XLOC_025193 (gys1)


Basic Information

Item Value
gene id XLOC_025193
gene name gys1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16722014 ~ 16750036 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049748
GTAAACGCCTAGTTCTCTGGGGAAGTGCTTGGTGCGATGGTAGACGAGTCTGCTCCTTCATTTACAACAGATCAGGGAGGAGGAGACGGGTCCAATAGGACACGCCCAATTAAATGACGCACTTGGAACTGTCTTGCTGACGGACAGCCAAATTGTCCAATAGACGAGGGGAATCTGCAGCGAGTCCCCGCCCACTGTCAGATCATCCTCCTGGTGATTGATTCCAGCAGATGTGAGGCTTGCGCCGCTGAGCGAGGAAAAGACGCTACCGCAGGCATGCCACTGGCGCGCAGTTTGTCGGTCACCTCCTTGTCTGGCCTAGATGACTGGGATGAAGAGTTTGACCGGGAGGATGCAGTCCTGTTTGAGATTGCATGGGAGGTCGCTAATAAAGTTGGTGGCATTTACACGGTGATCCAGACCAAGGCGCGTCTGACCTGCGAGGAATGGGGCGAGAACTACTTTCTGGTGGGCCCGTACATGGAGTCCAATGTCAGGACGCAAGTGGAGCTGATCGAACCCTGCAATGCGGCACTCAGGAGAACCATTGATAAAATGAACAGCAGCGGCTGCAAGGTTTATTTTGGTCGATGGCTTATTGAAGGCTCACCATATGTGGTTCTGCTGGACGTGGGCTTCACGGCCTGGTCTCTGGACCGCTGGAAAAGTGAATTGTGGGAGAAATGTAATATTGGTGTGCCTTGGTTTGATAGAGAGGCAAACGACGCTGTTCTCTTTGGCTTCCTCACAGCTTGGCTTCTGGGAGAGTATGCAGCTCAGTGTGACGAACCTCCTCATATTGTGGCACATTTTCACGAGTGGCTGGCAGGTTTGGGTCTCGTCTTATGCAGGCAGCGACAACTACCTGTATCAACTATTTTCACCACACACGCCACTCTCCTCGGCCGATACCTGTGTGCTGGAAACGTCGACTTCTACAACAACCTGGCAGAGTTTAATGTGGATAAGGAAGCAGGGGACCGGCAGATCTATCACCGCTACTGTCTGGAGCGAGCAGCTTGCCGATGTGCACACGTCTTCACCACAGTCTCTCAGATCACCGCCATTGAGGCTGAGCACCTGCTAAAGAGAAAACCAGATATTGTGACACCAAATGGCCTAAATGTGAAGAAGTTCTCAGCCATGCATGAGTTCCAGAACCTCCATGCTCAGAGTAAAGCACGCATCCAGGAGTTCGTCAGAGGCCATTTCTATGGGCATTTAGATTTTAACCTTGACAAGACGGTGTTTCTTTTCATTGCTGGACGCTATGAGTTCTCGAATAAAGGAGCGGATATCTTTCTTGAAGCTTTGGCCAGACTTAATTACCTACTGAGGGTGAATCACAGCGAGGTGACCGTCATAGCATTTTTCATTATGCCGGCTCGCACCAACAACTTCAATGTGGAGACCCTGAAGGGCCAAGCCGTACGGAAACAGCTCTGggaCACGGCACAGAGTGTGAAAGAGCGCTTTGGGAAGAAACTCTATGAATCGCTTTTAGTAGGGCAGTTGCCTGATGTGTCCAAGATGTTGGATAAGGAGGACTTTACCATGATGAAGCGTGCCATCTTTGCCACTCAGCGGCAGTGCCAGCCCCCCGTATGCACACACAACATGCTGGAGGATAGCAGCGACCCCATCCTCAACTGCATCCGCCGCATCGGCCTCTTCAACTCAGCTCAGGACAGAGTcaaaGTGATCTTCCATCCAGAGTTTCTCTCCTCAACTTCTCCTCTCTTACCGATGGACTATGAGGAGTTTGTGCGAGGCTGCCACCTTGGAGTATTTCCCTCTTACTATGAGCCCTGGGGATACACACCAGCCGAGTGTACGGTGATGGGCATCCCGTCAATCTCCACTAACCTGTCTGGGTTTGGCTGTTTTATGGAGGAGCACATTGCAGACCCGTCAGCTTATGGTATCTATATTCTGGACCGGCGGTATCGCTCAGTGGACGAGTCCTGTAATCAGCTGACGTCGTTCTTGTTTCAGTTCTGTCAGCAGAGTCGCAGGCAAAGAATCATTCAAAGGAACCGAACCGAGCGCCTCAGTGACCTGCTGGACTGGAGATATCTGGGCCGGTACTACGTTTCTGCCCGTCATTTGGCTTTAGCAAAGGCTTACCCGGACACATACATCTATGAACCTCAAGAACCCTCTTCGGCCGCAGGCTTCCGTTATCCGCGTCCCGCCTCAGTGCCTCCTTCCCCTGCTCACTCGCTTCACTCGTCTCCTCATCACAGCGAGGCCGAGGATGAGGAGGAACCATACGATGAAGATCTGGAGGCTGAGAAAGATCGAGTCAACATCCGCCAGCCATACAACTTACCAAACAGGAATAAGAATCAAACAGTTGGTCTTCCTgagaaaaattaaaacacacacactctgcagcTTATACTGTGaggcacttacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagcagctTATACTGTGaggcacttacacacacacacactccctttaAAGTGAACGTAACGCCTGCAAACAGTATGTCTGCATGTTGGTTTATTGaagagaaataaatatatttaagtatGCGGTGAGCCGTCGTATGTTAAATTGAGGCTTTTTGTGGGAAGATTTCTCCGGTGTCTTTCACATGAGGcctagtaaaaaaaaa
>TCONS_00049749
CATGCCACTGGCGCGCAGTTTGTCGGTCACCTCCTTGTCTGGCCTAGATGACTGGGATGAAGAGTTTGACCGGGAGGATGCAGTCCTGTTTGAGATTGCATGGGAGGTCGCTAATAAAGGATTCAGCAGCGAGTGATTTGTGCATGACCACAGTGTTGATAAAGAGGGTTAAGTTGGTGGCATTTACACGGTGATCCAGACCAAGGCGCGTCTGACCTGCGAGGAATGGGGCG
>TCONS_00049750
CATGCCACTGGCGCGCAGTTTGTCGGTCACCTCCTTGTCTGGCCTAGATGACTGGGATGAAGAGTTTGACCGGGAGGATGCAGTCCTGTTTGAGATTGCATGGGAGGTCGCTAATAAAGTTGGTGGCATTTACACGGTGATCCAGACCAAGGCGCGTCTGACCTGCGAGGAATGGGGCGAGAACTACTTTCTGGTGGGCCCGTACATGGAGTCCAATGTCAGGACGCAAGTGGAGCTGATCGAACCCTGCAATGCGGCACTCAGGAGAACCATTGATAAAATGAACAGCAGCGGCTGCAAGGTTTATTTTGGTCGATGGCTTATTGAAGGCTCACCATATGTGGTTCTGCTGGACGTGGGCTTCACGGCCTGGTCTCTGGACCGCTGGAAAAGTGAATTGTGGGAGAAATGTAATATTGGTGTGCCTTGGTTTGATAGAGAGGCAAACGACGCTGTTCTCTTTGGCTTCCTCACAGCTTGGCTTCTGGGAGAGTATGCAGCTCAGTGTGACGAACCTCCTCATATTGTGGCACATTTTCACGAGTGGCTGGCAGGTTTGGGTCTCGTCTTATGCAGGCAGCGACAACTACCTGTATCAACTATTTTCACCACACACGCCACTCTCCTCGGCCGATACCTGTGTGCTGGAAACGTCGACTTCTACAACAACCTGGCAGAGTTTAATGTGGATAAGGAAGCAGGGGACCGGCAGATCTATCACCGCTACTGTCTGGAGCGAGCAGCTTGCCGATGTGCACACGTCTTCACCACAGTCTCTCAGATCACCGCCATTGAGGCTGAGCACCTGCTAAAGAGAAAACCAGATATTGTGACACCAAATGGCCTAAATGTGAAGAAGTTCTCAGCCATGCATGAGTTCCAGAACCTCCATGCTCAGAGTAAAGCACGCATCCAGGAGTTCGTCAGAGGCCATTTCTATGGGCATTTAGATTTTAACCTTGACAAGACGGTGTTTCTTTTCATTGCTGGACGCTATGAGTTCTCGAATAAAGGAGCGGATATCTTTCTTGAAGCTTTGGCCAGACTTAATTACCTACTGAGGGTGAATCACAGCGAGGTGACCGTCATAGCATTTTTCATTATGCCGGCTCGCACCAACAACTTCAATGTGGAGACCCTGAAGGGCCAAGCCGTACGGAAACAGCTCTGggaCACGGCACAGAGTGTGAAAGAGCGCTTTGGGAAGAAACTCTATGAATCGCTTTTAGTAGGGCAGTTGCCTGATGTGTCCAAGATGTTGGATAAGGAGGACTTTACCATGATGAAGCGTGCCATCTTTGCCACTCAGCGGCAGTGCCAGCCCCCCGTATGCACACACAACATGCTGGAGGATAGCAGCGACCCCATCCTCAACTGCATCCGCCGCATCGGCCTCTTCAACTCAGCTCAGGACAGAGTcaaaGTGATCTTCCATCCAGAGTTTCTCTCCTCAACTTCTCCTCTCTTACCGATGGACTATGAGGAGTTTGTGCGAGGCTGCCACCTTGGAGTATTTCCCTCTTACTATGAGCCCTGGGGATACACACCAGCCGAGTGTACGGTGATGGGCATCCCGTCAATCTCCACTAACCTGTCTGGGTTTGGCTGTTTTATGGAGGAGCACATTGCAGACCCGTCAGCTTATGGTATCTATATTCTGGACCGGCGGTATCGCTCAGTGGACGAGTCCTGTAATCAGCTGACGTCGTTCTTGTTTCAGTTCTGTCAGCAGAGTCGCAGGCAAAGAATCATTCAAAGGAACCGAACCGAGCGCCTCAGTGACCTGCTGGACTGGAGATATCTGGGCCGGTACTACGTTTCTGCCCGTCATTTGGCTTTAGCAAAGGCTTACCCGGACACATACATCTATGAACCTCAAGAACCCTCTTCGGCCGCAGGCTTCCGTTATCCGCGTCCCGCCTCAGTGCCTCCTTCCCCTGCTCACTCGCTTCACTCGTCTCCTCATCACAGCGAGGCCGAGGATGAGGAGGAACCATACGATGAAGATCTGGAGGCTGAGAAAGATCGAGTCAACATCCGCCAGCCATACAACTTACCAAACAGGAATAAGAATCAAACAGTTGGTCTTCCTgagaaaaattaaaacacacacactctgcagcTTATACTGTGaggcacttacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagcagctTATACTGTGaggcacttacacacacacacactccctttaAAGTGAACGTAACGCCTGCAAACAGTATGTCTGCATGTTGGTTTATTGaagagaaataaatatatttaagtatGCGGTGAGCCGTCGTATGTTAAATTGAGGCTTTTTGTGGGAAGATTTCTCCGGTGTCTTTCACATGAGGcctagtaaaaaaaaactaacagagTGCAAAGGATTGAATAGTGACTTGGGTTAAATACGTGACAGTTCATATGGTGCGTGTGCATATTCAAATGGCCACTTTGAAAAGctaagataatacaaataaaggtgTTTTGGCTACTGATATAGGTTTCTTCTCATTACAAACTAATTGAGAAATAAATTATGCAGATATAAATGGTAAAGCGACATTTAATTCcttagaagaaaaacaaatacccTTCAGTAAAAACATGCTTTGTATAATTTCTTTAGGCTTTCTGctcttttatatataaaaataaataaataaatggtgacCAGGTGCTGTTGAGAAAAAGAAACGCACACGAATACATCTCTCTCtccatataaatgtatattagtCCATATATTTCAAGTCTTTAATATCTTTATATGAATAACAAACCCAAATGTAAGACGTCAATTCCTGAAAATCATGTCTATTAGCACTCAGGGTCACCATTCACTTTCACTGTGCTCATGTTTAAAAGCCAAACCTCTTCTTTTGTGTTGCATGAAAAATCAGTGTTTTACAAGACTAGAGACGTGATGTCCTAAAACAATCTCCCAATGCTATACTCACTGCTTTATTTTTCAGTATTATATGTTGTCTCCCCTAAAAAAAACTGACTATCCAGCAATCTTTAGAGGGTTATTATTAAAGAACGAGACAAGCAATCGATGTAGCTAAAGCTAGCCAGCCAAACCAATACACTGGAACATCATCCGTACTGTAAAACAAATCCACACCAGCACTGTTTGAGTTTGTCATGTCTATCACGGCTGTACATCTGAGATTAAAGTGTACAACATTATTGACTTGACacttgttttattaattcattcatccactAACGCTTTCCTCTGTTAACTTGTGCACTTTCTGCAGCAGTCCAATGTTATCAGCACAGATATACTCTCCCTCCGTGACCCTTGCAGACTgcaaaaacagacaaacagatattCAGATGCAGCAAGATGTATAGAAAAGATGATAGGTTTATAATAATGCAAAAGAAAtggctatattcattcattcattttccttcggcttagtccctttattcatcaggggtcgccacagtggaatgaatcgccaactattccggcatatgttttacacagcggatgcccttctagctgcaacccagtactgggaaacacctatacacgctcattcacacacacatttatacactctggctaatttagcttatccaattcacctatagcacatgtttttggactgtgagggaaacaagagaacccggaggaaacccacacgaacgcggggagaacatgcaaaccccaaacagaaatgccaactgacccagctgaggcttgaaccagtgaccttcttgctgtgagacagtgctacccactgcgccaccgtgctgccctatattataatatatatagtggctatataatcattttaaagtcaggtgtttttgttcagcaaacattTTCTTTGAGGGAAAAGCACTCCATCTGTCTTTCTTACACACGCATACCCAGTAAGCTGCTCCAGAATGAATTGTATGTGGCATTTCCTGTTACAGCTCCCAGTTTGGCGGGGTTTTGTCGCACCGTTTTCACTGAGAATCCATCTGGACCAGTAACGTCTACTTCCACAATGTGGTAGTCTGCCAATCTGGAGAGAAAAACGATCAATGCTTCATGTTCCTATTTATGCtttcatagttgaagtcagaattattagcccccctgtttatttttcccccaatttctgtttaatggagagattttttttcaacacatttctatacataatagttttaataactcatttctaataactgatttattttatctttgccatgatgacagtaaataatatttgactagacatttttcaagacacttctatgcagcttgaagagacatttaaaggcttaactaggttaataaggtgaactaggcaggtttgggtaattaggcaagttattatacaaggtataacgatagtttgttctgtagacaaaaaaaaatgttctgtttggaaaaatatagcttaaaggaggtaataattttgacctttaaatgccttttaaaaaactaaaaactgcatttattctagctgaaataaaacaaataaaactttctccagaagaaatatattatcagacatgctgtgaaaatttctgaaatatttaaaaaataaataaataaaattcaaagggagactaattattctgacttcagctgtacatacTTAGGAATTTTAACCCAAACCTGAAgtattacatttttcttttttaccacATGGCAACATGCTAAGTCACTCAAGCCACGTTATCAATGAAGCGATGGTGATATTGTTGGATACCAAGCCATCCTGTGGACAATTTTCAAGCTATCCCGGCTGAATTTAATTACTTAGGAGATTTATTCTTGGCAGCTAGACAGGCTTGCAACCAGGCTAAATTTAATCTGAGTAAATTTATCTTTTAGTTTCACTGTCAGCGCTACTAGTAATTGATGTGTTTTAGTCACCACATGCTCTTGATTGTTTAAATCAGGTTcaaaaactaatttcaagaggagcatgtgatatgattgatcagaCCATTAATAGaccaaggatattttcacagtatttcctccaGTATTCTTTCTGCATCAGAAAGTCTTTTTTCTTTTAGCTTGATTGGAATAaagtagtatttttttaaaaactatttataaggTATAAGGTATGTCTCCATCACTATACTGGGATACTAGGACCCACTCAGACCACAGAGCGTTTCTGGTGTTTTCTGGAGGACTAGCTTTAAAGCACTTACGCAGTGTCTGAAACGATTTCTCCAGTAACCCCGTGGAAGCCCAGTTTTGATGCTGCTATGGCTGCTgctgccattgtgttcacattgtTTGGGGCAATTGGGCAGAGCTCTGCTACTGAGCCGCGATACAAGACCCGCCTCCCCTCTCCCTCTGTCCAATCAGAGAGTAGACCGCCAGTCAGCCGGAAACAAGAGGGGTGTTTAGACATTCGGATGGAGAGAGCCTAGGGGAAAGATGTTTGACATTCACTTGtgccagacatttaaaatgatacactAAACAGTTCCACAAATTTCCTTCAtattgtccaaacacaaatagattaagttttGGTTTTAGATCAACTTTTAATCTAAGcagattgaacatgaaacaagtGTGTTATCCCAcacaaaaactcaagaattgtgttgtttcctctcctttaaacagagtagtttgaacaagcagcagaaatcATTTTTGTTGAGTGTAGTTCTATTTTctatctaaaatagaaatgtactccgtatttactctccctcaagtgcttgcaaacctttatgagtttattttttatgttgaacacaaaagaagatgttttgaagaatgttagaaaacggtagccactgacatccataaaaggaaaaacaaacactggaaatcgttcgaggttacagaagtaacccttcgttccccgaggaggggaacggaagtgccatgaatgaatgggaggattcgg

