RNA id: TCONS_00033327


Basic Information

Item Value
RNA id TCONS_00033327
length 786
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_015983
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 56324334 ~ 56335388 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgtgtgtatgtctgtgtacacacatgcatgtgtatgtcatgcgtttgtgtgtgtgtgtgtgtttcaggaactGGAGATGCGTAACATGGATCTGGAGCGTCGTGTGGACAGCGCGGAGCAGACTCTGGCGGCTGCGCTGGAGGATCGGGATCGAGCCCATAATGAAGTTCAGAGAGTCGTTCAGATCCTAGACGTCAAGATCTTTGACCTCAACGACCTGCGGCAGAGTCTGCTCAAACTCATcaTGCTGGAGGTTGTGTACTGCGCTGTATGTTCACTCTGAGAGCATGTGCTGCTGGGATTTGGAGGAAAACTGAGCGCTTGTTTAAGGTGTGATGAGAAACTCCATCATCGTTTTCCTCTGATGTCTGACTCTGAGCCTTGTTATTCTGCGCTGTGCGGGAGTTTTCCCAGTTCGTCCTGCAGCTCTCGATCATAGTCCGGTGATAATATGAGGATAGCTTCGTTCTGCACTATCGAGTCAAACTGTGCTGAAGACCAGAGCAGATCTCACTGTAACACACCATGCTCTCGGTGGATGAACTGAACTTGctcaataaatattgttttacattaagatgcgtcttttttgtgtgtgagaCTTGTATGTTTTCCAATATTCTTTATGCAAACTTAAAGGAGTGGTGTTTCCAAATTTCACTGTGTACTATATAGACAATACAGGGGTCTGTTcctcgtacctcgcttaaatgatctaagatgatttggcagatcctggatcttttaatcttgataactgatctctcgctattttggttcttca

Function

GO:

id name namespace
GO:0070482 response to oxygen levels biological_process
GO:0048731 system development biological_process
GO:0036293 response to decreased oxygen levels biological_process
GO:0007508 larval heart development biological_process
GO:0006935 chemotaxis biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0030182 neuron differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0031638 zymogen activation biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:0061564 axon development biological_process
GO:0002164 larval development biological_process
GO:0007399 nervous system development biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0032502 developmental process biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0001666 response to hypoxia biological_process
GO:0048699 generation of neurons biological_process
GO:0031175 neuron projection development biological_process
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0005576 extracellular region cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0005539 glycosaminoglycan binding molecular_function
GO:0008201 heparin binding molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033326 lncRNA upstream 151806 56172093 ~ 56172528 (+) True XLOC_015981
TCONS_00033723 lncRNA upstream 193891 56125003 ~ 56130443 (+) False XLOC_015978
TCONS_00033724 lncRNA upstream 193891 56125168 ~ 56130443 (+) False XLOC_015978
TCONS_00033725 lncRNA upstream 197508 56125171 ~ 56126826 (+) True XLOC_015978
TCONS_00033722 lncRNA upstream 334005 55982949 ~ 55990329 (+) False XLOC_015976
TCONS_00033726 lncRNA downstream 161746 56497134 ~ 56507389 (+) False XLOC_015987
TCONS_00033329 lncRNA downstream 247574 56582962 ~ 56583372 (+) True XLOC_015988
TCONS_00033330 lncRNA downstream 347703 56683091 ~ 56684937 (+) True XLOC_015990
TCONS_00033331 lncRNA downstream 640356 56975744 ~ 57001547 (+) True XLOC_015994
TCONS_00033332 lncRNA downstream 685377 57020765 ~ 57025953 (+) True XLOC_015995
TCONS_00031666 mRNA upstream 41175 56265791 ~ 56283159 (+) True XLOC_015982
TCONS_00031664 mRNA upstream 87201 56168619 ~ 56237133 (+) False XLOC_015980
TCONS_00031663 mRNA upstream 87201 56168619 ~ 56237133 (+) False XLOC_015980
TCONS_00031665 mRNA upstream 89291 56213694 ~ 56235043 (+) True XLOC_015980
TCONS_00031661 mRNA upstream 161727 56139941 ~ 56162607 (+) False XLOC_015979
TCONS_00031667 mRNA downstream 127779 56463167 ~ 56476990 (+) False XLOC_015985
TCONS_00031671 mRNA downstream 322416 56657804 ~ 56671326 (+) True XLOC_015989
TCONS_00031674 mRNA downstream 556470 56891858 ~ 56911005 (+) True XLOC_015993
TCONS_00031675 mRNA downstream 602160 56937548 ~ 56976287 (+) False XLOC_015994
TCONS_00031676 mRNA downstream 813614 57149002 ~ 57174954 (+) True XLOC_015999
TCONS_00031662 other upstream 161730 56139972 ~ 56162604 (+) True XLOC_015979
TCONS_00031635 other upstream 1537594 54755172 ~ 54786740 (+) False XLOC_015963
TCONS_00031622 other upstream 2638146 53686071 ~ 53686188 (+) True XLOC_015951
TCONS_00031613 other upstream 4184638 52122720 ~ 52139696 (+) True XLOC_015939
TCONS_00031589 other upstream 5432390 50862527 ~ 50891944 (+) False XLOC_015923
TCONS_00031668 other downstream 127823 56463211 ~ 56476884 (+) True XLOC_015985
TCONS_00031669 other downstream 152280 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031670 other downstream 162506 56497894 ~ 56507389 (+) True XLOC_015987
TCONS_00031672 other downstream 503293 56838681 ~ 56838799 (+) True XLOC_015991
TCONS_00031673 other downstream 512355 56847743 ~ 56847859 (+) True XLOC_015992

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU327338 True 697 lncRNA 0.43 1 CI01000075 21719 ~ 22415 (+)
eurasian perch (Perca fluviatilis) TU281658 True 523 lncRNA 0.50 3 NC_053131.1 34939487 ~ 35012322 (+)
tiger barb (Puntius tetrazona) TU281658 False 3207 lncRNA 0.42 2 NW_025048437.1 399965 ~ 403351 (+)