RNA id: TCONS_00033330


Basic Information

Item Value
RNA id TCONS_00033330
length 1630
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id XLOC_015990
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 56683091 ~ 56684937 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agatcaactccacatcaccaggaagcATCTCTGTTATAagattacagcgcctctggccatgccTCTTCACTGCTCCAGGCTTCTTGTACAAGCATGACACTGAGCTCTGGCGGTGGTGTGTGTGTACGCTCTGGATTCTGCTCTTACTGCTGGGATCTGCCGCTGGTGTTTTCTGCAGGCTCTGGGACGCTCTGCTCTGGGATGGTTTCTGGGACGAGGCCGCTCAGATCCAGACTGGCTCTGGGACTCAATTGGTCTTCTTCTGTGCTGGTTTCGCTCTCCTGACTAACTAGAGGTGGACGGTGGGGTCTGAAACCAGCAGCCGGATCCTCCACATCCGAGTCTGAGTCCAGAGAGCGCTCCTGAGAGCCTGACGAGCCCACTGAAtcacctgcgcacacacacatgcatgcacgcacacatgtatacacacaaacagagagggacacacagatagacacacatatacagatgcatacacacaaaacacacacacaaatatatatatattactaatagtttatttaaatatatattatttaatagttaTCACTTCTAATATCTGTAATATACACCGTGTGCTGTCTCACCGCACTCCTGATGGGCTCTGATTGGCTCTTCATGAGCTCCAGTCTCACTGTCCTGAATGAAGAAGAGCATGATTAAAGCAGAAACAGCAGAACACTTGCATCCTCACtatctgtgtttccatccaaagatgggAATTAAATTTGTgctcaaaactggaatattgatTGAAACGtctgtgaataaagcagcgtttccagtCAATGAGAAACAAAAGAgcacaaaatcatcacttcctgtcAACTGAAGCAACTATCAGACAGAAAAATGTAGTTTAGTGCGTTAGTTTTGTGCTGTTTTTtcttctctaataaatgagttgcacctcagaagacgaaAGGCAATGAATGTGGTGAATGTGATAGTTTGTGGAGGCGTGAGGGAgggcagacagatgctcaagacagttctggagggaataataataataaaagtatcaAGTGAATCTCAgtcagagtgaccatcgggttattgatcacctccctgactaaggcccttcttcccCTGATCAATCAggttagatggccggccagctctaggaagagtcctggtggtttcaaacatcttccacttatgaatgatggaggccgctgtgctcagtggaactttcagagcagcagaaatgtttctgtaaccttccccagccttgtgcatggagacaatcctgtctcagaggactacagacaattcctttgggctctattttgacggtccatgcgcaaagcgcaaaacgcagggctcaaacgctttcagggcgtgtcaggacgcgtttttgcttaTTTAAGtacgggaaaatgcgctttgcgccaaggcgtatggtctaaaagggttgagtttattttcttaatgagttataggtgtgttttaagaataaaccaatcagagtctcatctcccattccctttaagagtcagctgcgtcgtgtcaagagcgcattcgctatttacaggacgcaaagtaagtctaattGGGAatactgagcatttcacaagcaaacagttaacagtgttttaacagaaaactgttaaacagagcatctact

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0048468 cell development biological_process
GO:0048747 muscle fiber development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0006642 triglyceride mobilization biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0055006 cardiac cell development biological_process
GO:0055013 cardiac muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0014902 myotube differentiation biological_process
GO:0014904 myotube cell development biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0045214 sarcomere organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0042060 wound healing biological_process
GO:0042383 sarcolemma cellular_component
GO:0005901 caveola cellular_component
GO:0034359 mature chylomicron cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033329 lncRNA upstream 99719 56582962 ~ 56583372 (+) True XLOC_015988
TCONS_00033726 lncRNA upstream 175702 56497134 ~ 56507389 (+) False XLOC_015987
TCONS_00033327 lncRNA upstream 347703 56324334 ~ 56335388 (+) True XLOC_015983
TCONS_00033328 lncRNA upstream 351667 56329541 ~ 56331424 (+) True XLOC_015984
TCONS_00033326 lncRNA upstream 510563 56172093 ~ 56172528 (+) True XLOC_015981
TCONS_00033331 lncRNA downstream 290807 56975744 ~ 57001547 (+) True XLOC_015994
TCONS_00033332 lncRNA downstream 335828 57020765 ~ 57025953 (+) True XLOC_015995
TCONS_00033727 lncRNA downstream 342951 57027888 ~ 57058638 (+) False XLOC_015996
TCONS_00033728 lncRNA downstream 351290 57036227 ~ 57058638 (+) True XLOC_015996
TCONS_00033729 lncRNA downstream 364826 57049763 ~ 57050093 (+) True XLOC_015997
TCONS_00031671 mRNA upstream 11765 56657804 ~ 56671326 (+) True XLOC_015989
TCONS_00031667 mRNA upstream 206101 56463167 ~ 56476990 (+) False XLOC_015985
TCONS_00031666 mRNA upstream 399932 56265791 ~ 56283159 (+) True XLOC_015982
TCONS_00031664 mRNA upstream 445958 56168619 ~ 56237133 (+) False XLOC_015980
TCONS_00031674 mRNA downstream 206921 56891858 ~ 56911005 (+) True XLOC_015993
TCONS_00031675 mRNA downstream 252611 56937548 ~ 56976287 (+) False XLOC_015994
TCONS_00031676 mRNA downstream 464065 57149002 ~ 57174954 (+) True XLOC_015999
TCONS_00031677 mRNA downstream 819136 57504073 ~ 57563888 (+) True XLOC_016002
TCONS_00031678 mRNA downstream 1117023 57801960 ~ 57819139 (+) True XLOC_016004
TCONS_00031670 other upstream 175702 56497894 ~ 56507389 (+) True XLOC_015987
TCONS_00031669 other upstream 189430 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031668 other upstream 206207 56463211 ~ 56476884 (+) True XLOC_015985
TCONS_00031662 other upstream 520487 56139972 ~ 56162604 (+) True XLOC_015979
TCONS_00031635 other upstream 1896351 54755172 ~ 54786740 (+) False XLOC_015963
TCONS_00031672 other downstream 153744 56838681 ~ 56838799 (+) True XLOC_015991
TCONS_00031673 other downstream 162806 56847743 ~ 56847859 (+) True XLOC_015992
TCONS_00031695 other downstream 2486331 59171268 ~ 59171938 (+) True XLOC_016025
TCONS_00031696 other downstream 2637193 59322130 ~ 59324650 (+) False XLOC_016028
TCONS_00031697 other downstream 2637297 59322234 ~ 59324688 (+) False XLOC_016028

Expression Profile

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