XLOC_025187 (st8sia6)


Basic Information

Item Value
gene id XLOC_025187
gene name st8sia6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16265924 ~ 16285259 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049735
CGGCAGCAGCATCTGCATTTGAATGAGAGCACACGCATGTCCGCGGATATGTGTGCCACCGAGACCGTGTGTAAGAGTGGATGCGCGTTATGAGGACTCTTATGCGCTGGCTGCTTCCTGTCATCCTTCTGTGCTCTTTCTGCAGTGTGGCCTTCTGGATTTTCATCTCCAACAATAATGTAATCCCTCATCCTGCATCTAGGATTCCTCAAAAAGCCTCCAACACACAATCTTGTAAGGCATGCAAAGACAGTGTAATCATTGGCAAAGCACTGGGAAACTATTCAAACAGCTGGAAAAAACACGAGGCAAACTATAAAAGATTCAGGTTATTACTAAATGAGAAATGCCATGCTGTgtctaaagctgtggtcacacagAATAACACTCCTCTGGGGTCAAATGTTGTCTATGATGGCGAAAGAAGAAAGCCACTACAGGTGACCCAAGCCCTGTACAACATCTTGGCTAAGgaACAACCATTTGGAAATGCGACATGGGAGTCATGTGCTGTAGTGGGGAATGGAGGCGTTTTGGCCAATAGCAGTTGTGGAGAAGAAATCAATTCAGCCCAGTTTGTCATTAGATGCAACCTTCCACCACTTGATGACAGATATGAGAAAGATGTGGGAAACAAAACCAATCTTGTCACAGCAAATCCCAGCATCCTACATGAGAAGTACAGTGGTCTTATGGAGCGGCGGCGTCCATTTGTGGAAAGCCTTCATTCATACGGTCAAGCCTTATTACTGCTGCCAGCCTTCTCCTACGGTCACAACACGCCTGTATCCCTGCGTGCCTTTTACACACTGGAGGACTTTGGCAGAGAGGGCCCGCTGCCCATTTTTCTGAATCCAGAATACTTGAGAAAGTTGACAAAGTTTTGGCGCGAGCAAGGCCTGAACTCTGTTCGCCCCAGCACTGGGCTCATCATGGCCAGCTTGGCTCTAGAAATCTGTACTAACGTTCATTTGTATGGTTTTTGGCCCTTTGGTAAACATCCGAACGACAGTCGACCCATCACCAACCATTATTACGATAATCGGGAGAGCAAGAAAAATGTGCATTCAATGCCGAGCGAGTTCGAACAATTACTGAAACTCCATAAGCAAGGTGTGGTTCACATACACCTGGGAGAATGTCAACCCGCTCATAGATGAAACACGAGGCTGGTGGGAAATGTAAGGTACGTTTGGTGTGGATTGCATACAGAATACCTCTGtttatttaaagggttagttcacacaaaaattaaaactcGGTTATTAATAACGTACTAATAATCTTTCTTCATATTCAGAGtaggcgatgtcgaccaatttggcatcgtactaTGTCTAATCTGAAACATTGCGATGGGCAATAGCATCGGTGAATTAATTAGGGGGACGAGATCCATcattgataaactgtccgacgtgcactgctctctggggttttgtgctcaaagcacccgctgactgcctggagctcaaaTGCAGGCATACACTGCAGtccatgcctgtgtgtgtgtggtcacgtgatgtgcgttttcagcagtatagtttggacgtggatcgttttcattataaaatgtcattttaaaaaagattttagtgtaaatggggcctaagtgtgtatttttagcaagcgggttgctgctgcgacgcGGGCAGGGCGAAGCATCGAAGTCCAGAAAAAGAACTTTAAACATTGTCAAAAACTTTCATGTGACTTCAGTAGTTCAACTGTAATAATATGAAGCTTCCAAACCTAAAAATGACTTTGCTCACCACTGCCTCCTTTTCCAACATTCTCACTGCAATTCGTGACTTTTTAATTCAGTGTCTAATTTGTGTGAATTTGTATGATCACATTTGTACAATTAAGCATGATTTACTCATCTCCCAAAGACggttaagccgcctttccactgcacacgacattcgGGCAAGACTGTCAGAATACGTCCCCTTGTAGCTGTCGCACTGAATTTTCACTTTTGtagtgcaccatgggagagaggctgttctcgcagtgtccgaaatatAGGATttcaaaagcaagagcctttattctctgtgcgttcaccatggttaaataaatgaatgctagAAACTCATAAATCGCTAAAacttttggagggaatgtggagacgacataaaaaaatgatattttttatgACTCATTTATGAAAAGAAATGTTCTTTTAATATAGACCTTTTTTCTGATtccaaaaataatgataaaataaaaactatttctcATCTCGTGCACACAGACCTGCTTGgaaaacactggaatacatcacatccggtcggtgGCAAACGGTCTAGTCGCaagagttcaaatattttaacagaCCCGCATCTAtaattgcatttaaatttttcgcatacggagatgatcggaactcccagctcccagactactctccattggaaatgaatgacttcctgtCTATCACTTGtcatttgtcgtgtgcagtggaaaagcGGCTTTAGGTTTATGGGTAGTGTTTggtgcctccttttaaaaaacttacattttcagACTAAACTCttatgaattcgtacaaattggccactaaactgacaaaatgtaaaacagttaCGTTTCcttatgagatcaggctggcttttCTGCAATAGTACACTGTACAGTATTATGGCCGGTACAATGTATTTAACATTAGGAGCATGTTGCATATAGAAAATCTGACCTGGAAGActgtagggcaggggtgtcaagcTCATTTTCAAAGGGCCAGGGCAAATATAACTGTAAGTCTGATGTTAGAATTGCCCACTTACATGTTGTTAAATAGTTTTCTCTTAATTGCATTATATCATATTGAAGTAACAAATTCAGTGGGGGAATAAGTATTGATCACatcagcatttttctcagactttAAATTTTTTCCCAGATGTTGGTAGCAACATCTGAAATCCATATTTGCAAAGGcaacaaatataattaaattactaattaatttatgcataataaaatgaaatgacgcagggaaaaagtattgaacacatgaagaaaggaagttgtataaaggcagtaaaagcccagacagcagctgaaatctctcagaagttcttcagcaaccccCTGCTCTTAATCATTGTAAAttgatatcagctgcttcagtccaacatctacattatcaggatgatgaagatgaaaccatggtgagcatttcagcaagacaatggtccaaagcacagccaaggaaactctcaaatgctttcagagaaagataACCAAGCTATGAAATGGCCCAACCAagcacctgacttaaatccaatagattGATTCCAATAGAATCCAGATTTGGTTCACAAAACCAGCATGCATTATGGGAGATATAGTTTAtaatcaatatataatataaagtagcATGGACTTTTGTTATAATGCTGGGTTCATACCAAACGTGAAGCACCACATCACTCACTCTAGATTACTCACAAGATGTTTTTCACCTCATATGAATTTTACGTTTGAGTTAAATATCTCAAACTTTGCCAGAAGATTTTTGCAGCAAATGCGTCACCCAGTCTGCATTTACATTGTATATAATCTATTTGCACGAATACTTAAGTTCGCATTTTCCTCGCAGTCCAAATAAAAATCTACGGCATTTGCCTTGTGGGCCTTGAGTTTGACACATGACAAGTGAATAAAGTCATTTTTACAGGTGTTTCTCAACACAAAATTGTTCTTGGGCTTTTGTATGCTTacagttaaaccactgaagtcacatggaatatttgtttattgtttttctgAATGTTATGGGTTGTTTATGGAGGAAGAGAGAGCTGTTTAGAGTGTATAAAATGGCTTAACTTGTGTTATTAAGATGAAAGATGGACATTGGAACGAAATCAGGAATAATTAATGaccaaatttacatttttgtgtgaactaaccctttcagAAGAACAAAACGTTTTGTTTAGAAGGGTGTGTAGGTAAGAAGCAGTTGTAGATGTGCACTGAATCTGTATTGCTTGTATTTGCTGTGCACTCTTGCATGCACAAACATATCATCAGTTTTGAGTTACTTTGAGTTAACCTTGTGCACAAAAATAGCTAAAAAACGAATGTACCAACTTCAGCCTTGGTGTACTGTGAAAGAACTGTAATTAGGAAAATGACTCCCAGAGTTGCATTCCTTAAACACTCCTTAAGCGGTCTTGCCTTAGTCAGCCTTTACCGGTGCTTCTCCAGCACTGTTGCATTCATCACAAGTGCCAGTCTGTCCTCTTTGGCAGTGAATGTGAATCTGATCTCAGGTGTGCAGAAATAGCTGTAAAAAGCAGCACTGAATTTATAACGCAAGACTGTGAGTTTAGGAAACGTCTGCCATATATAAAAAGCTTCAAAGTATGCTGTCACATTCACCGTGTGAACTAAAAGGAAGCATAGATGTGGTTTAGCTTAAAGTAAAACACAGAAGGTGTAAATGCTGACAATAGTGCCAATTTTCAGCGTGCCAGTTTTGAATGCCCTGTATTTACACAGAAATCACTGTAATGTAAATTAAAGTTGCTattgattattaattaaatttcactTTCTGATCAAA

