CI01000133_00023486_00027675 (ST8SIA6)


Basic Information

Item Value
gene id CI01000133_00023486_00027675
gene name ST8SIA6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000133
NCBI id null
chromosome length 2254871
location 23486 ~ 27878 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000133_00023486_00027675.mRNA
GCTGTGGTCACACAGAATAACACCCCATTGGGGTCAATTGTTATCTATGATGGAGAGAGGAGAAAGCCAGTACAGGTGACAAAAGCCCTGTTCAACATCTTGGCTAAGGAGCAGCCCTTTGGAAATGCTACATGGGAGTCATGTGCCGTGGTAGGGAATGGTGGTATTTTGACCAATAGCAGCTGTGGAGAAGAAATTAATTCTGCCCAGTTTGTCATTAGATGCAACCTTCCACCACTGGATAACAGATATGAGAAAGATGTGGGCAACAAAACCAACCTGGTGACTGCAAATCCCAGCATCCTCCATGAGAAGTTCAGTGGTCTGATGGAGCGCCGTCGTCCATTTGTGGAAAGCCTTCGTCCTTATGGACAAGCCTTAATGCTGCTGCCAGCATTCTCCTATGGTCACAACACGCCTGTATCCCTGCGTGCCTTTTACACACTGGAGGACTTTGGCAACAATGGCCCGCTGCCTGTTTTCCTGAATCCAGAATATATGAGAAGGTTGTCAGAGTTTTGGCGTGGGCGAGGCCTTAACTCGGTTCGTCCCAGCACAGGACTTATCATGGCCAGCCTAGCACTAGAAATCTGTGCTAACGTCCATTTGTATGGTTTTTGGCCTTTCAGTGTACATCCAGCGGACAGACGACGAATCACCAATCATTACTATGATGATCGGGAGAGTAAGAAGAATGTGCATTCTATGCCGACCGAGTTCGAACATTTATTTAAACTCCACAAGCAAGGTGTGGTTCGCATACACCTGGGGGAGTGTCAACCCGCAGGCAGTTTTGCTGTATACATCACAAGTGCCAATCTGTCCTCTTTAGCATTTATTAGCAGTGAATGTAAATTTGATATCAGGTGTGCAGAAATAGCTGTGAAAGCAGCATTGAGTTATAACTCTAGACTTTGATTCCAGGACTGTCCGGATGTTTGGAAGCATGATGTCACATTCACAGTGTGAAACAATAATAAGCATGGATGTGGTTAGTGTAACTCATCAGAGTTAAAAACAAGAGCTGTTGTAAAAGCTGAAAATAGTGGCAAATTTCAATGTGCCAATTCTGAATGCTCTATCTGAGTATGAAATTACTCTCACGGCAATCGCTAATGTAA

Function

symbol description
st8sia6 Predicted to enable alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity. Acts upstream of or within olfactory nerve formation and olfactory placode morphogenesis. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; central nervous system; myotome; pleuroperitoneal region; and unfertilized egg. Orthologous to human ST8SIA6 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6).

NR:

description
St8sia6 protein, partial

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
K06615 SIAT8F; alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8F)

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000133_00023486_00027675.mRNA True 1121 mRNA 0.45 5 23486 27878

Neighbor

gene id symbol gene type direction distance location
CI01000133_00000117_00001476 RPL19.L, RPL19 coding upstream 21963 117 ~ 1523 (+)
CI01000133_00106756_00108024 KCNJ12B coding downstream 78878 106756 ~ 108445 (+)
CI01000133_00229073_00230889 NA coding downstream 201195 229073 ~ 231122 (+)
CI01000133_00246519_00248635 NA coding downstream 218641 246519 ~ 248697 (+)
CI01000133_00297340_00299091 NA coding downstream 267401 295279 ~ 299091 (+)
CI01000133_00868719_00901792 CERK coding downstream 840841 868719 ~ 901827 (+)
G344946 NA non-coding upstream 11152 12129 ~ 12334 (+)
G344955 NA non-coding downstream 7926 35804 ~ 36036 (+)
G344968 NA non-coding downstream 42718 70596 ~ 71759 (+)
G344928 NA non-coding downstream 55010 82888 ~ 89075 (+)
G344972 NA non-coding downstream 64980 92858 ~ 93210 (+)
G344973 NA non-coding downstream 68181 96059 ~ 96286 (+)
G344985 NA other downstream 114894 142772 ~ 147181 (+)
G346486 NA other downstream 2213975 2241853 ~ 2243321 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025187 st8sia6 coding NC_007114.7 CM002887.2 16265924 ~ 16285259 (+)