATCTCTAATATGCAGCGCTGTGATTTGGCCGCACACTTGGGAATGCGTACTGGTAGTCCACGGGATAGTGATGTAGACAGCGACGCTGGCCGAAGGGAACCAGATGAAGATGAAACAGCAAGGATATTGCTGCTCCATCCCAAACGTGAAGGTCCTGTTGGCGGAGAGAGCGATTCTGATGATTTATTTGAACGTACGGCTACTTCAGGATTCGCCAGTGGTGAAAAACCTTCAGATTCTGGCGAACTGGGAGTAATCGAATTAGCTCAGCGTAGACGGGAAGACCGGGAAGCGTTTAATAATATCAGAAGGGAAGCTGAGAGGCTCGGGAAAACAGTAGAGCGGCTCATAACGGATACGGATAGTCTTATCCGGGAAGGTCGACTGGTTGTTTTGGGAGGAGATCTTCTTGCGGAGGGTGTGGAATTTAGAGGCGACGGAGACTCAGCTGAATCTAAACAAGACTCTCAGGTGCTGGACTCCATTAATGCACGCATGAGGACTTTCCGAACCGATCTCCAGCAATTCATGGATAAAGTGGAGCATCTAGGGGATGGTTTACGGGATCGGGTTGATGATCTTTCCCCGATGCCTAACCTCACAGAATCTAGCAGCTTCCTTTCTACGGTTACCTCCATGTCCAGGGATTCGCCAATCGGGACACTGGGAAGGGATCTAGTGACGGACTTCCAGATGTTTCAGCCCATAATCCTGTTCCTCCTCATTCTCGTCCTCTTCTCGTCTCTCTCCTACGCCATCATTTTTAAGTTGGTCTTTCTTTTTGCGCTCTTCTTCGTCTTGTAG
>TCONS_00031632
ATGCGTAAAAAGATGGCCAAACTTGGCCGCGAGAAGGATGAACTGGAACAagaattgcagaagtataaatcagtgtACGGCGACGTGGACAGCCCTTTGCCTTTAGCGGAGGTGACCGGCGGAGGCCCACACACCACACGCGAAGCTGAGCTACGACTACGACTTAAACTAGTAGAAGAAGAAGCAAACATCCTGGGGAGGAAGATTGTGGAGCTGGAAGTTGAAAACCGCGGTCTCAGAGCGGAAAATGAAGACTTGCGTAGTCAATATGAAAGGGATTGCTTTGGCCGTGAACCCTTCTCCAGCGTCCCTACCTCACCGTTTGGCGGCGATGCGCTTGAGTCTGCGAGTGAACTGCGCAGACATTTGCAGTTTGTGGAGGAAGAAGCTGAGCTCCTGCGGCGCTCCATTTCTGAAATCGAAGATCACAACAAACAGCTAACATCCGAGCTCAACCGCTTCAAATTCGGTCCCAATCAATCCGAGCGGGAATCCGAAGGAGCTGAAGGAGGACTCAAAATTGTGAATACCGCAGGTAATGGTTTTTCAAGCAGCACACTTCAGGATGAACTAAAAAACGCAAGACTCCAAGTCAACGAGTTAAGCGGGAAAGTAATGAAGCTTCAATATGAGAATCGGGTGCTAATCTCTAATATGCAGCGCTGTGATTTGGCCGCACACTTGGGAATGCGTACTGGTAGTCCACGGGATAGTGATGTAGACAGCGACGCTGGCCGAAGGGAACCAGATGAAGATGAAACAGCAAGGATATTGCTGCTCCATCCCAAACGTGAAGGTCCTGTTGGCGGAGAGAGCGATTCTGATGATTTATTTGAACGTACGGCTACTTCAGGATTCGCCAGTGGTGAAAAACCTTCAGATTCTGGCGAACTGGGAGTAATCGAATTAGCTCAGCGTAGACGGGAAGACCGGGAAGCGTTTAATAATATCAGAAGGGAAGCTGAGAGGCTCGGGAAAACAGTAGAGCGGCTCATAACGGATACGGATAGTCTTATCCGGGAAGGTCGACTGGTTGTTTTGGGAGGAGATCTTCTTGCGGAGGGTGTGGAATTTAGAGGCGACGGAGACTCAGCTGAATCTAAACAAGACTCTCAGGTGCTGGACTCCATTAATGCACGCATGAGGACTTTCCGAACCGATCTCCAGCAATTCATGGATAAAGTGGAGCATCTAGGGGATGGTTTACGGGATCGGGTTGATGATCTTTCCCCGATGCCTAACCTCACAGAATCTAGCAGCTTCCTTTCTACGGTTACCTCCATGTCCAGGGATTCGCCAATCGGGACACTGGGAAGGGATCTAGTGACGGACTTCCAGTCCGGGCGCAGGGAGGAGCAGGAGAGCTGTGTAGACCGGCCCAGAGGAGCCGCGGGACTCTCTAGATACACCAGACCACACACTTTCAGATCCGAGGTCAGTGCCTCGTCCATCTCCCTCTCCAACATAAGACCTCTGATGCCTTTACTAGTGTCCTCGCAGtgccttaaaggaacactccacgcTTTTATTTACTGGAAGTACGTCCAATTTACAGCTCTCTAGAGTAGGGCTGCAGTGAGTGAAGTGAAGTGAGTATTGTCAAGTATGTTTACGCATACTCGAAATTGGCCCTCTGCTTTTAAAAcatccaagtgcacacacacgAGTGAGAAgcgagaccacacacacacacacacacacacacacacacacacacacacacacacagagctatTGCTTCCAGCTATATTCTGGCAGAGtcctggcaggagcacttttagcttagcttagcataaatcattgaatcggattagaccattagcatctcgctcagaAATGACCAATAATAATctacctatttaaagcttgacacttctgtagtgacacaaatgtaacaaaaaaaagaCTGATATttataggaactatactctcctTCCGGCGTAGTAATCAAGTAACGTTTTGGTTTAACCATAGCTGCAGCTGGCGCAATAATacatcaataattttttttttttatgttattcttCTGGATAATTTTCTGAGTagtatattagttttatttttaaaaccattttgtgTGTAATTAATATTGTCATTAATTGtaatgtgtatattttatatacactcaccggccactttattaggtacaccttactagtaccaggtttgatcctcttttgccttcagaactgccgtaatccttcgtggcgtagattcaacaaggtactggaaaaattcctcagagattttgctccatattgacgtgatagcatcacacagttgctgcagatttgtcggctgcacatccatgatgggaatccgttccaccacatcccaaaggtgctctattggattgagctctggtgactgtggaggccatttgagtacagtgaactcattgtcatggtcaagaaaccagtctgagatgattcacgctttatggcatggtgcgttatcctgctggaagtagccatcagaagatgagtacactgtggtcctaaagggatggacatggtcagcaacaatactcaggtaggctgtgttgttgacacgatgctcaattggtacttttgggcccaaagtgtgcctccacaccattacaccaccaccacctgcctgaaccgttgatacaagacagtatggatccatgctttcatgtagttgatgccaaattctgacccaaccatttgaatgtggcagcagaaatggacactcatcagaccaggcaacatgtttctaatcttctattgtccagttttggtgagcctgtgtgaattttggcctcagttttctgttcttagctgacaggagcggcacccggtgtggtcttctgctgctgtagcccatctgcctcaaggttggacgtgttgtttgttcagagatgctcttctgcagagctcggatgaatcgagtgcttatttgagttactgttgcctttctatcagctggaaccagtctggccattctcctctgacctctggcatcaacaaggcatttgcacccacagaactgccgctcactggatatttcctctttttctgaccattctctgtaaaccctagagatggttgtgcatgaaaatcctagttgatcagcagtttctgaaatactctgactgGCCTATCTGGCACGAACAACCATGCCaccttcaaagtcacttaaatcccctttcttccccattctgatgctcggtttgaactgcagcagattgtcttgaccatgtctacacgcctaaatgcattgagttgctgcaatgggattggctgattataaatttgcgttaacgagcagttggacagctgtacctaataaagtggccagtgagtgtatatggttTCCATTAGTCAATGCTTAATaacatatttactaacatgaataaacaatacaTCTGTTgcaatatttattcatctttgtgaATAGTTTGAAAATAGTCTTTCCGTTTTTTAGTTCATGCTAACTCATTTTAACAAGCGCCACTTTGGGTTTTtagtaatgcattaataaatgctgtgctgCTATAATTATCCCGCTTTTCAATAAGGAAAAATAGTGATactataaaaagaaagaaaataaaatagcataattaatgtttaatgcataataaataatgatagatTATCAGTTGAAGGCAAGACAACTAAAGAGGGGTGCATTACATATCACATGTGAAACACACATGAAACATTGGACAGCCGATTTGAATgctatcactcgattgaatgggcgttatcagtggttatcagctgatcgaaatgggccagtaggggccttctgcaccttgTAGTCAGCTCAGAAGGCTgtcatcatccatccacatggttaatcagctatagatcacatacggcgatggccggaagttaacgagaattatttatgttatttattaaatttcccattaattgtattttattaacgtctaccccaaaccctaaacccaaccatcacagtaatgcaatgtaatctggatctggagtctttggtatagctgattaaccatgtgaattgatgataacagccttctgagcctaccagtaggtgcagaaggcccctactggcccatatctatcagctgataaccactgataaagcccattcaatcgagtgatacaTCGAAGCCGGTGCATTGGTTTTTGAGACATTTACTTGTTTAAAGAAGTAATAACATGATTGCACTGTTttgttattaaatgaaaaaagctAAAAGTTATGTTCGTGTGTGTTACAACTGTGATTTTACTATGTTTTTTTCTAAATTCTTCAACATTTACAACACTCCCTTAAAAGGCCGCAAGGGAGCTCACTAGGTTTTGAAACAGATCCTGTATTTAAGAAAGAAAGACGGCACACTTTAGGATGCAAAAGAATTCTCCCCAGCttcatttaattgaataaaatgcaataaatctttAATGTAATAAAGCATAATGGAAGCGAGCCAATTGTCATAAAAATCACTCTCAATTATTTTACATCAGGTTATTAGACCCAAAGGAACATGAACAGCACTGATGCAACCCAATGAAAGACTAAATCTGGCCGAGAGCAGTTCGTTCATTAGAATCATTTGATTCACACCATTGTTTTCACAGTGATTCTTTTTGGTTTCTTCTCACTTCGCTCACAATCACTGCTGTTTATTTAACGTCACACTGGTTTGTCATGAGTTAAAATCACTCTCCATCTGCTCACGCAGGAGCTTCGATGTTTCTGTTGAACTTGTGACTGTTCTAAAGAAAAACAACTGTATGTGTGTTAGTTATGTCATCGGTTAAGTTACTGTATATGCAATTGCATTGAATTTGCTTTGTCTATATGTTTGTTTAGGCTTCAGTTTATGTGCCATTATTGTATAGGCTAAATAATATAGATAAACAGCATTATGTTGCCTTCAGGTTCTCTTTTTTCTCTAattttgaatgaaaaaataaacaaatacttatttatttatttatttacttttatttatttaattaacttatttaaattgttttatttatttatttaag

