RNA id: TCONS_00033726


Basic Information

Item Value
RNA id TCONS_00033726
length 630
lncRNA type inter_gene
GC content 0.48
exon number 5
gene id XLOC_015987
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 56497134 ~ 56507389 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTTCCACTCCTGAACCAAAGGCTCAAAAGGAATTCCTGTTTAAGTTCGTTCTCATCGGAGATTCGGGTGTTGGGAAGAGTAACCTGCTGTCGAGATTCACACAAAATGAGTTTAATCTGGAGACCAAAAGCACGATAGGAGTGGATTTCGTCACCAAGAGAATTCAGGTGGATGGAAAGACCATAAAAGCACAGATCTGGGATACGGCAGGACAGGAGCGCTTCAGAGCCATCACCTCTGCATATTACCGTGGTGTGGCCGGTGCGCTGCTGGTGTATGACATCACCAAACACCTGACCTATAAAAATGTGGAGCGCTGGCTGAAAGAGCTGCGAAAACATGCCGACAACAACATCTTCATCATGCTGGTGGGCAATAAGAGCGACCTGCAGCACCTGAGGGCCGTGCCCACTGATAAGGCCCGCGCTTTCGCAGAGAAGAATAACCTGTCATTTATCGAGACGTCAGCTCTGGACTCAACTAATGTTGAAGAGGCCTTCAAAAACATCCTAACAGAAATCTACCGTAACGTATCAAAGAAGCAAGTCGGCTCATGACAGGTCTCTCAGGAAATAATGTTGTGGACATCAGTGTCAAGCCCACCACAGACGGACAGAAGAGCAACAAAC

Function

GO:

id name namespace
GO:0015850 organic hydroxy compound transport biological_process
GO:0050996 positive regulation of lipid catabolic process biological_process
GO:1901618 organic hydroxy compound transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033327 lncRNA upstream 161746 56324334 ~ 56335388 (+) True XLOC_015983
TCONS_00033328 lncRNA upstream 165710 56329541 ~ 56331424 (+) True XLOC_015984
TCONS_00033326 lncRNA upstream 324606 56172093 ~ 56172528 (+) True XLOC_015981
TCONS_00033723 lncRNA upstream 366691 56125003 ~ 56130443 (+) False XLOC_015978
TCONS_00033724 lncRNA upstream 366691 56125168 ~ 56130443 (+) False XLOC_015978
TCONS_00033329 lncRNA downstream 75573 56582962 ~ 56583372 (+) True XLOC_015988
TCONS_00033330 lncRNA downstream 175702 56683091 ~ 56684937 (+) True XLOC_015990
TCONS_00033331 lncRNA downstream 468355 56975744 ~ 57001547 (+) True XLOC_015994
TCONS_00033332 lncRNA downstream 513376 57020765 ~ 57025953 (+) True XLOC_015995
TCONS_00033727 lncRNA downstream 520499 57027888 ~ 57058638 (+) False XLOC_015996
TCONS_00031667 mRNA upstream 20144 56463167 ~ 56476990 (+) False XLOC_015985
TCONS_00031666 mRNA upstream 213975 56265791 ~ 56283159 (+) True XLOC_015982
TCONS_00031664 mRNA upstream 260001 56168619 ~ 56237133 (+) False XLOC_015980
TCONS_00031663 mRNA upstream 260001 56168619 ~ 56237133 (+) False XLOC_015980
TCONS_00031665 mRNA upstream 262091 56213694 ~ 56235043 (+) True XLOC_015980
TCONS_00031671 mRNA downstream 150415 56657804 ~ 56671326 (+) True XLOC_015989
TCONS_00031674 mRNA downstream 384469 56891858 ~ 56911005 (+) True XLOC_015993
TCONS_00031675 mRNA downstream 430159 56937548 ~ 56976287 (+) False XLOC_015994
TCONS_00031676 mRNA downstream 641613 57149002 ~ 57174954 (+) True XLOC_015999
TCONS_00031677 mRNA downstream 996684 57504073 ~ 57563888 (+) True XLOC_016002
TCONS_00031669 other upstream 3473 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031668 other upstream 20250 56463211 ~ 56476884 (+) True XLOC_015985
TCONS_00031662 other upstream 334530 56139972 ~ 56162604 (+) True XLOC_015979
TCONS_00031635 other upstream 1710394 54755172 ~ 54786740 (+) False XLOC_015963
TCONS_00031622 other upstream 2810946 53686071 ~ 53686188 (+) True XLOC_015951
TCONS_00031672 other downstream 331292 56838681 ~ 56838799 (+) True XLOC_015991
TCONS_00031673 other downstream 340354 56847743 ~ 56847859 (+) True XLOC_015992
TCONS_00031695 other downstream 2663879 59171268 ~ 59171938 (+) True XLOC_016025
TCONS_00031696 other downstream 2814741 59322130 ~ 59324650 (+) False XLOC_016028
TCONS_00031697 other downstream 2814845 59322234 ~ 59324688 (+) False XLOC_016028

Expression Profile

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