RNA id: TCONS_00031662


Basic Information

Item Value
RNA id TCONS_00031662
length 1227
RNA type nonsense_mediated_decay
GC content 0.46
exon number 6
gene id XLOC_015979
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 56139941 ~ 56162607 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAAGAGTCCTggaacatgatgatgatgatgtgtgtttATGCCAGTTATTGAACATCTCCTcagattatcattattttttcttttattcttgaaCGAAACTCTTTGGTTTTTCAGTCATGGACCAGAGGAAGACGGTTGTCGTGACCGGTTTCGAGCCATTTGGTGAACATACTGTTAATGCCAGTTGGGTGGCTGTACAGGAGCTGGAGAAACTGGGTTTGGGCGATGATATAAACCTCCATGTTGCTGAAGTTCCTGTGGAATATCAAGCGGTCCAGAATCTCCTGCCTTCTCTATGGAAAGATCATCTTCCACAATTAGTGGTCCACGTGGGTGTGTCCGGGATGGCGACCACAGTGACACTGGAGCAGTGTGGTCATAACCAGGGCTACATGCGGATGGACAACTGCATGTTCTGTCCCGTGTCCCGCTGCTGTGTGGATGGAGGACCAGACTGCATTCATTCAGTCATAGACATGGACATGGTCTGCAAGAGAGTCAACTCCTCCGGCCTCGGAGTCTCTGTGTCTGTGTCGAAGGACGCCGGCAGGTATCTGTGTGACTACACCTACTACATGTCTCTGTTTGTGGGCGAGGGCCGGTCGGCGTTTGTTCATGTTCCTCCTCTGGATAAACCGTACAGCGCGGAGGATCTGGCCCGAGCGCTCCGAGCCATCATTCGGGAGATGCTGGAGCACATGGAGACacagcagacaaacacacactgcttGCACAACCCgtgagaaacacacacatcactgCTGAAACTCCTGCGATGCATCCTGGGATCAGTTCAGTGGTTTGAGAGACCGTAAACAGCAGGtggaaatgctggaaacctgAAATTATGACAGAATACAAGCAATGATGTGCCTGTGCTGGACTGTGATAAAGATGGTAATAACTATGTGTATGTGGTTATTAAAGTGCCAAAATGACAACACAGGCTTTAAGATACAAGTTcatgcataaacaaacaaacaaacaaacagcaaacccGATGCCTTTTCAGTGACCTGAGCTCTCATGCCTTCAGTGCTTTGGTTTTTGTATCTGTTTATTATATGAAATGTGAATTGTTGAGATGATTGTAAGGTGACGTCTGTCTTTTATCTTGTGGGACGGTGtttgagattttttatttagttttatttgttttatactttTTGCAAAAATGCTGGACCTCTGGACTATAATCGGTCcaaattaaactactctttaatcTG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005829 cytosol cellular_component
GO:0008233 peptidase activity molecular_function
GO:0016920 pyroglutamyl-peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-88 Predicted to enable pyroglutamyl-peptidase activity. Predicted to be involved in proteolysis. Predicted to be located in cytosol. Orthologous to human PGPEP1 (pyroglutamyl-peptidase I).

Ensembl:

ensembl_id ENSDART00000076895

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033723 lncRNA upstream 9529 56125003 ~ 56130443 (+) False XLOC_015978
TCONS_00033724 lncRNA upstream 9529 56125168 ~ 56130443 (+) False XLOC_015978
TCONS_00033725 lncRNA upstream 13146 56125171 ~ 56126826 (+) True XLOC_015978
TCONS_00031655 lncRNA upstream 149643 55982940 ~ 55990329 (+) False XLOC_015976
TCONS_00033722 lncRNA upstream 149643 55982949 ~ 55990329 (+) False XLOC_015976
TCONS_00033326 lncRNA downstream 9489 56172093 ~ 56172528 (+) True XLOC_015981
TCONS_00033327 lncRNA downstream 161730 56324334 ~ 56335388 (+) True XLOC_015983
TCONS_00033328 lncRNA downstream 166937 56329541 ~ 56331424 (+) True XLOC_015984
TCONS_00033726 lncRNA downstream 334530 56497134 ~ 56507389 (+) False XLOC_015987
TCONS_00033329 lncRNA downstream 420358 56582962 ~ 56583372 (+) True XLOC_015988
TCONS_00031659 mRNA upstream 98082 56012016 ~ 56041890 (+) False XLOC_015977
TCONS_00031660 mRNA upstream 99881 56012070 ~ 56040091 (+) True XLOC_015977
TCONS_00031652 mRNA upstream 149688 55982940 ~ 55990284 (+) False XLOC_015976
TCONS_00031658 mRNA upstream 150279 55984788 ~ 55989693 (+) True XLOC_015976
TCONS_00031651 mRNA upstream 150284 55982300 ~ 55989688 (+) False XLOC_015976
TCONS_00031664 mRNA downstream 6015 56168619 ~ 56237133 (+) False XLOC_015980
TCONS_00031663 mRNA downstream 6015 56168619 ~ 56237133 (+) False XLOC_015980
TCONS_00031665 mRNA downstream 51090 56213694 ~ 56235043 (+) True XLOC_015980
TCONS_00031666 mRNA downstream 103187 56265791 ~ 56283159 (+) True XLOC_015982
TCONS_00031667 mRNA downstream 300563 56463167 ~ 56476990 (+) False XLOC_015985
TCONS_00031635 other upstream 1353232 54755172 ~ 54786740 (+) False XLOC_015963
TCONS_00031622 other upstream 2453784 53686071 ~ 53686188 (+) True XLOC_015951
TCONS_00031613 other upstream 4000276 52122720 ~ 52139696 (+) True XLOC_015939
TCONS_00031589 other upstream 5248028 50862527 ~ 50891944 (+) False XLOC_015923
TCONS_00031582 other upstream 5549524 50590332 ~ 50590448 (+) True XLOC_015919
TCONS_00031668 other downstream 300607 56463211 ~ 56476884 (+) True XLOC_015985
TCONS_00031669 other downstream 325064 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031670 other downstream 335290 56497894 ~ 56507389 (+) True XLOC_015987
TCONS_00031672 other downstream 676077 56838681 ~ 56838799 (+) True XLOC_015991
TCONS_00031673 other downstream 685139 56847743 ~ 56847859 (+) True XLOC_015992

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000075_00080935_00083813.mRNA True 3583 mRNA 0.36 2 CI01000075 80086 ~ 86148 (-)