RNA id: TCONS_00031659


Basic Information

Item Value
RNA id TCONS_00031659
length 1911
RNA type mRNA
GC content 0.47
exon number 7
gene id XLOC_015977
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 56012016 ~ 56041890 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGACGCACTACAGATTCCCACATCCAGAGGAGCGAATCATacagctttaaaaaatgttttttacaatttcaaacttcattttctttttgtatttactTCAAGGACTGAATAATTTAACCAGCGCGCAAAGCTCCGCGCAATGGAGGAACCGGGTCCGATGGGTGAATAACGGCCAGGTGTTCAGTTTAATGAGCACCGGCTCCGAGTTTCACGCTCCGGTTCCGTCCAGGAGACAGTCCAGGGTGTATCAGAGCAGCAGGACGGATGCTGTTCCCGGCAGAAGCATGCAAATTCGGCTAGAAGCGATGGATAGACCTGCTAACAGCGCGCCGGACAGTGCGCTTTTGGGTCCGGACCGCGCGCAATACATCATGGCGAACAGCCGCGCTCCTGGAGCCAGACAAATGCAGGTCATGCAGAGACACAGAGCTCCTCCAGCAAGCAGAAATAACTCTACGGTCCCTTCGGAATATTCAGGTGGAGGTGGAAGAACTGGGGAAAACACCCGGAGAGGGCAAGCGGTTGCGAATTTCCAACAAATCGCAGCACCGACGGACAATTCAAACACCGTCAATTCAGATAATGGAAATGAAGCGCGAACTCCAAATGTGCCAGCCGAGCAGGGAGCTACATCTGAAACTATGCCTGGAGATGATCCGAGAAACAGGAATACagttttttataacatttatccACCCGGCGGTAGGACGATTATTCCCCGCCGACCGCCGCCTGGCACCGGTTATGGCACCAGATTTTTCCAAAATGGTCTGCCGGATCTTGTGCCAGATCCATACTCCATCCAGGCGGGTTCATACATCCAGCGCGTCCAGATGTACGCGCTCCGGTGCGCGGCGGAGGAGAACTGCCTAGCGCGAACTGCTTACAGACCAACAGTCAGAGATCTGGACTACAGGGTTCTGCTCCGATTCCCGCAGAAGGTGCGAAACATGGGAACGGCGGACTTTCTGCCCGTCAAACCCAGGCATCAGTGGGAGTGGCACAGCTGCCATCAGCATTATCACAGCATGGACGCGTTCAGTCACTATGATCTGCTGGACATCAGCACTGGACGGAAGGTTGCAGAAGGACACAAGGCCAGTTTCTGTCTGGAAGACACAGGCTGTGATCCTGGCTTTCACCGCAGATACGCCTGCACcgcacacacacagggtttgagtccaggctgcCATGACACATACGCTGCCAACATCGACTGTCAGTGGATCGACATCACAGATGTCCCGCCTGGAAACTACTTTCTCAAGGTGACGGTGAATCCGGATTTCCTGGTGGCCGAGTCGGATTTCTCCAATAACGTGGTGCGATGTGAAGTCATTTACACTGGCATTTACATCCAGACCAGAAACTGCATCATAACTGGGAGTTAAAGTCTTCAGACTAACAAGTTGTTCTAAAGACCTATAAAATAGGTTTACTTATAATAATTTGATAGATTTTTTATATGCAATTTTTGGGATAACTTGAACCATTCAATATAGCTGTTGGAATAATATGTAATGACTAAAGTACTGTATATGTGTTTTAAATGGCTTCATGCGAACGTTTGCATTAGACggttatttttgcatatttttttaaatgaagagctttttagtgtttgtatttattacatttgtactattattattattaatgattgcAACGTTTCTTTTAAGCAGAGGGTTGTTTGGTGCTTTATTAGCTGATGGTGAATATTGTGTTTACCACTAGTGTCAGATATAGACACGGCGTTTGGTTCTGCAGCAGTCAGTGGATATCATCTGGAGTATTATACTGACGTTGTGTGTGTTTGCCATGATTATAATGATGCCTCCGTGAATGCTGGAGCTGATGGACGAGGCCAGTTGTGGCTTGAGATGCAATAAACAGAAATGCAGAGAATGTAA

