RNA id: TCONS_00033722


Basic Information

Item Value
RNA id TCONS_00033722
length 1759
lncRNA type read_through
GC content 0.40
exon number 7
gene id XLOC_015976
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 55982300 ~ 55990329 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAATAGTAAAAAGAGGGAGATTCTGGGAGAAAGGAAAGGAGAGAGAGGCTGAAAGCATTCCCAAGGAAGCGATTCCTTTGCTAGTGTCCTATCGCGAAGACCAAGAACAAACAAAGAGGATCAGAATGAAGTTTATTATTGGAATAGGGGGTGTGACCAATGGAGGAAAGACAACTTTGACTGGAAGACTCATAAAGAACCTACCAAACTGTTGTGTGGTTCATCAAGATGATTTTTTCAAGGTATGAAGATATCCCACAGTATTTTATTAATACTTTCTTCATATGTATTGTGGCACATAAAAGTATTTGGACATTTATGCCTTGCTTAAGaatgtattaatgttattattaatacattttaagtctGGCGTGAGTGTCTGAATACTTCAGATTCAGAATACAGACAATGCTAGATTATAATTAGCGCCACAGCATTTTAGAGGGACAGAAAAGGTAAAGACATTTAGGACTTGAatcatttgttgtatttatgGACCCATGTGGTTCATGAACCCTATGCTGGTGTTCTCCTGGACAGCCAACctcaaacaaatacacaaatgatGGATGCCTAAAATAATGTACAGTCTAGCAGGCATTCATTTGAAgcattaaaaatgctaattccACTAATACGATTCTCTTGCTCATGCCATAGTCAATCTATGGCATGCAAGAGGATCTGGCAACCCTTCAAAACTCCAATCGCGCTCTCATATCGGCATATTTAATAACACCTCTTAAGTGCATCACACACACATTCCTAACTGTCTTCGGAGGCTTTTTTTACACCGGGAGCCTCTTGAAGAATTGCATTTTTAACATGCTGGTAAAGATAATCAATCCAACGAATGCACATTTAGTGCACTGAACTCAAATTAAGTCAAGTACACACTTCAAATTGATATTTGAAGACTAGGCTGAGGGCTTGGCGTCACATGTCCAGGTGGGACCAGCACTGCCTGAGCGATCTACacctttttgttttattggtCACTGTTATTGCAGCCCCAAGATCAAATAGAGCTCGGGGAGGACGGCTTTAGACAATGGGATGTCATTACCGCCTTAGACATGGACGCCATGGTGAACACTGTTAAAGGATGGATGGAGAACCCGGTGAAGTTTGCACGATCCCATGGCGTGAGCGTTTCCACCACATCTGACCCTGATAGTGACATCCACATACTCATTGTGGAGGGATTTCTGCTTTATAACTACAAGCCTTTAATTGACGTCTATAACAAGTGCTTCTACGTCACCATTCCATATGAAGAGTGCAAAAGGAGAAGAAGTACGAGAACGTACACCGTTCCTGACCCACCCGGTCTGTTTGACGGCCATGTTTGGCCAATGTACTTGAAACACAGGACAGAAATGGAGAACAGCAGCTTGGATATCCAATATCTGGACGGCATGAGCTCTAAGGACGAGCTCTATAACCAACTTTATGAAGACATTCAGAACTCTCTGTTGAACATCTTATAGCATCTCCAATCGGATTGAAGATGTGTTTGTGTATAGAACTGTAAATAGGATCTTAAGTAGATTCGGCTTCTGCCACTGGATGAACTTTGTAAATACGATGAAGTACTAACTTATTTGAAAACTTGTGGCTAGTGCCTTTGATTTTATATTGCTCTGtgtaacttttgttttatttaaaatcacgCCTCACTCTCTGGGCTGATCAGAGATGTACAGTTTTCATGTATACTGTAATTGAAGAACTTCAATCAAAACACACATTTGAACT

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033721 lncRNA upstream 198504 55782537 ~ 55784445 (+) True XLOC_015974
TCONS_00033720 lncRNA upstream 202912 55777822 ~ 55780037 (+) True XLOC_015973
TCONS_00033325 lncRNA upstream 379384 55603128 ~ 55603565 (+) True XLOC_015971
TCONS_00033719 lncRNA upstream 713659 55268020 ~ 55269290 (+) True XLOC_015968
TCONS_00033324 lncRNA upstream 760051 55222687 ~ 55222898 (+) True XLOC_015966
TCONS_00033723 lncRNA downstream 134674 56125003 ~ 56130443 (+) False XLOC_015978
TCONS_00033724 lncRNA downstream 134839 56125168 ~ 56130443 (+) False XLOC_015978
TCONS_00033725 lncRNA downstream 134842 56125171 ~ 56126826 (+) True XLOC_015978
TCONS_00033326 lncRNA downstream 181764 56172093 ~ 56172528 (+) True XLOC_015981
TCONS_00033327 lncRNA downstream 334005 56324334 ~ 56335388 (+) True XLOC_015983
TCONS_00031647 mRNA upstream 11979 55914699 ~ 55970970 (+) False XLOC_015975
TCONS_00031650 mRNA upstream 34739 55916911 ~ 55948210 (+) False XLOC_015975
TCONS_00031649 mRNA upstream 34739 55916911 ~ 55948210 (+) False XLOC_015975
TCONS_00031648 mRNA upstream 34739 55916911 ~ 55948210 (+) True XLOC_015975
TCONS_00031646 mRNA upstream 309724 55665323 ~ 55673225 (+) True XLOC_015972
TCONS_00031659 mRNA downstream 21687 56012016 ~ 56041890 (+) False XLOC_015977
TCONS_00031660 mRNA downstream 21741 56012070 ~ 56040091 (+) True XLOC_015977
TCONS_00031661 mRNA downstream 149612 56139941 ~ 56162607 (+) False XLOC_015979
TCONS_00031664 mRNA downstream 178290 56168619 ~ 56237133 (+) False XLOC_015980
TCONS_00031663 mRNA downstream 178290 56168619 ~ 56237133 (+) False XLOC_015980
TCONS_00031635 other upstream 1196209 54755172 ~ 54786740 (+) False XLOC_015963
TCONS_00031622 other upstream 2296761 53686071 ~ 53686188 (+) True XLOC_015951
TCONS_00031613 other upstream 3843253 52122720 ~ 52139696 (+) True XLOC_015939
TCONS_00031589 other upstream 5091005 50862527 ~ 50891944 (+) False XLOC_015923
TCONS_00031582 other upstream 5392501 50590332 ~ 50590448 (+) True XLOC_015919
TCONS_00031662 other downstream 149643 56139972 ~ 56162604 (+) True XLOC_015979
TCONS_00031668 other downstream 472882 56463211 ~ 56476884 (+) True XLOC_015985
TCONS_00031669 other downstream 497339 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031670 other downstream 507565 56497894 ~ 56507389 (+) True XLOC_015987
TCONS_00031672 other downstream 848352 56838681 ~ 56838799 (+) True XLOC_015991

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU203659 True 2103 lncRNA 0.35 2 NC_035913.1 8369801 ~ 8371932 (-)