XLOC_025198 (atp6v0a1a)


Basic Information

Item Value
gene id XLOC_025198
gene name atp6v0a1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16922226 ~ 16973125 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049756
GCTCTGCCTAGTTCTGGTCAGCTGATGCCCGCGACGCAGAGGATTCAGACACCGCAGGACTCCGTTTTAACCCGTTTAAACTCAGTGCTTCTCCCCTTAGTGCATTGGGTTAAGAGCAGTGCATTATGGGGGAGCTGTTTCGTAGCGAGGAGATGACCCTGGCCCAGCTCTTTCTCCAGTCAGAGTCTGCATACTGCTGTGTCAGTGAGCTGGGGGAGATCGGCATGGTGCAGTTCAGAGATTTGAACCCAGATGTCAACGCATTCCAGAGGAAGTTTGTGAATGAGGTCCGTCGCTGTGAGGAGATGGACCGTAAACTGAgaTTTGTTGAGAAGGAAATCAAAAAGGCGAACATACCTATTGTAGATACAGGGGAGAATCCAGAGGTCCCCTTTCCACGAGACATGATTGACTTGGAGGCCACCTTTGAAAAACTGGAGAACGAGCTGAAGGAGATCAACACCAACCAGGAAGCCCTGAAGAAGAATTTTCTCGAGTTGACTGAGCTCAAGCACATCCTCCGACGAACGCAGCAGTTCTTTGATGAGATGGAAGATCCTTCACTTTTGGAAGAGTCATCAACTCTACTGGACCCGAATGAAGTTGGACGGGCCGCTCCTCTCAGGCTTGGGTTTGTTGCGGGGGTGATAGGCAGAGAAAGGATCCCCACTTTTGAGAGGATGCTGTGGAGAGTTTGCCGTGGAAATGTGTTCCTGCGCCAAGCAGATATTGAAGACCCACTCGAAGACCCCGCTACCGGAGACAATGTGCACAAGTCAGTGTTCATCATTTTCTTCCAGGGAGACCAGCTGAAGAACAGAGTCAAGAAGATTTGTGAAGGGTTTCGGGCATCTCTATACCCCTGTCCCGAGACCCCTCAAGAGAGGAAAGAAATGGCAGCCGGAGTTAACACTCGTATTGATGATCTTCAGATGGTGCTGAACCAGACAGAGGATCACAGGCAGCGTGTTTTGCAGGCAGCTGCCAAAACTGTCCGAGTGTGGTTCATCAAGGTCCGCAAGATGAAAGCCATTTATCACACACTCAACCTCTGCAACATTGATGTCACCCAGAAGTGTCTGATCGCTGAGATCTGGTGCCCTGTGTCCGATCTAGACTCCATTCAGTTTGCACTCCGTCGTGGCACGGAGAGAAGTGGATCCACCGTTCCCTCCATCCTGAACAGAATGCAGACCAAACAGACGCCCCCCACCTACAACAAAACCAACAAGTTCACCTCTGGCTTTCAGAGTATCGTTGATGCATACGGCATCAGCAACTACCGGGAGATGAACCCAGCTCCATACACCATCATCACCTTCCCCTTCCTGTTTGCGGTCATGTTTGGTGATCTGGGTCACGGCGTGCTCATGACCTGTGCTGCACTTTATCTGGTACTGCGAGAGAGCCGATTAATTGCCCAGAAAAATGACAGCGAGATGTTTAGCATGGTGTTCGCAGGCCGATACATTATCCTCCTGATGGGACTGTTTTCGATGTATACTGGCATTATCTACAATGACTGCTTCTCCAAGTCTCTCAATATCTTCGGCTCGGGATGGAGTGTCAGACCAATGTTTGGTGAAAAAGGAGACAACTGGACATTTGCAGTTCTGGAGAAAAGCAATGTGTTACAGCTGAACCCTGCTGTTCCTAATGTGTTTACTGGACCGTATCCTGTCGGCATTGACCCAATCTGGAACATTGCCACCAACAAGCTGACGTTTCTGAACTCCTTCAAGATGAAGATGTCAATAATTCTGGGAGTTATACACATGATATTTGGAGTTTCCCTCAGTCTTTTCAATCACCTGTACTTTCGTAAACCTCTGAACATCTACCTGGGATTTATTCCGGAGATCATCTTCATGGTCAGCCTGTTTGGCTACCTGGTGCTGCTCATTTTTTACAAGTGGATAGCGTATGATGCTAAAAGCTCAAGAGTAGCCCCGAGTCTTCTTATAACCTTCATCAACATGTGCCTCTTCAGCTACAATGATCCCACCAACAAACCGTTTTATACGGGACAGGTGGTGATTCAGTGTCTGCTAGTTATTATAGCTCTCTCCTGTGTACCCTGTATGCTCATTGTAAAGACCCTAGTCATGCGCAGACAACACCTATGGAGAAGACACCTGggaacgcaaaactttgggGGAATCCATGTGGGTAACGGCCCAACAGAGGACGAAGCTGAGATAATCCAGCATGACCAGCTTTCCCAAAACACAGAAGAGGAGCCTGAGTTTAATTTTGCAGATGAAGCAGTGCATCAAGCCATTCACACTATAGAATACTGCTTGGGCTGCATCTCAAACACTGCGTCTTATCTACGGCTCTGGGCGCTGAGTCTGGCTCATGCCCAGCTCTCTGAGGTGCTGTGGTCAATGGTGATGCACATGGGTCTCTCTTCCAGGAGTTTTGGAGGATTCATTTTCCTGTCCATTATCTTTTGCTTTTTTGCTGTACTGACAGTGTTTATTCTGTTGGTCATGGAAGGTCTCTCTGCCTTTCTTCATGCTCTTAAATTGCACTGGGTGGAGTTCCAGAATAAATTCTACACTGGACAGGGCTTCAAGTTCATGCCTTTTACATTTGACAGCATTCTGGATGGCAAGTCTGAAGAATAAACCTCACccactctctatctctctctctctctctctctcccttcctTTGCAAACCTCCAaactacaggagccaatcagtttAGAGTGAGCTTTTATGATTATGTGAGCACTGTGACATGCATGGCTCTAAATTTCTCAGGTGTTCTACTTCAGGACATAAATGGAATAACTTACATGCAAGTAAATTACATGCAACTCGTAAAAAGAATCTGAGCATAACACATGGAATAACTCTTGCCTCgatatattgatataatataatacaaactcaaTAGTATGAACGTCATGCTTTTTTTCCTTCATAAAAGCCTATGAATTTGTATATACTCTTCAATagaagcaaatatctttacagttTCCTTCTCATAATAGTGGAGATTTTGTCTTTTTGTCCAGTTTCCTAAATTATTAgagtttgttttttatgtatctTTTATTCTTTATGTTGAACATAACTAAATTAATAGTTCTCATGCAAAGGGACCTCATTTCAAAcgtcacaacaacaacaaaaacatcactTTATGCCATTTTACAAACCTTTGTCATGCATATCTGAATCATAGATGCAGTTAATCCAGATTTATTGCAGATCTTTTCATTCCTTCGCAGTCATGGTTGTAAAATGTAGTCCTGATTTAGTTGGtctctgtgttttgttttgtttttgttttctctgGACAATTAAAAGCAAATGTACATCTGATCTTACGAATCTGTTTGCTGCAGTGCCCAGTTCTGGGGTTTTTTGACTGTTGTTTATTCATGCAACATACACATGCATTGGCTATTAAAGAAATTATGTCAGATGTCAAAAGCAGTTCTTCAGTGTAGCAGAAATGAACTATACCAAGTAAACGCAGTCAGTGACGTGGAGTGATTATGTCTGTTGTGTGTGTCAATAAAGAGGAAGGAGGGGATCTAAA

