XLOC_011059 (notchl)


Basic Information

Item Value
gene id XLOC_011059
gene name notchl
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 48645217 ~ 48673938 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021585
ACACTTCACAACGTTTTACTGCACTGATAACACGTCTGAGGAGAGCATCTGAACACACCAGAGAAGCAGATGAGAGGATTTGctgattcacacacattttaggaGGATTCGTGAAGAGGATCTGGAGCCCTGAATCTGCTTCTGTGGTTTCTGTCATGCACTTGATACTGAGGTTTACCTTCATACTGTGGTCTCTGTGCAGATCCGCTCAAGGATCCCCCAATGAGCCGTACAGCAGCTGTCCGGCAGGAAAGTCGTGTCAGGCCAGGTTTGGAAATGGAGTGTGTGATCAGGACTGCTCGACTTCTGACTGTCTGAGAGATGGATTCGACTGCCTCAAAGACAAAGGCACCTGCGTACCAGGACATATTCAATACTGTCGAAATCATTATGACAACGGCCACTGTGACCAGGGATGCAACAACGCTGCATGCGGATGGGATGGTTCAGACTGCCACAGGAATCATTACCCAATATGGGCCAAAGGCAGTCTGATTCTGCACACCCGGATCCCCTTCCTGAAGGGTCAGATCCAGAACAGCTCTCTGTTGTGGCCCTTGAGCACCGTCCTGCAGACCAGCGTCAAACTCAGAGGAACGGCTCCTCTCCAGACCAGCACAGACCTGAACACTGTAGACACACGGCAGCTCGCTGAGAtgtacacacacactcctgcctCCGACAGCGATGGGTCTGTGTTGTTCCTCCAGCTGGACAACAGGCCCTGCTCTCGTCTTCTCTCCACCTGTTTTGATTACGCTGCTGAAGCCGCTCACTTTCTTCAGGCTGTCCTGACACAAAACCAGCCCTCATTCCCCATGATCCCGGAGATCCAGGCGGCCATAATCAGTGTTCGAGGAGTCGATGAGGAGATCGGAGCCAGAGATGAGCCGAAGCTGCCAAAAGAAGAACGCAACGCTCGTGACTCTCCGGTGTGGATGTGGCCAGTGGTCGGAGTGGCGACGGGTCTCTGCGTGGCTCTGGCCGTCATCATTACCGTGCTTTTACTGTGGTTTAAGAGGAGACGAGCGCGGAGGGATGGAGCAGACCGACTGCGGCACAGATCCACACTCACCGACAGCAATAACGCCAGCAAAGCCTGGACTCGACACTCGGAGGAGAAGAGAAGCAGGTCAGGCCGAGAGAAAGACAGAAACGGGATGAAGAAGAACAAGAAAGGGAAGGAGTCGGGAAAGAGGCGTAAGGAGCCGCTTGGTGAGGACGCAATCCGCATGCGACCCCTGAGGAAGGAACTGGACATCGGAAGCGACACTGATGTGACCCAGAGCTCCATGGAAGACATCAATAAGAGCATCTGCGACCACAGATCACCAGAACAAAAGCACTACAGTCACCAACAGCCCCGCATGCTGGCTCCCCCTAGAGGATGGGAACGAAACGCTGTTCCTGCGCCTCAAAGACCACCAAGAACTGCTGCACCGGTGCAGTGGTGTGGGCCGGACGGGTCTGTGGTTCTGATCCGGGCGGTCAGAAGTGGCCTGGACCGAGTGGTGCTGGAGCTCCTGAGAGCGGGAGTACCGGTTAATAACACCGATCACACTGGGAGATCTGCCCTCCACTGGGCGTGCTCAGTAAATCACCTCCCATTGACACGGACTCTCATCCGCTACGGTGCTGCAGTGGACTTACAGGACCATAAGGGCGAAACAGCTTTGTTTCTCTCCGCTCTCCATGGCTGCTTTGACACTGCTCGATTCCTGCTGCTAAACGGTGCCAATCAAGACCTGACTGACTGCAAGGGTCGGCGACCGCTGGACGTGGCTAGAGAAGGATTACATCATCAAGTTCTGGAGCTCCTATTGGCTCACAGAGTTCAGAGGGCGCCAGTTCCTCTAGATCCCTCCACTGAGGTGCTCTGGGATGATCGCACATATGTGTTTTCTCCTTGGGTCGCTTCACCTCCATGTCTGCCTGGAAGAAGTGCCTCGTTTTCTGGGGTGATAAATCACAGAGGGATGCCAACACCTCCACCAGATGATTGGCAGATGGCCAGAGCTCAATGCTCCTCCCCCCAGAACTGGCGTCCAGCCCCCAACCAATCAGCAACAGCTCTGGTCAGCCCCAGGATTCTGGGCCGTCCATCTCGCCCAATCAGCACTCTCCAGGAAGTGACATCAGAGGCAGAAGATGAGGAAAGAGAGCTTCTACAAGACAACGCTCGAGCAGCAACACCTCACTTCCTGTGTCCACAGCCAGCCCCTCGGCAGCGCTCCTTCTCCTGTACCCAGCATGCCCTGAACCGCCGCTCCAGCAACAACCAATCAGAGCTCTCCATGGCTCAGCCTGCAGATAAACTAGCCAATGAGCCAGTGGAAATAGTGACTGTGCTGCACCAGAGAGAATCGACCAGCCAATCAGAAAGCAAAATCCCAGTCAGCGGCTCCGGATCGGCTCAGATGGACTCTGAGAGGGAAAATATGAGGAACAACAAAATCCAGAGCGAGAGGGTCAGCAGTGACTACAACATCACCATCCAGAGCAGCATGTGAGAGAGCAAACAGAGACGTcagaccagtgtttcccaaccctgttcctagaggcacaccaacagtacatattttgcatGTCTCCCTTACCTGACCCAATaccttcaggttttggagtctcttcatatgctctgatgagttgattcaggtgtgtttgattagggagaggatGAAAATGTATATTGtcggtgtgccttcaggaacaaggttgggaaacactgcatcAGAACAACCGAAAATGCACACTAAAATCATCTTCCTGAAATTTTATTTGGCCAGAAATTCGGCACCAAATCAAAATCAACTCAAATTTGCATGAAGAAAAACGTGCTTTTAACAAATAagcttttttaatgtatattctTCTTGATTATTCCTTTATCACTGTAATGTTTGGAtgctttattgtaatttaataaaactcaagatata

