XLOC_025192 (zgc:55558)


Basic Information

Item Value
gene id XLOC_025192
gene name zgc:55558
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16662209 ~ 16683623 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049743
GTAATGCTAGTTTCTGAATATTGATTTTAGTTCTGCCATCTGCTGGTTAGAAAACTGCCCTGCTCCAGTTAGGCTCCAACCACACCTGGCTAATGACTCCAGACAGGTGAGTTTGATCAGGAttgaagctaaaaaaaaaaaaaagctaaatgtgGATCTTGGGGAGTAAAGGTTGAGGACTACCATGATTTACTTAAGTTACTTGAGAATAAATATCCAGCAAAGACCCAAATTAAATAATAgtggagcacactcatgcatactgttatgtgatgcattgtgtgtattaTTTAATAGATAGATAGGTCTTCAatttagttttgaactgagagagtgtgtctgagccttggacgttatcaggaaggctattccagagtttaagaAGCATAAATGAGAAGGATTGACTTcatttagtagactttgctaaaCTGGGTACTcaagaagccctgagttttgagatcttaaagagcttgttggattgtagcgagacagaaggtttgTTAGGTAAacgagctagattatttaaaatggttttgaatATTTCTGATTATAGATTTAGACGCAGAGTTTTGCCATCCGCTGGTTAAAACTGTGCTGCAGTTCAGCTCTAACCACACCTGGGTGAATCAGCTAATCACTACAGGCAGAATGACGGAATACAAGCTGGTCGTTGTCGGTGCGGGTGGTGTTGGGAAAAGTGCACTGACCATCCAGCTCATTCAGAATCACTTCGTAGATGAGTACGATCCCACAATTGAGGATTCATACAGAAAGCAGGTTGTGATTGATGGAGAGACTTGTTTGCTGGATATCCTGGACACTGCAGGTCAGGAGGAGTACAGTGCCATGAGAGACCAGTATATGAGGACAGGAGAGGGATTTCTTTGTGTGTTTGCCATCAACAATGCCAAGTCCTTTGAGGACGTACATCTTTACAGGGAGCAAATAAACCGTGTCAAAGACAGCGATAATGTCCCGATGGTGCTGGTGGGGAACAAAAGTGACCTGACATCTCGTACTGTAGACACACGTCAAGCCCAAGAACTGGCCAGAAGTTACGGGGTCCCATTTGTTGAAACATCGGCCAAGACGCGTCAGGGAGTGGAGGAGGCCTTTTACTCTCTCGTGAGGGAGATCCGAAGATACAAGGAGACCAACCGCAGCAATAAGAAGAGCAAAAAGCACACACAGAGACGTTGCACTCTTTTATAGCGATACACACGTACAGCCTCACACTGCACCCCCTGTGATTAGCAATGCACTCAAGgcctcacatacacacacacacgcacacacattactgtagcatcacacacacacacatttcattttCTTACCGCTCCCTCAGTTTTTACACCCCCATCCTTTGAGCAATAGGAACCtgatgtatgtgtttgtatgtctgtGCACACGAGACCTCGACGAGAACTGTGGAATTGTTCTGTAAAAGACATTTTGGCAACATATTATCAAAAGTTGGCTTGACGAATGCGTCTCAAGTGGACTTGCCACTGCTTTTCAGTTTTGTGCTGACATTGGTCAGGGTTACCGTTGTACTTTAGAACCACAGGAAATGAGAAACTGACCTTTATAACAAATTAACATGGCGGTGAAGGGATGTTCTACAAATCGGTAATGGGTAACTGTTTTTTTAAGTAAGTTTGTTTCATCTCCATGACCCTGTGAGCCAATCTAAACATTTGTGTGGATTTGTTAGCAATGGTTTGGAATGAGGAAGCTAATAGGTGACCTGTGGGAAAGCACATTCAGAACCACTAACAACGTTTCCAACCCATGGATTGTGGGATTTATTTTTCAATACTTGCACAACTTAATGTCACTATAAAAGGGGGCTACTGTAGGTTTCGCCCTCTTCCCTTTAGGACTGTTGTGCTAAATTTACATTTCATACAGTTGTCATGAATACTGAATTTACTCtaagtttttattaaatgtcattatacTCCACATAACTAAAATTCATAAATCAAAgctcactttttatttttaccaacAGTATTCCTTGGTGAAGTCCTCTATTTTTGTAATTGCTAGTACTGGACTGTTTGGGTATTGTATTGGACCGGAACGTTTCACGTATTATAATGAACTGTGTAAAATGCCATTGGTTCCCACCTGTGATGAGGCTCTGTTTGGTGAGGTGGTTTCTctaaatcataggtctcaaactcaattccttgagggctacagctctgcacagttttgatcCAACCccgatcaaacacagctgatctaaaaACAGTCTTGAACACTgttagctgtgtttgatcaggattggagctttggagctaaactgtgcagagctgtagccctccaggaattgagtttgagccCTATGTTCTAAATGTTGTAGATTGACAGAAGAGACTGTAATAGTTTTGGTTCAGGATAAACGATGTGACCAAAACTTGTGATCAATGCATTCCCTTTGCCACATTGATAAATGTAGTTATATGTTTTGTGAATAAATAGACTTTTGGCTAAATGGTTGTCATTTTTTTCTCCTTCAATATTCTAATCATAGTATTCCCACACACACTGCTTTCAGAAGTATGTTTTTTAGTTTAACTCTGTTCTTGCattaaggtaaataataataaaaaataaggccAAACAacaatatagaaaatatataagTACAAATAAGCAAAGAGTACAGcagtagaaaataaattaataaaaagaaaaataaatcaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaagaaataaatagacACTCTCTTCATAACTAAGCCAGGGGCAGGGAAAATAGCTCAGCTATATacttgcatacatatacacatttattatttttatttttaaagtgtaagagGAAGGGTTGCCAAATAGTGTCAAATTTGTCAGTATTACCGCAAACTGTATATCTAACCTTTTCTATTTGCATAGACAGCATCAGATCATGCATCCAATGTACATCACTGGGTGGAGAAGGATTTTTCCAGTTCAGTGTTTTAAgccttttataattattaaacaaaaggcGAGTGCTTTTGATTGTGTAGATGACAAGGAAACATTTGTAGGGTTAGGTCCAAATAATGCTACAAGGGGGCATGGCTCAATATCTAAAAGAAAGCATTCAGAAACTGATTTAAAAATTGATGCCCAAAAAGTGTTTAGCGCTGGACAAAGCCAGAAAGTATGAAAAAGAGTGGCTGGAGCTTGTTGACACCGATCacaaagaaaaatgtttttaaacaaaaattgcctttttttaacactgtaaaacccaacagtcaactttatcaaatgaaatgagtgtagttaattcaaaatgtactgaaagttaattctactcatttgaaaagagttttgaactcagtgttgaagatcatgagttaattaaatacctcattacttcaatttaagtgaagtttcacaaactaatttcgggaAGAGAAAGACTACAGCTGGTCTCTATtgctaatcattagctagcctatcGGATCATTCAAAAATTACTATAAATATcctgcctaaacttcattccctCTCCACCCTCTAtccatcccttctccctcctcctcaattTTATTAtcggagtttgcaagttcttccTGTGTACATAAGCAAATTGTAATAACAGTCACAAGCACTTAACGTATACATACTGAATCGATTCTTATAGAACCACCATATTAACCAAAGTAtaggtaaaaaaacaaactagGGGCTCTCATAAAATACCTGACCTCGTATGCCTCCTAATGCTTATTAATAAGGTGGgaaccttgggctcatctatttccgagctcagggttctctcctgagacagcATGTCAAATTTGCTATTAGTCGAGCATTatcaaagtgtgaactcttgaagtggagtaagttcacagtactcatttatgtaacccaggttactagtgggtagtacACAGCAATATAGCAAATAGATATACCcttataaatatgagaaaaaaaacattggcagaatactcgattagataatatatattaaaattatttatttatgtaaataatttataatagagtattatacagcattcaagggaatccgcttaagtgtgacgtcacgcgaagcggcttccgggtccaagcgctttaTTCAACTGAatagggagactcatgaaatgttaataataaatgtttactaaGAGATTTAAGGCTTTAGAAAATCACGattgcagtatatatgtccatgcctaatatccgatggccagaaagtgattatttttttataaattggtaaatttttggtatttgttatgcagcaagcccagatattgttgtgtacactatgattttatatacaattaactttaatgtgtgataggaataaaacgtgatcataaacgaatgatttctccactcaaatgaatggcggcttggacccggaaacagtattacatacgtcacaaacacgtcaccacttaacaagcggatagtgctTTAGAATGACATCATCGTGGCTTCCACTATAGCGGCAGATCAGCTTTACAAGCAATAACAAATCCCTCgtctgttagcttgtgtttactgttgctatggtgattcagtgttcgcaagggaatgcagagatgtaagttgttatattaataacagtagaaaactattagatttatatcttttaatgttttaaatgcgtattaactgtgaaaattgaccattaataagatgctggaatgatttctatcatatatttttaatgaaggattgagagaaaaaacaagatttgtatctgagagtgaaatctgcacacgagtgccaccAGGAGTTTGTCTGGTTTTTcgctttgattttgaatgatttccttggtcagttcctgttttttttattgttttcattataacatgattgaaactagtgtctaaaaatgtgttttattaattaaccatttgtttggtctagtaaaacacagtattatacagagtattatacaAGTGATAGTGGAAAGTTTAAGTGAGAGAGTTtaagtaaaatgctgtcatttgtaaaaagaaaatgccaaataggagagagaaataggaaaaacacagaaattcagcagagagaagcatatacatggttatttactgttgctgtttatttagaaatgtgttaagctGAGAtaatacatacactgtaaaatgctaatggtttctttggccttgtgttttcaaggccaagtttttttttccctttgttttgttcgtttgtgcatcttcttctggtttttcatcggtgagatgttctattgacgtcagttgctggatgtgatctgctctggattcgaattaattgaagtgtgaactcttttctggatttggattgtctcaacttccatcggtgcatgtctaattgtggagttggactggcgagcctcccattAAGTGGATTATTTGAATACACCTGTTGGAAAGATACAAAGTACAACCTATTCAGCGTCATGGTAagagtgtaaatttacaacacactcacaagtgcaacatcctggatctctggaactgaatttgcaacctagttgttttgcaaaaaaaaaaaaaaatctttttgaaaGTTTATCACCTGTACTGGACTTTTGggatattttgaaatgttttaagtgaatgttttattttcatttttattttatttgtacattgtttcTTTAAAGTGTTCATTCGTTGCAATTTTTGAAGCTTTATtatgaaggtaaatcagttgcgtaactcgagagcttgcaaatgtaaatgtgagcacttgtgataataatatttgtatgtgtaggttgaaatgtacactcacagctctgatgtgaacagctgaatccctcgatttgcgcacacacacaacaatccacacacttgtgttttaaattggaagttgcagattaatagttgtgtatttgtaaaatgtcatttacaaatacaaaatgacagacacacgtgtgcacggcaaatttgattgcatcttatctctacaaccacaggtcggcactcacaacctctcagttttgtcagtacaactacaaatctcccgcgctctgacttttgctacacatctcccgcgatctctgtagcagaacccaTCTGTGCACttgcagatgcagaggcgtgagcagcgc
>TCONS_00049744