Function

symbol description
mtcl1 Predicted to act upstream of or within regulation of autophagy. Predicted to be located in extracellular space and membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000091408

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00031631 False 1449 mRNA 0.49 2 54482603 54502912
TCONS_00031632 True 5009 mRNA 0.42 2 54482603 54509065

Neighbor

gene id symbol gene type direction distance location
XLOC_015960 CABZ01050280.1 coding upstream 34890 54430632 ~ 54447713 (+)
XLOC_015959 NA coding upstream 54665 54425088 ~ 54427938 (+)
XLOC_015958 rab12 coding upstream 58967 54387710 ~ 54423636 (+)
XLOC_015957 LO018508.1 coding upstream 128978 54327160 ~ 54353625 (+)
XLOC_015956 CU179656.2 coding upstream 168394 54305610 ~ 54314209 (+)
XLOC_015962 ndufv2 coding downstream 132579 54641644 ~ 54690184 (+)
XLOC_015963 ankrd12 coding downstream 186977 54696042 ~ 54786748 (+)
XLOC_015964 twsg1a coding downstream 289624 54798689 ~ 54834764 (+)
XLOC_015965 rnf126 coding downstream 335690 54844755 ~ 54980150 (+)
XLOC_015966 zmp:0000000521 coding downstream 690656 55199721 ~ 55225028 (+)
XLOC_015955 NA non-coding upstream 212237 54085893 ~ 54270366 (+)
XLOC_015954 NA non-coding upstream 438812 54042778 ~ 54043791 (+)
XLOC_015968 NA non-coding downstream 758955 55268020 ~ 55269290 (+)
XLOC_015971 NA non-coding downstream 1094063 55603128 ~ 55603565 (+)
XLOC_015973 NA non-coding downstream 1268757 55777822 ~ 55780037 (+)
XLOC_015974 NA non-coding downstream 1273472 55782537 ~ 55784445 (+)
XLOC_015978 NA non-coding downstream 1615938 56125003 ~ 56130443 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G108050 NA unknown CI01000019 null 2340999 ~ 2341333 (+)
striped catfish (Pangasianodon hypophthalmus) G103817 NA non-coding NC_047600.1 CM018546.1 23512157 ~ 23513328 (-)