Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_011017 |
| gene name | fxyd1 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007127.7 |
| NCBI id | CM002900.2 |
| chromosome length | 55266484 |
| location | 45202602 ~ 45225520 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| fxyd1 | Predicted to enable sodium channel regulator activity and transmembrane transporter binding activity. Predicted to be involved in negative regulation of protein glutathionylation; regulation of cardiac muscle cell membrane potential; and regulation of sodium ion transmembrane transport. Predicted to be located in several cellular components, including T-tubule; caveola; and intercalated disc. Predicted to be part of sodium:potassium-exchanging ATPase complex. |
| id | name | namespace |
|---|---|---|
| GO:0043269 | regulation of ion transport | biological_process |
| GO:0006811 | ion transport | biological_process |
| GO:2000649 | regulation of sodium ion transmembrane transporter activity | biological_process |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0099106 | ion channel regulator activity | molecular_function |
| GO:0017080 | sodium channel regulator activity | molecular_function |
| id | description |
|---|---|
| ko04024 | cAMP signaling pathway |
| ko04131 | Membrane trafficking |
| ko02000 | Transporters |
| id | description |
|---|---|
| ZDB-GENE-050309-14 | Predicted to enable sodium channel regulator activity. Predicted to be involved in regulation of sodium ion transmembrane transporter activity. Predicted to act upstream of or within ion transport and regulation of ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axis; chordo neural hinge; hypochord; olfactory system; and pectoral fin. Orthologous to human FXYD3 (FXYD domain containing ion transport regulator 3) and FXYD4 (FXYD domain containing ion transport regulator 4). |
| ensembl_id | ENSDARG00000099014 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00021516 | False | 1072 | mRNA | 0.39 | 8 | 45202602 | 45225520 |
| TCONS_00021517 | True | 297 | mRNA | 0.41 | 3 | 45207587 | 45209684 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_011016 | FP085399.4 | coding | downstream | 9450 | 45186673 ~ 45193152 (-) |
| XLOC_011014 | si:dkey-33i11.9 | coding | downstream | 24172 | 45172793 ~ 45178430 (-) |
| XLOC_011015 | FP085399.6 | coding | downstream | 28042 | 45174446 ~ 45174560 (-) |
| XLOC_011013 | si:ch73-343g19.4 | coding | downstream | 50433 | 45149355 ~ 45152169 (-) |
| XLOC_011012 | FP085399.5 | coding | downstream | 58230 | 45140858 ~ 45144372 (-) |
| XLOC_011018 | si:dkey-33i11.4 | coding | upstream | 2581 | 45228101 ~ 45235947 (-) |
| XLOC_011019 | FP016247.2 | coding | upstream | 16861 | 45242381 ~ 45245742 (-) |
| XLOC_011020 | hpn | coding | upstream | 23535 | 45249055 ~ 45288599 (-) |
| XLOC_011021 | si:dkey-33i11.1 | coding | upstream | 77576 | 45303096 ~ 45327616 (-) |
| XLOC_011022 | rgl2 | coding | upstream | 138633 | 45364153 ~ 45398408 (-) |
| XLOC_010626 | CR392024.2 | misc | downstream | 24307427 | 20895112 ~ 20895175 (-) |
| XLOC_011011 | FP085399.3 | non-coding | downstream | 68123 | 45130921 ~ 45134479 (-) |
| XLOC_011010 | FP085399.2 | non-coding | downstream | 96028 | 45104613 ~ 45106574 (-) |
| XLOC_011023 | NA | non-coding | upstream | 566865 | 45792385 ~ 45795127 (-) |
| XLOC_011027 | NA | non-coding | upstream | 756953 | 45982473 ~ 45994189 (-) |
| XLOC_011028 | NA | non-coding | upstream | 861969 | 46087489 ~ 46097432 (-) |
| XLOC_011029 | NA | non-coding | upstream | 970605 | 46196125 ~ 46203345 (-) |