Function

GO:

id name namespace
GO:0030199 collagen fibril organization biological_process
GO:0048570 notochord morphogenesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0030903 notochord development biological_process
GO:0018057 peptidyl-lysine oxidation biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005507 copper ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor molecular_function
GO:0004720 protein-lysine 6-oxidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070818-3 Predicted to enable protein-lysine 6-oxidase activity. Acts upstream of or within notochord morphogenesis. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in notochord and prechordal plate.

Ensembl:

ensembl_id ENSDART00000146160

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031655 lncRNA upstream 21687 55982940 ~ 55990329 (+) False XLOC_015976
TCONS_00033722 lncRNA upstream 21687 55982949 ~ 55990329 (+) False XLOC_015976
TCONS_00031656 lncRNA upstream 21687 55983985 ~ 55990329 (+) False XLOC_015976
TCONS_00031657 lncRNA upstream 21694 55984621 ~ 55990322 (+) False XLOC_015976
TCONS_00031653 lncRNA upstream 21718 55982940 ~ 55990298 (+) False XLOC_015976
TCONS_00033723 lncRNA downstream 83113 56125003 ~ 56130443 (+) False XLOC_015978
TCONS_00033724 lncRNA downstream 83278 56125168 ~ 56130443 (+) False XLOC_015978
TCONS_00033725 lncRNA downstream 83281 56125171 ~ 56126826 (+) True XLOC_015978
TCONS_00033326 lncRNA downstream 130203 56172093 ~ 56172528 (+) True XLOC_015981
TCONS_00033327 lncRNA downstream 282444 56324334 ~ 56335388 (+) True XLOC_015983
TCONS_00031652 mRNA upstream 21732 55982940 ~ 55990284 (+) False XLOC_015976
TCONS_00031658 mRNA upstream 22323 55984788 ~ 55989693 (+) True XLOC_015976
TCONS_00031651 mRNA upstream 22328 55982300 ~ 55989688 (+) False XLOC_015976
TCONS_00031647 mRNA upstream 41046 55914699 ~ 55970970 (+) False XLOC_015975
TCONS_00031650 mRNA upstream 63806 55916911 ~ 55948210 (+) False XLOC_015975
TCONS_00031661 mRNA downstream 98051 56139941 ~ 56162607 (+) False XLOC_015979
TCONS_00031664 mRNA downstream 126729 56168619 ~ 56237133 (+) False XLOC_015980
TCONS_00031663 mRNA downstream 126729 56168619 ~ 56237133 (+) False XLOC_015980
TCONS_00031665 mRNA downstream 171804 56213694 ~ 56235043 (+) True XLOC_015980
TCONS_00031666 mRNA downstream 223901 56265791 ~ 56283159 (+) True XLOC_015982
TCONS_00031635 other upstream 1225276 54755172 ~ 54786740 (+) False XLOC_015963
TCONS_00031622 other upstream 2325828 53686071 ~ 53686188 (+) True XLOC_015951
TCONS_00031613 other upstream 3872320 52122720 ~ 52139696 (+) True XLOC_015939
TCONS_00031589 other upstream 5120072 50862527 ~ 50891944 (+) False XLOC_015923
TCONS_00031582 other upstream 5421568 50590332 ~ 50590448 (+) True XLOC_015919
TCONS_00031662 other downstream 98082 56139972 ~ 56162604 (+) True XLOC_015979
TCONS_00031668 other downstream 421321 56463211 ~ 56476884 (+) True XLOC_015985
TCONS_00031669 other downstream 445778 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031670 other downstream 456004 56497894 ~ 56507389 (+) True XLOC_015987
TCONS_00031672 other downstream 796791 56838681 ~ 56838799 (+) True XLOC_015991

Expression Profile

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