XLOC_011022 (rgl2)


Basic Information

Item Value
gene id XLOC_011022
gene name rgl2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45364153 ~ 45398408 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021525
TTGGCAGATCTCTGCCTGTCTGGACTCGCAGAGTTGAAGGGGGAGCCGTCCCCAATGAAGACCACATGGTACTGCCCGCTGGACCTGTCCACTGTGTCTGAAATGGAGGAGGACGGCATCATCTACACTGTGGTGGTGAAACAAGGTCCTGGTTCCCCCACCAGCCCTCAGTCTACAGCAGCCCGCTCTCAGCACGTCAAAGCCGGGACAGAGGAGAAGCTGGTCCTGCATCTCCTTCACTCCTTCTCCATGGGCGACTCATCCTTCATCTCCATCTTCCTCTCCACCTACCGCTCCTTCACCTCCACCCAGAGAGTGCTGGACATCCTCATATGCAGGTTGGAAAATCCTCCTGGGGAGTCTCACAGCAATAGCCGTCAGATGTTCAACAAAGCGGTGTGTACAGTGTTCAGTACATGGATGACTGACTATCCTGAAGATTTCCGTTCTCTGAGTGACCCGTCCCGTCTGCTGCGTCTGGCCCCGCTTCTGCCGACAGACTCTTCAGGGGCTGAAATCAAGAGCCGACTGTTGCGTATCGCAGAGGAGCTGAGCGAGAAAACCCTGCTGTCTGCATCGCTCTCAGATCCTACCAAAGGTCTGTTGTCTCCTCCGAACCCCTCAGACTTTGATGCCACCAGCGTCCTGGGATTTCCATCTAGCGTGATCGCAGAGCAGCTCACCAGGATTGAGACAGATCTGTTTCTGAAGCTGGTGCCCCATCACTGCCTGGGCTCTCTGTGGTCTCAGAGAGATAAGAAGGGTCAGGAAGGAGCATGTTGGTCAGTCAGAGCAACTATCAAGCAGTTTAATCGCTTAGCTAACGCCGTCACGGCCTCGTGTCTGTGGATGACAACTCTGAAGAGCCAGCAGAGGGCCAGACTGCTGGAGAAGTGGATCAGCGTTGCAGAGGCCTGCAGAACCAGGAAGAACTTCTCATCGCTGTACGCCATCCTCTCAGCGCTGCAGAGCAACCCCATTCACAGACTGAGGAAGACCTGGCAGGAGACAGACAGAGAAGCTGTGAAGAGATACGAGGAGCTTTCTGACATCTTCTCAGAGAAAGACAACTATTCTCAGAGCCGAGAGCTGCTCAAAGAGGAGGGGACTTCCAAATTTGCAAACCATGACACTAAAATCAACAACAGGAGATTTACTGGGTCGTGCGCTCAAGGCACTGTACCATACCTGGGCATATTCCTCAGAGATCTCACCATGCTGGACACTGCAGTCAAAGACAGACTAGAGAATGGCTTCATCAACTTCGATAAACGACGACGGGAGTTCGAAGTCATCGCTCAAATACGCCTCCTACAGTCCTCatgtaaaaacagcatttttcgAACCGacgaaacattcattcattggtATCACAGTGTGCCCACTCTACGTGAAGAGGAAAGcTACAAGCTGTCCAATCAGATTGAAGCACCAGGTGAGCCGAGTCCTGGCCGTGGCCTGAACCCTACAGTGATCATCACACAATGTCCAGACGCTCTCTCAGCTGTTGCCAATACGACAATGGATGCTGACGGCATATTTGACTTTCCATCTCCTGTCAATCAGCTGCTCTCCAAGCTTTGCAAGCATGTGAAATCCCCATCCGTTTCCTGTCTGGACGTTGATTCGTCACCGCCATCCAATGATTCCACGCCCTCAATCCTGACCACACCCACTACAGCTGTCAAATCACATCGCCGCTCTGTCTCCTGTGGCAACAACCCGACCAATAGCAAACCAGAGGCGGGGCCTGATATGAGAATCGTCAGGATACGGATGGATTTGCACGACGGCAACTTATACCGCAGCATTCTGGTTACCAGTAATGATAAAACACCCACTGTAATCAGTTCTGCATTAGAGAAGCACAACCAGAACGCTCAAGAAGCCTCCAAATATGAGCTGATCCAGCTGCTGCCTGAGGGGAAAGAGTTAATAATACCTCCAACAGGAAACGTCTTCTACGCCATGTCTTCAGCCAGTGTGGACTTCCTGTTGCGGAGACGAGGAGGAAACACACCGACAGGTTCTCCAAATCTCGGCAATGAAACCAGCGCGACCTTCCCTCGAATCAAAGCCAAGGGCAGGAGACTAGTGCGCACGCTGTTTTAACACAAAAACAGGACATTCAAGGCCACAGAAAAGACATCAAATATGTCATTCAGAGCCCTGAGACAAAAACGGTGTACAATTGACCCAAATATAGTCCCAACATTAGTAATTTGAGTGAAAGCTTGGTTTTAATGGCTCTAAGATGTTAGTTACTGCTAAATGTTGCACTATTTTTGCATTTCATAAATCCATAATGAATTTCAAGTACCTTTTAGCTGATGTCAGCATTTCCAGGACTCCCCCGTCTACCTCTAAAGCTGAAGTCCATTGGTTACAGATTATTGGTCACAGAACTGCATTaataaggcaagacactgcaggtgaatagggtcaaaaaattaacatt

