RNA id: TCONS_00033331


Basic Information

Item Value
RNA id TCONS_00033331
length 3003
lncRNA type sense_over
GC content 0.46
exon number 5
gene id XLOC_015994
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 56937548 ~ 57001547 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gggtgctccagtttcccccacagtccaaacacatgcgctataggggaactgatcaactaaattggctgtagtgtatgagtgtgtgtgtgtgtgtgtgaatgagtgtgtatgggtgtttctcagtactgggttgcagctggaagggcatccgctgtgtaaagcctatgctggaatagttgccgattctttccgctgtggcgacccctaataagggactaagctgaaggaaaataaattaattaaatctgcAATATTTTATCTTTACTTTGAGATGCTGAGAAGCAAAACTAATACATGAAAAAATGTGTGTTTCTATTCATTGTCTATAGACAATGATGCAGACAGTGCGATGGATGACCGAGACAGTGATTACCGCAGTGAGACCAGTAACAGTATCCCACCACCGTTCTACTCCACGTCTCAACCCAATGCCTCAGTCCACCAGTATCCCATAAACCACCAGCACCGAAACCCCAGAGCACCGTACAGCCGAACTATCAACAACTGTGAGCTGGACTACGACCAGCAGAGAACCGTCAGTCCGACCGGGAGCTATGCATCCTCTGCCGAACTCAGTCGCTGTAGTTCTCAACTGAGCGAAGAATACGCCGAGCGTGAACTGTACGATGAGAACGACTCGTACCACTCCTGCCACTCCTCAGTGTCCTACAGCAAGGGTTCACCAGATTGGGACGAGACCCAGTGTGCGTACAGCGACGAGTGTGCCTACAGTAAAGATGGCGGAGAAGAAGGTGCATTATATGAAGAAGATGATGGTGATCTGTACCCAGAAGAGGTGGACATGTATGAAGGAGAGGAGGACTTCAATTATGAAGAGTTAGACGAGGACCAAGAACTTCCGTTTACACCAACACCAACTAGTACCGCACCAATAACGGATGCTCAAACGTCCGCCAGACCTCCTTTAGAGAAGCAAAactcgcttcaccaacagcaaACACCACCTCAGAATGCAAGCCAACCGACCAATCAGACACAAGCCCAACCACCAATCAAACCTGCAATCCAGCAAAGCCCCGCCCCCCAGCAGCCGCCCCCAAAACAGCAGCCTCCACCACAACAACAATCTTCCGGCCCGATTCCTTCGGTTCAATCCTTCTTCGCTATGGCTAAACCAttgactgcagtgtttggattGGGTGGATCTACACCCACACCACCTCCTCCAGCACCAACAACTCAATCCCAACCTCAACCAATGACAACACAATCCCAAACTCCAGTCGCTCCACCTCCAGCTCCATCCACGCAACAGATGCCTCCAGTTACCAACAAATCTTTCGAGATTCCGGTTGAAGATCCGATTATCACTTCTGCACCTGAACCGAAACCTCCAACCCCTGCTGAGGAGAAACCACCCACTGTAGAGCCACCAATGGAGGAGGAAAATCCCATTCAAGAAGACGATTTCCCAATGGAAGAGCCTTTGGTGGAGGAAATTAAGATGGAGAGTCCTCCTCTATCGCCCCCTTATGAAGAGGAGCAACTGATGCCTGAACCTGAAAGTGAGCCGGTGATTGAGGAGCCGAAGGAGCCTGTGGATCCAGCACTCAGAGCTAAAGAGAACTGGCTGAGAATCTTTGAGAAAGTCCGACGACAGCTGCAGGAGgctcGAGGAGAAACAGACTCTCAGTCTCTGTGGTTTGGTAAAGGAGGCATGGGCGGAGCCCTGTACAGCATCGACAGCATGCCGGATCTGAGGAAGAGGAAAACCATTCCACTGGTCCGAGATCTGGTGAGAACACACCAAAAACACTCAAACTTTGACTTTGACaaactttattgtcatttaaaatgtacactacctgacaaaagtcatgtcgcctatccaagttttaggaacagtaaataataactggacttctagttgattatttggtatcagaagtgtcttatatgaaaggtaaaggcctctagattacaattatttgagcacaataaaatatgatcatgtcttgattattaatgatttcattaagACAATAagatctgactctgcttagactaaagtctcatcactgaacagaaataatgtccagtatagaatataaagtcctgctgcagtggagacagaatgaatattgtgtctgactccatcatgagcttggaggactgcatccatacatctctgacatgactcaaatcactgattaataaagtcatctggaatgaagaagaaagcgttcagcaggactcccagagttcatcaagagtctttgtgttcatcttcaacacctcctccttcctcttaccccagacatgctcaataatgtttatgtctggtgactgggctggccaatcctggagcagcttgaccttctttgctttcaggagctttgatgtggaggctgaagtatgagcaggagcgctatcctgctggagaattgtccctctcctgtggtttgtaatgtaatgggcagcacaaatgtcttgacacctcaggctgttgatgttgatcatccactctgcagatctctccatactgaatgtgaccccaaaccatgatttctcattcaccaaacttgactgatttctgtgagaatcatgGCTCTAtgagggttccagtaggtcttctgcagtgtgatgattgggatgcagatcaacagatgattcaacagaggaatccaccttctgacacttttccacatcatcaactagaagtaaagttattattcgctgctcttacaactgcgaTCCACAAGAAGACTTTTGTCTGGTGGTGTACTTGTCTCGTAGTGTACTTAAATTTTGTCTGGTAGTGTACTTAAactcaaagtcagctttattgtaaTTTCTGCCTCATGTACAGACATACAGAGAATTAAAATGGCATTTCAGTGCTCCACATTAGAGCTCTACATTAGTGtttttcattgttgttgttgttgttgttgttgttgccgtTGTTGTTGTTAAGATCATGTATATGTGACTAACAGAGTTTTTATCCTGTTTTCTTCACTTCTGCTCTCTGGATTCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033330 lncRNA upstream 290807 56683091 ~ 56684937 (+) True XLOC_015990
TCONS_00033329 lncRNA upstream 392372 56582962 ~ 56583372 (+) True XLOC_015988
TCONS_00033726 lncRNA upstream 468355 56497134 ~ 56507389 (+) False XLOC_015987
TCONS_00033327 lncRNA upstream 640356 56324334 ~ 56335388 (+) True XLOC_015983
TCONS_00033328 lncRNA upstream 644320 56329541 ~ 56331424 (+) True XLOC_015984
TCONS_00033332 lncRNA downstream 19218 57020765 ~ 57025953 (+) True XLOC_015995
TCONS_00033727 lncRNA downstream 26341 57027888 ~ 57058638 (+) False XLOC_015996
TCONS_00033728 lncRNA downstream 34680 57036227 ~ 57058638 (+) True XLOC_015996
TCONS_00033729 lncRNA downstream 48216 57049763 ~ 57050093 (+) True XLOC_015997
TCONS_00033730 lncRNA downstream 116099 57117646 ~ 57121813 (+) False XLOC_015998
TCONS_00031674 mRNA upstream 64739 56891858 ~ 56911005 (+) True XLOC_015993
TCONS_00031671 mRNA upstream 304418 56657804 ~ 56671326 (+) True XLOC_015989
TCONS_00031667 mRNA upstream 498754 56463167 ~ 56476990 (+) False XLOC_015985
TCONS_00031666 mRNA upstream 692585 56265791 ~ 56283159 (+) True XLOC_015982
TCONS_00031663 mRNA upstream 738611 56168619 ~ 56237133 (+) False XLOC_015980
TCONS_00031676 mRNA downstream 147455 57149002 ~ 57174954 (+) True XLOC_015999
TCONS_00031677 mRNA downstream 502526 57504073 ~ 57563888 (+) True XLOC_016002
TCONS_00031678 mRNA downstream 800413 57801960 ~ 57819139 (+) True XLOC_016004
TCONS_00031679 mRNA downstream 847297 57848844 ~ 57871253 (+) False XLOC_016005
TCONS_00031681 mRNA downstream 862760 57864307 ~ 57901998 (+) False XLOC_016005
TCONS_00031673 other upstream 127885 56847743 ~ 56847859 (+) True XLOC_015992
TCONS_00031672 other upstream 136945 56838681 ~ 56838799 (+) True XLOC_015991
TCONS_00031670 other upstream 468355 56497894 ~ 56507389 (+) True XLOC_015987
TCONS_00031669 other upstream 482083 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031668 other upstream 498860 56463211 ~ 56476884 (+) True XLOC_015985
TCONS_00031695 other downstream 2169721 59171268 ~ 59171938 (+) True XLOC_016025
TCONS_00031696 other downstream 2320583 59322130 ~ 59324650 (+) False XLOC_016028
TCONS_00031697 other downstream 2320687 59322234 ~ 59324688 (+) False XLOC_016028
TCONS_00031698 other downstream 2320694 59322241 ~ 59324584 (+) False XLOC_016028
TCONS_00031699 other downstream 2320711 59322258 ~ 59324621 (+) False XLOC_016028

Expression Profile

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