RNA id: TCONS_00031635


Basic Information

Item Value
RNA id TCONS_00031635
length 4043
RNA type nonsense_mediated_decay
GC content 0.46
exon number 6
gene id XLOC_015963
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 54696042 ~ 54786748 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCCATGATGAGATCTGTAAGCCGTAGCTGCCACAGCTAGTCAGAAGATGCACCATGGCCAAACCGGGATCCGACCGAGATGAAGCCATGGTGGAGAAGACAGCGGGGAAGAAGTGGATGAGAAACCAGCAACTTGTAATTCGGCTGACCAAGAGCAACTGGAGTCTCCAGAGAAGAACTCTCGAGAAAAAACTGATAAGCGACCACCAACAAAGGATCGGGAATCTGAGAAGTCTGATAAGAGACACTCGGATAAAGATAAGAAGGTAAAATCTGAGCATTTAGCTGACAAGCCTGAGCTCCACAACTCTACAGATCGATGGAAGGAAAAGGAGAAATTAACAAATGTTTCATATTCGCCCAATGATAAGAGCCATAAAGAGGGTGAAAAACTCAAACCAATGACTCCAGTGAAAAAGCATGAGGAGAACAAGAAGAATAAGGACAAGCTTGATAAAAAAGCGGAGAAAGAGCACGCTTCTGGTGACCACAGAGACAAAGATAAAACAACTTCTGAAAAGAAAGGAAAAGCTCCTGAGAAAACTGCTGATCATGGAAAATCTGACCGCAGTAAAGACAAAGAACGGGACAAAGATTCTGACAAGAGGAAAAAAGATAAATCAACCACTCCATCTTCCTCTTCCTACTCGAATCTAAAGTCGTTATTGGAAGAAAAGAAAGGCTATGTTTGTGAGAATAATAAGGTTGTCTCATCTAAATCAAAGGAAGAGGTAACCAAGCCTTCAGAGAAAGACCGAGATCGAAGAGAGAGGGACCGGGAGTCTGAAAGACATCGAGATCGGGAACGAGATCGGCACAAGGAAAAGGACAAAGATCGATCCCAGTTTAACAGGGATGGCAAAATTAACAAACCGAAACCAAGTGAAGTGGACTCCAAATCTAAGGTTACACCTATTCTAAAGGATACTCGTCCCAAAGAAAAGAGGCTGGTGAATGATGACCTCATGAAGACCAGCTTTGAACGCATGCTCAGTCTCAAAGATCAGGAAATCGAACAGTGGCACAAAAAGCACTTGGAGAAAATCAAGCAGAAGGAACGGGAGCGGCTAAAACAGCGTCCTGGAATTGACCCTgcgaaacaacaaaaaaacaaggaaaaaattAAATCATCCTCTACGTCCACTGAGCCATGTCTAACCAAGGAACTAACTCGGTCAAAGAGCTCAGAAGCGCCAGATGGACAACGTGAAAAGATCTTAAAGGACGCCACTAGTGTGAGAACTCTCTCGCTAGATGCAAAAACCTTGGGGAAGAACGGTCCTATAATTGAAAACAATCTAAGTCGATCTCCGAGACCAGAAAGTGAAAAATCTGGTCTTATGTCAAGATCAATATCAATGATCTCTGTGGCAAGTTCAGAAGACTCCTGCCAGGCAACTATTTTGACACCTAGACCAACTGACCAATATGATTCTGACATGAACGTGGAAGCCTTAGATTCGCAGccacctttacttcagtcttcCCTTGTTGCACAGTCCTCCAGGTCGCCTAGTGTTCATGATAAAGATATTAGCAGTCTTCCCGAATCATCGGCTCTCTGCAATCGCACACCATTGGCAAGCAGGCATGCATCACCATGCTTAAGGGCTATTCTGGATGAAGAAGCCAAGGTAccaacaactgaaacaaaaccCACAGAAGAGTCTCCGGTAATCAGTATTGCATCACAACCAACCAGCGAGCAATCTCAAGTTCATCTAACTGAGATTAGTGTCCCCCCTGTTCAGGAGACTCGGAGCAGTCAAAGTCTTACAAACTCTTTTCCAGAAAATGAAATTCTGTCTAGTAATGAAGCCGAAGTCGTCAGTTCCACATGTCAAGTACAACCTTCGCAGGCTAGTGCTAAAGACAGTGTAACACAAGCAAACAGTGTGTTTCCGAGCCATTTGGAAGAGCAGAACAAGTTTTGCACCACTAGTAGTCAAATAGAGCATGCAAGTCTAGGTCAGCTTGATGTCCCTGGTGCAGAGGGAGTAAAAAAGGAGGCTTCACTTGCTGTTGCATCATTACAGTCATCTCATACATCAACTTCATCATCAGATTCCAATGCACATTTGCCTTCGAGTAGTCAGCATTGTGAGATTAGCTCTGCTTCCAGTGGTGAACAGACAATGACAACAGACTCTAGTTTGAGAACAGAGCAAAGAGACAAACCATTGGTTGCTTCAGAGGACAAGATTGGGGAACATGTCACTAAAACTGATTGCGCGAGCACTCCAAGTCCATCTACAGCATCCTGTAGATCCAGCTCTGAGGAATCTACTAAACCACTGCTGAAGGCGACCAGTGTTCAGGAAGATACTGAAAAGGGCAATGAACAAGTGCAAGAAGAAAGTATCTCAAGGTTCTCCAATGACCCATTGGTTGCAGTTGATGCTCAACCAGAGAAAGAAGAGCAAGGCCTACATTTGGCTTCGGTGACAAATGTTTCTTGCTGTGCCAGTCCAGAAAGAATCCCAGAGGAGCCCATGGAGGTTCCAGAGGAAGTTTCGGATAAGAGCCGAATCACAGAAATTGATGAGGCCAAAGTCTTGTCTTCAGAAGAAGGTGCAGTGACTTCATCTGAAAGTAAGGCTGACTCAGAAACGCCAGACCCGTTTTCTCTTGACGAGAAGCCTTTGAAATCGGACATTCTGGCTAATGTAGAACAGGCTCAAAGCAGTGCTCCCATCCACCCTGATCATCAGGCAGAGCCAACCAGTGGAGAGACCTCTGGAAGTTCCTCTCCGATATCAGTCATGGACAGAGATTCAGATATATCTGGGGCCAGAGCCAAAGTCAGACTCCTTGAAGAAGAAGCTGACATTCAAGCGACCCATCCAAGAAAACGAAAAATGCCTAGAGCTTCTCCGCTAGCCCAAGCAAATCTTACAGCTCAGCAGGTCAGAGAAAAGACACAGCAGTCCCTCGCTGCGATTGTAGATGCACTGAAGCTTGAGGAGATTCAGCCTTACCAGACAGAGAGAGCCAACCCATATTATGAGTACTTGCACATTCGCAAAAAGATCGAAGAGAAGAGGAAAGTCCTTTGTAGTGTCATTCCTCAAGCGCCTCAGTACTACGACGAGTATGTGACATTCAATGGGTCCTATCTGCTGGATGGAAACCCTCTCAGCAAACTCTGCATCCCAACAATAACGCCTCCACCCTCTTTACCTGAACCACTGAAGGAGATGTTCAAACAGCAAGAGATGGTGCGGATGAAGCTGAGACTGCAGCACAGCATCGAAAGGGAAAAACTGATTGTATCCAATGAGCAGGAGGTTTTGAGAGTTCATTACCGCGCTGCGAGAACACTAGCCAATCAGACGCTTCCGTTCAGTGCCTGCACAGTCCTATTGGATGCCGAAGTATACAACATGCCCCAAGAAGTCCAGggtgaTGATGGGAAGACTTCTGTTCGAGATCGATTCAATGCGAGGCAGTTCATGTCTTGGCTTCAGGATGTAGACGACAAGTTTGACAAGTTGAAGACGTGTCTCCTGATGCGGCAGCAGCATGAAGCGGCAGCGTTAAACGCAGTCCAGCGTCTGGAGTGGCAGCTAAAGCTACAGGAACTGGATCCCGCCACTTACAAGTCCACCAGCATTTTCGAGATTCCCGAATTCTACATCCCGCTCGTGGAGGTCAACGACGACTTCGACCTGACGCCGATATGACCTGCTGAAGAGGCGAACGCATTTTCAAAGCTATCGGACCACGTCAAGAGATGAGTGTAGGGTGAAACACGAAGCACTTGATTTTGGGGGTGTGCGTGCGCATgtatgttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcacagatGCTCcagatttataataaaatagataaggaaaaaaaaaagcgcTGCACTTCCAGGCTATCGGTTCAGTCTGTGTTGGTAGTTCTGGTTCGACCACATGCACTTCACCGTATGGGCGCCAGATTGGTTCCTACAGACTGCAGGCCGAAACTAAAACGCACTTAACCCTGAGGTCCACGGGtcgaggaaga