Function

symbol description
atp6v0a1a Predicted to enable ATPase binding activity. Acts upstream of or within autophagosome maturation; neural crest cell migration; and phagolysosome assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be active in plasma membrane. Orthologous to human ATP6V0A1 (ATPase H+ transporting V0 subunit a1).

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0001755 neural crest cell migration biological_process
GO:0097352 autophagosome maturation biological_process
GO:0007035 vacuolar acidification biological_process
GO:0001845 phagolysosome assembly biological_process
GO:0006811 ion transport biological_process
GO:0016471 vacuolar proton-transporting V-type ATPase complex cellular_component
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0005886 plasma membrane cellular_component
GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0051117 ATPase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3027 Predicted to enable ATPase binding activity. Acts upstream of or within autophagosome maturation; neural crest cell migration; and phagolysosome assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be active in plasma membrane. Orthologous to human ATP6V0A1 (ATPase H+ transporting V0 subunit a1).

Ensembl:

ensembl_id ENSDARG00000020847

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049756 True 3556 mRNA 0.45 21 16922226 16973125

Neighbor

gene id symbol gene type direction distance location
XLOC_025197 BX470185.1 coding upstream 38922 16874401 ~ 16883304 (+)
XLOC_025196 stk17al coding upstream 49317 16841942 ~ 16872909 (+)
XLOC_025195 lrrc3cb coding upstream 148152 16771797 ~ 16774074 (+)
XLOC_025194 tmem86b coding upstream 151908 16762483 ~ 16770318 (+)
XLOC_025193 gys1 coding upstream 172190 16722014 ~ 16750036 (+)
XLOC_025199 cavin1a coding downstream 2970 16976095 ~ 17012340 (+)
XLOC_025200 stat3 coding downstream 57540 17030665 ~ 17107445 (+)
XLOC_025201 stat5a coding downstream 278417 17251542 ~ 17331919 (+)
XLOC_025202 si:ch211-210g13.5 coding downstream 373377 17346502 ~ 17523082 (+)
XLOC_025203 CU207238.1 coding downstream 422114 17395239 ~ 17461885 (+)
XLOC_025429 BX649540.1 misc downstream 13275614 30248739 ~ 30249036 (+)
XLOC_025188 CR388224.1 non-coding upstream 549099 16373012 ~ 16373127 (+)
XLOC_025185 NA non-coding upstream 680886 16186593 ~ 16241340 (+)
XLOC_025184 NA non-coding upstream 760767 16153224 ~ 16161459 (+)
XLOC_025183 CR387933.1 non-coding upstream 866494 16055009 ~ 16055732 (+)
XLOC_025215 NA non-coding downstream 1067488 18040613 ~ 18061783 (+)
XLOC_025218 NA non-coding downstream 1216484 18189609 ~ 18197126 (+)
XLOC_025227 NA non-coding downstream 1697699 18670824 ~ 18672291 (+)
XLOC_025229 AL772362.2 non-coding downstream 1798403 18771528 ~ 18788485 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_05744195_05777951 ATP6V0A1, ATP6V0A1A coding CI01000034 null 5744024 ~ 5777951 (-)