Gene
RNA
| Item | Value |
|---|---|
| gene id | G328724 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000112 |
| NCBI id | null |
| chromosome length | 5247617 |
| location | 1504190 ~ 1504765 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU373630 | False | 576 | lncRNA | 0.54 | 1 | 1504190 | 1504765 |
| TU373628 | True | 404 | lncRNA | 0.52 | 1 | 1504362 | 1504765 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000112_01486968_01488917 | NA | coding | downstream | 14689 | 1485371 ~ 1489501 (-) |
| CI01000112_01437714_01440420 | NA | coding | downstream | 63682 | 1437457 ~ 1440508 (-) |
| CI01000112_01367862_01375489 | NA | coding | downstream | 126816 | 1367451 ~ 1377374 (-) |
| CI01000112_01324078_01345821 | SEPT9, SEPT9A, SEPT9B | coding | downstream | 158369 | 1324078 ~ 1345821 (-) |
| CI01000112_01120464_01124295 | NA | coding | downstream | 379895 | 1120087 ~ 1124295 (-) |
| CI01000112_01517833_01520418 | NA | coding | upstream | 12963 | 1517728 ~ 1520546 (-) |
| CI01000112_01772132_01776695 | PRPSAP1 | coding | upstream | 266982 | 1771747 ~ 1776853 (-) |
| CI01000112_01953215_01962043 | NA | coding | upstream | 448393 | 1953158 ~ 1962751 (-) |
| CI01000112_01967374_01971965 | NA | coding | upstream | 462293 | 1967058 ~ 1971965 (-) |
| CI01000112_01999128_02000283 | NA | coding | upstream | 494354 | 1999119 ~ 2000283 (-) |
| G328719 | NA | non-coding | downstream | 5772 | 1497768 ~ 1498418 (-) |
| G328718 | NA | non-coding | downstream | 8120 | 1495662 ~ 1496070 (-) |
| G328717 | NA | non-coding | downstream | 8910 | 1495057 ~ 1495280 (-) |
| G328709 | NA | non-coding | downstream | 9822 | 1493969 ~ 1494368 (-) |
| G328715 | NA | non-coding | downstream | 34675 | 1469313 ~ 1469515 (-) |
| G328726 | NA | non-coding | upstream | 3152 | 1507917 ~ 1508123 (-) |
| G328705 | NA | non-coding | upstream | 4378 | 1509143 ~ 1510448 (-) |
| G328702 | NA | non-coding | upstream | 7042 | 1511807 ~ 1512374 (-) |
| G328734 | NA | non-coding | upstream | 49978 | 1554743 ~ 1555364 (-) |
| G328735 | NA | non-coding | upstream | 52479 | 1557244 ~ 1557484 (-) |
| G328642 | NA | other | downstream | 217232 | 1286655 ~ 1286958 (-) |
| G328641 | NA | other | downstream | 217666 | 1286092 ~ 1286524 (-) |
| CI01000112_00810157_00821637 | TRIM25 | other | downstream | 635554 | 808545 ~ 821932 (-) |
| CI01000112_00792970_00793455 | CQ067, CLG09H17ORF67, C9H17ORF67 | other | downstream | 709244 | 792271 ~ 793455 (-) |
| G328332 | NA | other | downstream | 722406 | 780164 ~ 781784 (-) |
| G329587 | NA | other | upstream | 125011 | 1629776 ~ 1633322 (-) |
| G329559 | NA | other | upstream | 293251 | 1791084 ~ 1809739 (-) |
| G329569 | NA | other | upstream | 486901 | 1991666 ~ 1997859 (-) |
| G329672 | NA | other | upstream | 511939 | 2016704 ~ 2019453 (-) |
| CI01000112_03068505_03072256 | NA | other | upstream | 1562555 | 3067320 ~ 3072879 (-) |