Function

symbol description
gys1 Predicted to enable glycogen (starch) synthase activity. Predicted to be involved in glycogen biosynthetic process. Predicted to be active in cytoplasm. Is expressed in heart; male organism; and muscle. Human ortholog(s) of this gene implicated in cardiovascular system disease. Orthologous to human GYS1 (glycogen synthase 1).

GO:

id name namespace
GO:0005978 glycogen biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0004373 glycogen (starch) synthase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1243 Predicted to enable glycogen (starch) synthase activity. Predicted to be involved in glycogen biosynthetic process. Predicted to be active in cytoplasm. Is expressed in heart; male organism; and muscle. Human ortholog(s) of this gene implicated in cardiovascular system disease. Orthologous to human GYS1 (glycogen synthase 1).

Ensembl:

ensembl_id ENSDARG00000016875

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049748 False 2677 mRNA 0.51 16 16722014 16746496
TCONS_00049749 False 233 processed_transcript 0.53 3 16724614 16729015
TCONS_00049750 True 5942 mRNA 0.42 15 16724614 16750036

Neighbor

gene id symbol gene type direction distance location
XLOC_025192 zgc:55558 coding upstream 38391 16662209 ~ 16683623 (+)
XLOC_025191 slc17a7a coding upstream 67926 16612574 ~ 16654088 (+)
XLOC_025190 slc6a16a coding upstream 130366 16566361 ~ 16591648 (+)
XLOC_025189 kcnj12b coding upstream 263996 16449490 ~ 16458018 (+)
XLOC_025188 CR388224.1 coding upstream 348887 16373012 ~ 16373127 (+)
XLOC_025194 tmem86b coding downstream 12447 16762483 ~ 16770318 (+)
XLOC_025195 lrrc3cb coding downstream 21761 16771797 ~ 16774074 (+)
XLOC_025196 stk17al coding downstream 91906 16841942 ~ 16872909 (+)
XLOC_025197 BX470185.1 coding downstream 124365 16874401 ~ 16883304 (+)
XLOC_025198 atp6v0a1a coding downstream 172190 16922226 ~ 16973125 (+)
XLOC_025429 BX649540.1 misc downstream 13498703 30248739 ~ 30249036 (+)
XLOC_025185 NA non-coding upstream 480674 16186593 ~ 16241340 (+)
XLOC_025184 NA non-coding upstream 560555 16153224 ~ 16161459 (+)
XLOC_025183 CR387933.1 non-coding upstream 666282 16055009 ~ 16055732 (+)
XLOC_025180 NA non-coding upstream 855612 15865921 ~ 15866402 (+)
XLOC_025203 CU207238.1 non-coding downstream 645203 17395239 ~ 17461885 (+)
XLOC_025215 NA non-coding downstream 1290577 18040613 ~ 18061783 (+)
XLOC_025218 NA non-coding downstream 1439573 18189609 ~ 18197126 (+)
XLOC_025227 NA non-coding downstream 1920788 18670824 ~ 18672291 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_05853721_05866514 GYS1 coding CI01000034 null 5853721 ~ 5866514 (-)