XLOC_011057 (eif3ha)


Basic Information

Item Value
gene id XLOC_011057
gene name eif3ha
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 48282321 ~ 48400639 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021581
GCTTCTCTCCGGAATAACTTTCTTACACGTGCTTAGTTCCGATTCCTATCCATCTGAAAATGGCCAGTCGCAAAGAGTCCGCCGCTTCAGGTTCAAACCCGCTGGATTTCCCGGTCAAACAGATCCAGGTCGATGGGCTGGTGGTGTTGAAGATCATTAAGCACTACCAGGAGGAGGGCCAGGGCAGCGAGGTGGTTCAGGGTGTTCTGCTCGGCCTGGTGGTTGAAGACCGTCTGGAGATCACAAACTGCTTCCCTTTCCCTCAGCACACCGAAGACGATGTCGAATTCGATGAAGTTCAATACCAGATGGAGATGATGAGGAGTCTCCGGCATGTGAACATCGACCATCTTCACGTCGGCTGGTATCAGTCCACGTATTATGGCTCTTTCGTCAGCCGAGCCCTGCTGGACTCGCAGTTCAGCTACCAGCACGCCATTGAGGAGTCCGTGGTGCTTATTTATGATCCCCTAAAGACGGCGCAGGGCTCTCTCTGTCTGAAGGCCTACAGATTGACCCCCAAATTGATGGAGATCTGCAAGGAGAAAGACTTCACTCCTGAGGGGCTGAAGAAGGCCGCCGTTGCCTATGAGCACATGTTCGAGGAGGTTCCCATCTTCATCAAGAACTCTCATCTCATAAACGTGCTGATGTGGGATCTGCAGGAGAAGAGCACGCTGGCTGACAAGCATGAGCTGCTCAATCTGTCAAGCAGTAACCACCTGGAGAAGAGCCTCCAGCTGCTGATGGACCGCGTGGACGACATGAGCCAAGATATCGTCAAGTACAACACATACTGCCGCAACCTCAGCAAACAACAGCAGCAGAAGCAGCAGTATCAGCAGAGGCGTCAGCAGGAGAATGCGCAGCGGCAGAGTCGTGGAGAGCCTCCTCTGCCAGAAGAAGACATCAGTAAGATGTTCAAAGCTCCTCAGGCTCCTCCACGCATGGACACGCTCCTCATCGCAGGACAAATCAACAACTACTGTCAGAACATTAAGGAGTTCACCTCACAGAACCTTGGCAAACTCTTCATGGCAGAAGCTCTGCAGAGCAACAGCagctgaagagagagagagagagagcgagctgaAATATGAGCGGCGACTCAGCCTTTCACCATCACTCAACAGCAGCACACCATCATAATCAGCTCCAGGAGAGATCTTgtacactattatgtttttttaaatgtgtgcaaTAAAATGATGCATCTCTCA

Function

symbol description
eif3ha Predicted to enable metallopeptidase activity. Predicted to contribute to translation initiation factor activity. Acts upstream of or within several processes, including lateral line development; regulation of translation; and vasculature development. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic 43S preinitiation complex and eukaryotic translation initiation factor 3 complex. Predicted to be active in cytosol and polysomal ribosome. Is expressed in several structures, including gut; heart; liver; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in breast cancer; prostate cancer; and prostate carcinoma. Orthologous to human EIF3H (eukaryotic translation initiation factor 3 subunit H).

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0006417 regulation of translation biological_process
GO:0048882 lateral line development biological_process
GO:0007420 brain development biological_process
GO:0001944 vasculature development biological_process
GO:0005829 cytosol cellular_component
GO:0042788 polysomal ribosome cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008237 metallopeptidase activity molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040808-19 Predicted to enable metallopeptidase activity. Predicted to contribute to translation initiation factor activity. Acts upstream of or within several processes, including lateral line development; regulation of translation; and vasculature development. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic 43S preinitiation complex and eukaryotic translation initiation factor 3 complex. Predicted to be active in cytosol and polysomal ribosome. Is expressed in several structures, including gut; heart; liver; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in breast cancer; prostate cancer; and prostate carcinoma. Orthologous to human EIF3H (eukaryotic translation initiation factor 3 subunit H).

Ensembl:

ensembl_id ENSDARG00000102452

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021581 True 1220 mRNA 0.51 8 48282321 48400639

Neighbor

gene id symbol gene type direction distance location
XLOC_011056 NA coding downstream 62011 48219366 ~ 48220310 (-)
XLOC_011053 csmd3a coding downstream 207781 47531516 ~ 48074540 (-)
XLOC_011055 NA coding downstream 225829 48043384 ~ 48056492 (-)
XLOC_011054 CR388140.2 coding downstream 339064 47943143 ~ 47943257 (-)
XLOC_011052 cthrc1b coding downstream 799179 47454586 ~ 47483142 (-)
XLOC_011058 rad21a coding upstream 8427 48409066 ~ 48430272 (-)
XLOC_011059 notchl coding upstream 244578 48645217 ~ 48673938 (-)
XLOC_011060 FQ976914.1 coding upstream 390587 48791226 ~ 48914757 (-)
XLOC_011061 NA coding upstream 419711 48820350 ~ 48821345 (-)
XLOC_011062 NA coding upstream 755221 49155860 ~ 49184484 (-)
XLOC_010626 CR392024.2 misc downstream 27387146 20895112 ~ 20895175 (-)
XLOC_011049 NA non-coding downstream 977652 47302446 ~ 47304669 (-)
XLOC_011046 NA non-coding downstream 1472109 46806237 ~ 46810212 (-)
XLOC_011063 NA non-coding upstream 814839 49215478 ~ 49222093 (-)
XLOC_011064 NA non-coding upstream 835769 49236408 ~ 49237101 (-)
XLOC_011068 CR855313.1 non-coding upstream 1594839 49995478 ~ 49995594 (-)

Expression


Co-expression Network