Function

symbol description
rgl2 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RGL2 (ral guanine nucleotide dissociation stimulator like 2).

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04014 Ras signaling pathway

ZFIN:

id description
ZDB-GENE-010131-1 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RGL2 (ral guanine nucleotide dissociation stimulator like 2).

Ensembl:

ensembl_id ENSDARG00000007727

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021525 True 2458 mRNA 0.50 19 45364153 45398408

Neighbor

gene id symbol gene type direction distance location
XLOC_011021 si:dkey-33i11.1 coding downstream 36537 45303096 ~ 45327616 (-)
XLOC_011020 hpn coding downstream 75554 45249055 ~ 45288599 (-)
XLOC_011019 FP016247.2 coding downstream 118411 45242381 ~ 45245742 (-)
XLOC_011018 si:dkey-33i11.4 coding downstream 128206 45228101 ~ 45235947 (-)
XLOC_011017 fxyd1 coding downstream 138633 45202602 ~ 45225520 (-)
XLOC_011023 NA coding upstream 393977 45792385 ~ 45795127 (-)
XLOC_011024 ntrk1 coding upstream 398194 45796602 ~ 45854882 (-)
XLOC_011025 afp4 coding upstream 505745 45904153 ~ 45910050 (-)
XLOC_011026 afp4 coding upstream 514239 45912647 ~ 45917683 (-)
XLOC_011027 NA coding upstream 584065 45982473 ~ 45994189 (-)
XLOC_010626 CR392024.2 misc downstream 24468978 20895112 ~ 20895175 (-)
XLOC_011016 FP085399.4 non-coding downstream 171001 45186673 ~ 45193152 (-)
XLOC_011015 FP085399.6 non-coding downstream 189593 45174446 ~ 45174560 (-)
XLOC_011012 FP085399.5 non-coding downstream 219781 45140858 ~ 45144372 (-)
XLOC_011011 FP085399.3 non-coding downstream 229674 45130921 ~ 45134479 (-)
XLOC_011028 NA non-coding upstream 689081 46087489 ~ 46097432 (-)
XLOC_011029 NA non-coding upstream 797717 46196125 ~ 46203345 (-)
XLOC_011030 BX537142.1 non-coding upstream 818400 46216808 ~ 46216909 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location