TGAATCAAGATATTATTGGCTGAATCAGTTAATGACTGCATGCTGAATGACGGAATACAAGCTGGTCGTTGTCGGTGCGGGTGGTGTTGGGAAAAGTGCACTGACCATCCAGCTCATTCAGAATCACTTCGTAGATGAGTACGATCCCACAATTGAGGATTCATACAGAAAGCAGGTTGTGATTGATGGAGAGACTTGTTTGCTGGATATCCTGGACACTGCAGGTCAGGAGGAGTACAGTGCCATGAGAGACCAGTATATGAGGACAGGAGAGGGATTTCTTTGTGTGTTTGCCATCAACAATGCCAAGTCCTTTGAGGACGTACATCTTTACAGGGAGCAAATAAACCGTGTCAAAGACAGCGATAATGTCCCGATGGTGCTGGTGGGGAACAAAAGTGACCTGACATCTCGTACTGTAGACACACGTCAAGCCCAAGAACTGGCCAGAAGTTACGGGGTCCCATTTGTTGAAACATCGGCCAAGACGCGTCAGGGAGTGGAGGAGGCCTTTTACTCTCTCGTGAGGGAGATCCGAAGATACAAGGAGACCAACCGCAGCAATAAGAAGAGCAAAAAGCACACACAGAGACGTTGCACTCTTTTATAGCGATACACACGTACAGCCTCACACTGCACCCCCTGTGATTAGCAATGCACTCAAGgcctcacatacacacacacacgcacacacattactgtagcatcacacacacacacatttcattttCTTACCGCTCCCTCAGTTTTTACACCCCCATCCTTTGAGCAATAGGAACCtgatgtatgtgtttgtatgtctgtGCACACGAGACCTCGACGAGAACTGTGGAATTGTTCTGTAAAAGACATTTTGGCAACATATTATCAAAAGTTGGCTTGACGAATGCGTCTCAAGTGGACTTGCCACTGCTTTTCAGTTTTGTGCTGACATTGGTCAGGGTTACCGTTGTACTTTAGAACCACAGGAAATGAGAAACTGACCTTTATAACAAATTAACATGGCGGTGAAGGGATGTTCTACAAATCGGTAATGGGTAACTGTTTTTTTAAGTAAGTTTGTTTCATCTCCATGACCCTGTGAGCCAATCTAAACATTTGTGTGGATTTGTTAGCAATGGTTTGGAATGAGGAAGCTAATAGGTGACCTGTGGGAAAGCACATTCAGAACCACTAACAACGTTTCCAACCCATGGATTGTGGGATTTATTTTTCAATACTTGCACAACTTAATGTCACTATAAAAGGGGGCTACTGTAGGTTTCGCCCTCTTCCCTTTAGGACTGTTGTGCTAAATTTACATTTCATACAGTTGTCATGAATACTGAATTTACTCtaagtttttattaaatgtcattatacTCCACATAACTAAAATTCATAAATCAAA
>TCONS_00049745
TCCCTCCTCGCCCTCTATGAATCTGGGAGAGTCTTAGCCGAGAGGAGCTAATGCCTCTACGGGTGGATTTATTAAGGTTATTGTGCGATTTTTCGGCGGAGTAAGGAAAACACAGCGAGCACACGAAgctttttaatgtattttcacCGGTGAAGTGGAACCAGACGGATTAATTGAGGCCTGTCTTCGACTCTCGGGACAGTTTAGTTTGTCTGTCGATCGTAATGTGGCTCATTGGCTAATCCTTTGGACTTCATTCAATACTAATTCATCCCGAAGCGCTTCGTTTGGACGATCCCAACTGATTTAACAGCTACACACGAGAATGACGGAATACAAGCTGGTCGTTGTCGGTGCGGGTGGTGTTGGGAAAAGTGCACTGACCATCCAGCTCATTCAGAATCACTTCGTAGATGAGTACGATCCCACAATTGAGGATTCATACAGAAAGCAGGTTGTGATTGATGGAGAGACTTGTTTGCTGGATATCCTGGACACTGCAGGTCAGGAGGAGTACAGTGCCATGAGAGACCAGTATATGAGGACAGGAGAGGGATTTCTTTGTGTGTTTGCCATCAACAATGCCAAGTCCTTTGAGGACGTACATCTTTACAGGGAGCAAATAAACCGTGTCAAAGACAGCGATAATGTCCCGATGGTGCTGGTGGGGAACAAAAGTGACCTGACATCTCGTACTGTAGACACACGTCAAGCCCAAGAACTGGCCAGAAGTTACGGGGTCCCATTTGTTGAAACATCGGCCAAGACGCGTCAGGGAGTGGAGGAGGCCTTTTACTCTCTCGTGAGGGAGATCCGAAGATACAAGGAGACCAACCGCAGCAATAAGAAGAGCAAAAAGCACACACAGAGACGTTGCACTCTTTTATAGCGATACACACGTACAGCCTCACACTGCACCCCCTGTGATTAGCAATGCACTCAAGgcctcacatacacacacacacgcacacacattactgtagcatcacacacacacacatttcattttCTTACCGCTCCCTCAGTTTTTACACCCCCATCCTTTGAGCAATAGGAACCtgatgtatgtgtttgtatgtctgtGCACACGAGACCTCGACGAGAACTGTGGAATTGTTCTGTAAAAGACATTTTGGCAACATATTATCAAAAGTTGGCTTGACGAATGCGTCTCAAGTGGACTTGCCACTGCTTTTCAGTTTTGTGCTGACATTGGTCAGGGTTACCGTTGTACTTTAGAACCACAGGAAATGAGAAACTGACCTTTATAACAAATTAACATGGCGGTGAAGGGATGTTCTACAAATCGGTAATGGGTAACTGTTTTTTTAAGTAAGTTTGTTTCATCTCCATGACCCTGTGAGCCAATCTAAACATTTGTGTGGATTTGTTAGCAATGGTTTGGAATGAGGAAGCTAATAGGTGACCTGTGGGAAAGCACATTCAGAACCACTAACAACGTTTCCAACCCATGGATTGTGGGATTTATTTTTCAATACTTGCACAACTTAATGTCACTATAAAAGGGGGCTACTGTAGGTTTCGCCCTCTTCCCTTTAGGACTGTTGTGCTAAATTTACATTTCATACAGTTGTCATGAATACTGAATTTACTCtaagtttttattaaatgtcattatacTCCACATAACTAAAATTCATAAATCAAAgctcactttttatttttaccaacAGTATTCCTTGGTGAAGTCCTCTATTTTTGTAATTGCTAGTACTGGACTGTTTGGGTATTGTATTGGACCGGAACGTTTCACGTATTATAATGAACTGTGTAAAATGCCATTGGTTCCCACCTGTGATGAGGCTCTGTTTGGTGAGGTGGTTTCTctaaatcataggtctcaaactcaattccttgagggctacagctctgcacagttttgatcCAACCccgatcaaacacagctgatctaaaaACAGTCTTGAACACTgttagctgtgtttgatcaggattggagctttggagctaaactgtgcagagctgtagccctccaggaattgagtttgagccCTATGTTCTAAATGTTGTAGATTGACAGAAGAGACTGTAATAGTTTTGGTTCAGGATAAACGATGTGACCAAAACTTGTGATCAATGCATTCCCTTTGCCACATTGATAAATGTAGTTATATGTTTTGTGAATAAATAGACTTTTGGCTAAA
>TCONS_00049746
TCCAGAATGACGGAATACAAGCTGGTCGTTGTCGGTGCGGGTGGTGTTGGGAAAAGTGCACTGACCATCCAGCTCATTCAGAATCACTTCGTAGATGAGTACGATCCCACAATTGAGGATTCATACAGAAAGCAGGTTGTGATTGATGGAGAGACTTGTTTGCTGGATATCCTGGACACTGCAGGTCAGGAGGAGTACAGTGCCATGAGAGACCAGTATATGAGGACAGGAGAGGGATTTCTTTGTGTGTTTGCCATCAACAATGCCAAGTCCTTTGAGGACGTACATCTTTACAGGGAGTGGAGGAGGCCTTTTACTCTCTCGTGAGGGAGATCCGAAGATACAAGGAGACCAACCGCAGCAATAAGAAGAGCAAAAAGCAC
>TCONS_00049747
ATGACGGAATACAAGCTGGTCGTTGTCGGTGCGGGTGGTGTTGGGAAAAGTGCACTGACCATCCAGCTCATTCAGAATCACTTCGTAGATGAGTACGATCCCACAATTGAGGATTCATACAGAAAGCAGGTTGTGATTGATGGAGAGACTTGTTTGCTGGATATCCTGGACACTGCAGGTCAGGAGGAGTACAGTGCCATGAGAGACCAGTATATGAGGACAGGAGAGGGATTTCTTTGTGTGTTTGCCATCAACAATGCCAAGTCCTTTGAGGACGTACATCTTTACAGGGAGCAAATAAACCGTGTCAAAGACAGCGATAATGTCCCGATGGTGCTGGTGGGGAACAAAAGTGACCTGACATCTCGTACTGTAGACACACGTCAAGCCCAAGAACTGGCCAGAAGTTACGGGGTCCCATTTGTTGAAACATCGGCCAAGACGCGTCAGGGAGTGGAGGAGGCCTTTTACTCTCTCGTGAGGGAGATCCGAAGATACAAGGAGACCAACCGCAGCAATAAGAAGAGCAAAAAGCACACACAGAGACGTTGCACTCTTTTATAGC

