RNA id: TCONS_00031667


Basic Information

Item Value
RNA id TCONS_00031667
length 1176
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_015985
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 56463167 ~ 56476990 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTATTCAGCGGGACTCCTCCCCAATGCAGCCCGAGCAGATCGCTCTTCCTGCGGTGTGACAGCAGCAGCGGCGGCGGCGGCGGTGGCGCATTGTACGCTTTTATCCTTTATTTGACTCTTTTCTTTCTACACTGAGCTAATCAACACAAACTCATCTGATCATCTCCTTCTGGAAGAACTGCAGGACGCGGCGGCTTGTCTAAAATGGCCAACAGAGACGATGAATACGATTTCTTGTTCAAAGTCGTTCTCATCGGAGATTCAGGCGTTGGGAAGAGTAACCTGCTGTCGAGATTCACACGAAACGAGTTTAACCTGGAGAGCAAGAGCACGATAGGAGTGGAGTTCGCCACCAGGAGCATTCAGGTGGATGGAAAGACCATAAAAGCACAGATCTGGGATACGGCTGGACAGGAGCGATACAGAGCCATCACCTCTGCATATTATCGTGGAGCAGTCGGTGCGCTGCTGGTGTACGACATCGCCAAACACCTTACCTATGAGAACGTGGAGCGCTGGCTGAAAGAGCTGCGAGATCACGCTGACAACAACATCGTCATCATGCTGGTTGGGAATAAGAGTGACCTGCGGCACCTGAGGGCCGTGCCCACCGATGAGGCCCGCGCTTTCGCAGAGAAGAATAACCTGTCATTCATCGAGACGTCAGCTCTGGACTCAACTAATGTTGAAGAGGCCTTCAAAAACATCCTAACAGAAATCTACCGTATCGTATCACAGAAGCAGATAGCGGAGCGGTCGGCCCATGACGAGTCTCCCGGAAATAACGTTGTGGACATCAGTGTCCCGCCCACCACAGACGGACAGAAGAGCAACAAACTGCAGTGCTGCCAAAACCTGTAACCACGTCGACCAGCCCTCACCTGTCAGTCATCTCCGGGTCCCTCATCACGTCCCGCCGCTCATCTTCTcacttttatttctgtaatatatacatgtataaatatatttgttttttgaccacacacacacagtatctAACTGCGCTGACAGtgctttactttaataaagtccAAATCAGGTTTTTCTGTGTGAATGCAACGGAATATTCCACAATACTACACAGATTAAAATGAACCCTTTTTATTCTCCTAAAACATCTGGTAAATCTGGTGTGCTTGTCATGTTTTACTCTAATTAAAAGTCTTTGTTTTTTCA

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0045054 constitutive secretory pathway biological_process
GO:0045055 regulated exocytosis biological_process
GO:0005768 endosome cellular_component
GO:0055037 recycling endosome cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-293 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in constitutive secretory pathway and regulated exocytosis. Predicted to be active in recycling endosome. Is expressed in cardiovascular system; nervous system; pharyngeal arch; pronephric duct; and spinal cord neural tube. Orthologous to human RAB11B (RAB11B, member RAS oncogene family).

Ensembl:

ensembl_id ENSDART00000123392

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033327 lncRNA upstream 127779 56324334 ~ 56335388 (+) True XLOC_015983
TCONS_00033328 lncRNA upstream 131743 56329541 ~ 56331424 (+) True XLOC_015984
TCONS_00033326 lncRNA upstream 290639 56172093 ~ 56172528 (+) True XLOC_015981
TCONS_00033723 lncRNA upstream 332724 56125003 ~ 56130443 (+) False XLOC_015978
TCONS_00033724 lncRNA upstream 332724 56125168 ~ 56130443 (+) False XLOC_015978
TCONS_00033726 lncRNA downstream 20144 56497134 ~ 56507389 (+) False XLOC_015987
TCONS_00033329 lncRNA downstream 105972 56582962 ~ 56583372 (+) True XLOC_015988
TCONS_00033330 lncRNA downstream 206101 56683091 ~ 56684937 (+) True XLOC_015990
TCONS_00033331 lncRNA downstream 498754 56975744 ~ 57001547 (+) True XLOC_015994
TCONS_00033332 lncRNA downstream 543775 57020765 ~ 57025953 (+) True XLOC_015995
TCONS_00031666 mRNA upstream 180008 56265791 ~ 56283159 (+) True XLOC_015982
TCONS_00031664 mRNA upstream 226034 56168619 ~ 56237133 (+) False XLOC_015980
TCONS_00031663 mRNA upstream 226034 56168619 ~ 56237133 (+) False XLOC_015980
TCONS_00031665 mRNA upstream 228124 56213694 ~ 56235043 (+) True XLOC_015980
TCONS_00031661 mRNA upstream 300560 56139941 ~ 56162607 (+) False XLOC_015979
TCONS_00031671 mRNA downstream 180814 56657804 ~ 56671326 (+) True XLOC_015989
TCONS_00031674 mRNA downstream 414868 56891858 ~ 56911005 (+) True XLOC_015993
TCONS_00031675 mRNA downstream 460558 56937548 ~ 56976287 (+) False XLOC_015994
TCONS_00031676 mRNA downstream 672012 57149002 ~ 57174954 (+) True XLOC_015999
TCONS_00031677 mRNA downstream 1027083 57504073 ~ 57563888 (+) True XLOC_016002
TCONS_00031662 other upstream 300563 56139972 ~ 56162604 (+) True XLOC_015979
TCONS_00031635 other upstream 1676427 54755172 ~ 54786740 (+) False XLOC_015963
TCONS_00031622 other upstream 2776979 53686071 ~ 53686188 (+) True XLOC_015951
TCONS_00031613 other upstream 4323471 52122720 ~ 52139696 (+) True XLOC_015939
TCONS_00031589 other upstream 5571223 50862527 ~ 50891944 (+) False XLOC_015923
TCONS_00031669 other downstream 10678 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031670 other downstream 20904 56497894 ~ 56507389 (+) True XLOC_015987
TCONS_00031672 other downstream 361691 56838681 ~ 56838799 (+) True XLOC_015991
TCONS_00031673 other downstream 370753 56847743 ~ 56847859 (+) True XLOC_015992
TCONS_00031695 other downstream 2694278 59171268 ~ 59171938 (+) True XLOC_016025

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000075_01451280_01460210.mRNA True 2083 mRNA 0.39 5 CI01000075 1451280 ~ 1461636 (+)