XLOC_011018 (si:dkey-33i11.4)


Basic Information

Item Value
gene id XLOC_011018
gene name si:dkey-33i11.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 45228101 ~ 45235947 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021518
ACAGAAAGGTCTTTTGATAGTAGCCCACCTGAGGAGCCTCATCCAACATCTACAGCCATCAGTTCCTCTGCAAAGGAGGGGTAAAATGAGCCAGCTCACAGAACTAGTTCTCCTAACAGTCTTCTTGGCACTGTTCAGTCGAGCAGAAGCAAATCCTTTTGTTTACAacTATGAGGCGCTGAGGATCGGGGGTTTGGTCTTCACATGTGTGCTTGTAGCAGGAGCTGTTACAGCTCTGTGTTGGGGGCAGTGCAAACCAAAAAGAAAGCATGATGATGACGCAAGCAAAATCTAATGATTATGATCTGGAACTTCATCAGCTGAAAACTTTCCGCTGGAGTTGTGATCGAGTATAAGACACTTTTTTTTCTGGTCTATAATCTACAGGTGGCTTTCTAGCTCCACTTTTCCCCCTTGTAATTTGTTATGTAGAATTTCCATTGTTTTAACCAAGTAATTTTTACATTAATCACAGATCCTGCCCATAAATGCTGAGCTCTCTTATTTTGAATTTGTAGATTCATTCTATAAATAAGTTAAGCAAATCTCTTCAAGTGACACTTTAATAAATATTCTCAGTGATGGGGATGCAAAGCTACATTTCATTTGTAAGATATTGTTACCTTGGGGTTTAAACGCTGtacaacatgaaaaaaaaataaaaatggcaaccTA
>TCONS_00021519
ACAGAAAGGTCTTTTGATAGTAGCCCACCTGAGGAGCCTCATCCAACATCTACAGCCATCAGTTCCTCTGCAAAGGAGGGGTAAAATGAGCCAGCTCACAGAACTAGTTCTCCTAACAGTCTTCTTGGCACTGTTCAGTCGAGCAGAAGCAAATCCTTTTGTTTACAacTATGAGGCGCTGAGGATCGGGGGTTTGGTCTTCACATGTGTGCTTGTAGCAGGAGCTGTTACAGCTCTGTGTTGGGGGCAGTGCAAACCAAAAAGAAAGTAGGTCACCTGAGCTGTCGGTCACACTCGTGCTTTTAAATCGCAGTAAAATGATGTACATTTCAAGATCACAACATTTTTGGGGAATTTTTGGTGGtgtttttgaaaatatgcatCTTATTTGACAGGCATGATGATGACGCAAGCAAAATCTAATGATTATGATCTGGAACTTCATCAGCTGAAAACTTTCCGCTGGAGTTGTGATCGAGTATAAGACACTTTTTTTTCTGGTCTATAATCTACAGGTGGCTTTCTAGCTCCACTTTTCCCCCTTGTAATTTGTTATGTAGAATTTCCATTGTTTTAACCAAGTAATTTTTACATTAATCACAGATCCTGCCCATAAATGCTGAGCTCTCTTATTTTGAATTTGTAGATTCATTCTATAAATAAGTTAAGCAAATCTCTTCAAGTGACACTTTAATAAATATTCTCAGTGATGGGGATGCAAAGCTACATTTCATTTGTAAGATATTGTTACCTTGGGGTTTAAACGCTGtacaacatgaaaaaaaaataaaaatggcaacc
>TCONS_00021835
TCACAGAACTAGTTCTCCTAACAGTCTTCTTGGCACTGTTCAGTCGAGCAGAAGCAAATCCTTTTGTTTACAacTATGAGGCGCTGAGGATCGGGGGTTTGGTCTTCACATGTGTGCTTGTAGCAGGAGCTGTTACAGCTCTGTGTTGGGGGCAGTGCAAACCAAAAAGAAAGTAGGTCACCTGAGCTGTCGGTCACACTCGTGCTTTTAAATCGCAGTAAAATGATGTACATTTCAAGATCACAACATTTTTGGGGAATTTTTGGTGGtgtttttgaaaatatgcatCTTATTTGACAGGCATGATGATGACGCAAGCAAAATCTAATGATTATGATCTGGAACTTCATCAGCTGAAAACTTTC
>TCONS_00021520
ATGGTATGTCATGTTGTCGTGTCATTTTGTCTCTGTGTTAACACATCTTTATTGTCATCTGCAGTCTTCTTGGCACTGTTCAGTCGAGCAGAAGCAAacTATGAGGCGCTGAGGATCGGGGGTTTGGTCTTCACATGTGTGCTTGTAGCAGGAGCTGTTACAGCTCTGTGTTGTAAGTAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000099117

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021518 False 675 mRNA 0.39 7 45228101 45235947
TCONS_00021519 False 801 lncRNA 0.39 6 45228103 45235947
TCONS_00021835 False 365 lncRNA 0.42 5 45228444 45230712
TCONS_00021520 True 180 mRNA 0.46 2 45228758 45230084

Neighbor

gene id symbol gene type direction distance location
XLOC_011017 fxyd1 coding downstream 2581 45202602 ~ 45225520 (-)
XLOC_011016 FP085399.4 coding downstream 34949 45186673 ~ 45193152 (-)
XLOC_011014 si:dkey-33i11.9 coding downstream 49671 45172793 ~ 45178430 (-)
XLOC_011015 FP085399.6 coding downstream 53541 45174446 ~ 45174560 (-)
XLOC_011013 si:ch73-343g19.4 coding downstream 75932 45149355 ~ 45152169 (-)
XLOC_011019 FP016247.2 coding upstream 6434 45242381 ~ 45245742 (-)
XLOC_011020 hpn coding upstream 13108 45249055 ~ 45288599 (-)
XLOC_011021 si:dkey-33i11.1 coding upstream 67149 45303096 ~ 45327616 (-)
XLOC_011022 rgl2 coding upstream 128206 45364153 ~ 45398408 (-)
XLOC_011023 NA coding upstream 556438 45792385 ~ 45795127 (-)
XLOC_010626 CR392024.2 misc downstream 24332926 20895112 ~ 20895175 (-)
XLOC_011012 FP085399.5 non-coding downstream 83729 45140858 ~ 45144372 (-)
XLOC_011011 FP085399.3 non-coding downstream 93622 45130921 ~ 45134479 (-)
XLOC_011010 FP085399.2 non-coding downstream 121527 45104613 ~ 45106574 (-)
XLOC_011027 NA non-coding upstream 746526 45982473 ~ 45994189 (-)
XLOC_011028 NA non-coding upstream 851542 46087489 ~ 46097432 (-)
XLOC_011029 NA non-coding upstream 960178 46196125 ~ 46203345 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G114458 NA non-coding NC_056714.1 CM032083.1 19280428 ~ 19283527 (-)
mexican tetra (Astyanax mexicanus) G125130 ccni unknown NC_035910.1 CM008313.1 27059833 ~ 27117992 (+)