Function

symbol description
st8sia6 Predicted to enable alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity. Acts upstream of or within olfactory nerve formation and olfactory placode morphogenesis. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; central nervous system; myotome; pleuroperitoneal region; and unfertilized egg. Orthologous to human ST8SIA6 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6).

GO:

id name namespace
GO:0009311 oligosaccharide metabolic process biological_process
GO:0021628 olfactory nerve formation biological_process
GO:0006486 protein glycosylation biological_process
GO:0006491 N-glycan processing biological_process
GO:0071699 olfactory placode morphogenesis biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0003828 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity molecular_function
GO:0008373 sialyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060322-9 Predicted to enable alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity. Acts upstream of or within olfactory nerve formation and olfactory placode morphogenesis. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; central nervous system; myotome; pleuroperitoneal region; and unfertilized egg. Orthologous to human ST8SIA6 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6).

Ensembl:

ensembl_id ENSDARG00000021195

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049735 True 4582 mRNA 0.40 7 16265924 16285259

Neighbor

gene id symbol gene type direction distance location
XLOC_025185 NA coding upstream 24584 16186593 ~ 16241340 (+)
XLOC_025186 rpl19 coding upstream 33482 16229911 ~ 16232442 (+)
XLOC_025184 NA coding upstream 104465 16153224 ~ 16161459 (+)
XLOC_025183 CR387933.1 coding upstream 210192 16055009 ~ 16055732 (+)
XLOC_025182 mapk8ip3 coding upstream 277196 15907297 ~ 15988728 (+)
XLOC_025188 CR388224.1 coding downstream 87753 16373012 ~ 16373127 (+)
XLOC_025189 kcnj12b coding downstream 164231 16449490 ~ 16458018 (+)
XLOC_025190 slc6a16a coding downstream 281102 16566361 ~ 16591648 (+)
XLOC_025191 slc17a7a coding downstream 327315 16612574 ~ 16654088 (+)
XLOC_025192 zgc:55558 coding downstream 376950 16662209 ~ 16683623 (+)
XLOC_025429 BX649540.1 misc downstream 13963480 30248739 ~ 30249036 (+)
XLOC_025180 NA non-coding upstream 399522 15865921 ~ 15866402 (+)
XLOC_025176 BX914211.1 non-coding upstream 470528 15755723 ~ 15795396 (+)
XLOC_025197 BX470185.1 non-coding downstream 589142 16874401 ~ 16883304 (+)
XLOC_025203 CU207238.1 non-coding downstream 1109980 17395239 ~ 17461885 (+)
XLOC_025215 NA non-coding downstream 1755354 18040613 ~ 18061783 (+)
XLOC_025218 NA non-coding downstream 1904350 18189609 ~ 18197126 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000133_00023486_00027675 ST8SIA6 coding CI01000133 null 23486 ~ 27878 (+)