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-846 Is expressed in central nervous system; eye; and telencephalon. Orthologous to human ANKRD12 (ankyrin repeat domain 12).

Ensembl:

ensembl_id ENSDART00000146037

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031630 lncRNA upstream 307459 54430632 ~ 54447713 (+) True XLOC_015960
TCONS_00033703 lncRNA upstream 327234 54425088 ~ 54427938 (+) True XLOC_015959
TCONS_00031626 lncRNA upstream 440963 54305610 ~ 54314209 (+) True XLOC_015956
TCONS_00033323 lncRNA upstream 606894 54085893 ~ 54148278 (+) False XLOC_015955
TCONS_00033702 lncRNA upstream 711381 54042778 ~ 54043791 (+) True XLOC_015954
TCONS_00033705 lncRNA downstream 428402 55215142 ~ 55225028 (+) False XLOC_015966
TCONS_00033704 lncRNA downstream 428402 55215142 ~ 55225028 (+) False XLOC_015966
TCONS_00033707 lncRNA downstream 428453 55215193 ~ 55225028 (+) False XLOC_015966
TCONS_00033708 lncRNA downstream 428453 55215193 ~ 55225028 (+) False XLOC_015966
TCONS_00033706 lncRNA downstream 428453 55215193 ~ 55225028 (+) False XLOC_015966
TCONS_00031633 mRNA upstream 64988 54641644 ~ 54690184 (+) True XLOC_015962
TCONS_00031632 mRNA upstream 246107 54482603 ~ 54509065 (+) True XLOC_015961
TCONS_00031631 mRNA upstream 252260 54482603 ~ 54502912 (+) False XLOC_015961
TCONS_00031629 mRNA upstream 331536 54389750 ~ 54423636 (+) True XLOC_015958
TCONS_00031628 mRNA upstream 336141 54387710 ~ 54419031 (+) False XLOC_015958
TCONS_00031637 mRNA downstream 11949 54798689 ~ 54833041 (+) False XLOC_015964
TCONS_00031638 mRNA downstream 17645 54804385 ~ 54834764 (+) False XLOC_015964
TCONS_00031639 mRNA downstream 40651 54827391 ~ 54833042 (+) True XLOC_015964
TCONS_00031640 mRNA downstream 58015 54844755 ~ 54980150 (+) True XLOC_015965
TCONS_00031641 mRNA downstream 412981 55199721 ~ 55215510 (+) False XLOC_015966
TCONS_00031622 other upstream 1068984 53686071 ~ 53686188 (+) True XLOC_015951
TCONS_00031613 other upstream 2615476 52122720 ~ 52139696 (+) True XLOC_015939
TCONS_00031589 other upstream 3863228 50862527 ~ 50891944 (+) False XLOC_015923
TCONS_00031582 other upstream 4164724 50590332 ~ 50590448 (+) True XLOC_015919
TCONS_00031579 other upstream 4551877 50202638 ~ 50203295 (+) True XLOC_015915
TCONS_00031662 other downstream 1353232 56139972 ~ 56162604 (+) True XLOC_015979
TCONS_00031668 other downstream 1676471 56463211 ~ 56476884 (+) True XLOC_015985
TCONS_00031669 other downstream 1700928 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031670 other downstream 1711154 56497894 ~ 56507389 (+) True XLOC_015987
TCONS_00031672 other downstream 2051941 56838681 ~ 56838799 (+) True XLOC_015991

Expression Profile

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