Function

symbol description
notchl Predicted to act upstream of or within Notch signaling pathway and cell differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070220-2 Predicted to act upstream of or within Notch signaling pathway and cell differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000088308

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021585 True 2939 mRNA 0.52 11 48645217 48673938

Neighbor

gene id symbol gene type direction distance location
XLOC_011058 rad21a coding downstream 214945 48409066 ~ 48430272 (-)
XLOC_011057 eif3ha coding downstream 244578 48282321 ~ 48400639 (-)
XLOC_011056 NA coding downstream 424907 48219366 ~ 48220310 (-)
XLOC_011053 csmd3a coding downstream 570677 47531516 ~ 48074540 (-)
XLOC_011060 FQ976914.1 coding upstream 117288 48791226 ~ 48914757 (-)
XLOC_011061 NA coding upstream 146412 48820350 ~ 48821345 (-)
XLOC_011062 NA coding upstream 481922 49155860 ~ 49184484 (-)
XLOC_011063 NA coding upstream 541540 49215478 ~ 49222093 (-)
XLOC_011064 NA coding upstream 562470 49236408 ~ 49237101 (-)
XLOC_010626 CR392024.2 misc downstream 27750042 20895112 ~ 20895175 (-)
XLOC_011055 NA non-coding downstream 588725 48043384 ~ 48056492 (-)
XLOC_011054 CR388140.2 non-coding downstream 701960 47943143 ~ 47943257 (-)
XLOC_011049 NA non-coding downstream 1340548 47302446 ~ 47304669 (-)
XLOC_011046 NA non-coding downstream 1835005 46806237 ~ 46810212 (-)
XLOC_011068 CR855313.1 non-coding upstream 1321540 49995478 ~ 49995594 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G138057 NA unknown CI01000027 null 93559 ~ 96727 (+)