RNA id: TCONS_00033332


Basic Information

Item Value
RNA id TCONS_00033332
length 654
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_015995
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 57020765 ~ 57025953 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ccgcggctgtaaccgccatccgcgcatctctactaGTAATAACCTATAATCAATGTTGGGTAAAGttgcattttgaatttatttgtatatgttacTTTAAGATTAAGATAGGCTTTAGATTGTACTTTTTAATAGTAACTTTACCCAAAACCCAAAACTATTGTTAAGTGTAGTTTTCTGCAAGCTGAACTTTGTGAGATTTTGTACACAGTGCGGTCAGGAAAGTCTTGTAAATGTCGgtaagtgtgtgttttgtgtgtttgtgttcaggcaTTTCGCGTGTCTGTCCTCCAAGTACATGTGTCCTGGTGTTCCTGCGGTTATGAGCACACTGTTGGCCAACATTAATGCTTATTACGCTCACACAACACAGTCCTCCAACAACGTCTCTGCCTCCGACCGCTTCGCTGCCTCCAACTTTGGGAAAGAGAGGTTTGTGAAACTGTTGGACCAACTGCACAACTCCCTGAGGATCGACCTCTCTATGTACAGGAATAATTTTCCAGCCAGCAGTCCTGAGCGGCTCCAGGATCTGAAATCCACTGTGGATCTTCTGACCAGCATCACTTTCTTCAGGATGAAGGTTTGTTCTTTGTTTCAATCTGAAATGATTCGtttgattttaaatgattcatttgattcaTTTGTGCTCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033331 lncRNA upstream 19218 56975744 ~ 57001547 (+) True XLOC_015994
TCONS_00033330 lncRNA upstream 335828 56683091 ~ 56684937 (+) True XLOC_015990
TCONS_00033329 lncRNA upstream 437393 56582962 ~ 56583372 (+) True XLOC_015988
TCONS_00033726 lncRNA upstream 513376 56497134 ~ 56507389 (+) False XLOC_015987
TCONS_00033327 lncRNA upstream 685377 56324334 ~ 56335388 (+) True XLOC_015983
TCONS_00033727 lncRNA downstream 1935 57027888 ~ 57058638 (+) False XLOC_015996
TCONS_00033728 lncRNA downstream 10274 57036227 ~ 57058638 (+) True XLOC_015996
TCONS_00033729 lncRNA downstream 23810 57049763 ~ 57050093 (+) True XLOC_015997
TCONS_00033730 lncRNA downstream 91693 57117646 ~ 57121813 (+) False XLOC_015998
TCONS_00033731 lncRNA downstream 91698 57117651 ~ 57120351 (+) True XLOC_015998
TCONS_00031675 mRNA upstream 44478 56937548 ~ 56976287 (+) False XLOC_015994
TCONS_00031674 mRNA upstream 109760 56891858 ~ 56911005 (+) True XLOC_015993
TCONS_00031671 mRNA upstream 349439 56657804 ~ 56671326 (+) True XLOC_015989
TCONS_00031667 mRNA upstream 543775 56463167 ~ 56476990 (+) False XLOC_015985
TCONS_00031666 mRNA upstream 737606 56265791 ~ 56283159 (+) True XLOC_015982
TCONS_00031676 mRNA downstream 123049 57149002 ~ 57174954 (+) True XLOC_015999
TCONS_00031677 mRNA downstream 478120 57504073 ~ 57563888 (+) True XLOC_016002
TCONS_00031678 mRNA downstream 776007 57801960 ~ 57819139 (+) True XLOC_016004
TCONS_00031679 mRNA downstream 822891 57848844 ~ 57871253 (+) False XLOC_016005
TCONS_00031681 mRNA downstream 838354 57864307 ~ 57901998 (+) False XLOC_016005
TCONS_00031673 other upstream 172906 56847743 ~ 56847859 (+) True XLOC_015992
TCONS_00031672 other upstream 181966 56838681 ~ 56838799 (+) True XLOC_015991
TCONS_00031670 other upstream 513376 56497894 ~ 56507389 (+) True XLOC_015987
TCONS_00031669 other upstream 527104 56487668 ~ 56493661 (+) True XLOC_015986
TCONS_00031668 other upstream 543881 56463211 ~ 56476884 (+) True XLOC_015985
TCONS_00031695 other downstream 2145315 59171268 ~ 59171938 (+) True XLOC_016025
TCONS_00031696 other downstream 2296177 59322130 ~ 59324650 (+) False XLOC_016028
TCONS_00031697 other downstream 2296281 59322234 ~ 59324688 (+) False XLOC_016028
TCONS_00031698 other downstream 2296288 59322241 ~ 59324584 (+) False XLOC_016028
TCONS_00031699 other downstream 2296305 59322258 ~ 59324621 (+) False XLOC_016028

Expression Profile

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