Function

symbol description
zgc:55558 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Ras protein signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in brain; heart; liver; pleuroperitoneal region; and trunk musculature. Orthologous to human ERAS (ES cell expressed Ras).

GO:

id name namespace
GO:0007265 Ras protein signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-740 Predicted to enable GDP binding activity; GTP binding activity; and GTPase activity. Predicted to be involved in Ras protein signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in brain; heart; liver; pleuroperitoneal region; and trunk musculature. Orthologous to human ERAS (ES cell expressed Ras).

Ensembl:

ensembl_id ENSDARG00000013161

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049743 False 6158 mRNA 0.37 5 16662209 16683623
TCONS_00049744 False 1390 mRNA 0.43 5 16663373 16679457
TCONS_00049745 False 2183 mRNA 0.43 5 16664212 16679971
TCONS_00049746 False 383 processed_transcript 0.48 3 16668603 16678650
TCONS_00049747 True 565 mRNA 0.49 4 16668609 16678678

Neighbor

gene id symbol gene type direction distance location
XLOC_025191 slc17a7a coding upstream 8121 16612574 ~ 16654088 (+)
XLOC_025190 slc6a16a coding upstream 70561 16566361 ~ 16591648 (+)
XLOC_025189 kcnj12b coding upstream 204191 16449490 ~ 16458018 (+)
XLOC_025188 CR388224.1 coding upstream 289082 16373012 ~ 16373127 (+)
XLOC_025187 st8sia6 coding upstream 376950 16265924 ~ 16285259 (+)
XLOC_025193 gys1 coding downstream 38391 16722014 ~ 16750036 (+)
XLOC_025194 tmem86b coding downstream 78860 16762483 ~ 16770318 (+)
XLOC_025195 lrrc3cb coding downstream 88174 16771797 ~ 16774074 (+)
XLOC_025196 stk17al coding downstream 158319 16841942 ~ 16872909 (+)
XLOC_025197 BX470185.1 coding downstream 190778 16874401 ~ 16883304 (+)
XLOC_025429 BX649540.1 misc downstream 13565116 30248739 ~ 30249036 (+)
XLOC_025185 NA non-coding upstream 420869 16186593 ~ 16241340 (+)
XLOC_025184 NA non-coding upstream 500750 16153224 ~ 16161459 (+)
XLOC_025183 CR387933.1 non-coding upstream 606477 16055009 ~ 16055732 (+)
XLOC_025180 NA non-coding upstream 795807 15865921 ~ 15866402 (+)
XLOC_025203 CU207238.1 non-coding downstream 711616 17395239 ~ 17461885 (+)
XLOC_025215 NA non-coding downstream 1356990 18040613 ~ 18061783 (+)
XLOC_025218 NA non-coding downstream 1505986 18189609 ~ 18197126 (+)
XLOC_025227 NA non-coding downstream 1987201 18670824 ~ 18672291 (+)

Expression


Co-expression Network