CI01000034_05744195_05777951 (ATP6V0A1, ATP6V0A1A)


Basic Information

Item Value
gene id CI01000034_05744195_05777951
gene name ATP6V0A1, ATP6V0A1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5744024 ~ 5777951 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_05744195_05777951.mRNA
CCTCGATCACGTGACCAGGTCTGGGCTGTTCATGACGTCATGTTCGCTCTGCCTCGTTCTGGTCAGCTGATGCTTACGACGCAGAGGATTCAGAGACTGCAGCACTCCAATTTCAACCGTTTAAACTCAGTGTTCACATTATTAATATGCGGTCTCAATGTAGGATCTGTTTTTGAAAGACTGCTTTGGTCCACTGCACTGATACCTGATGATGCTGGTACAGCTGTATGTCGTTGTACAGGAGAGTGGAAAAAAGAGAAGGATACACAGAGACAGCTGAAAGAGTATCTGCATCTTGATAATTCCCCAAAACATTCTCCCCTTAGTGCATTGAGTAGAGAGCAGTGCATTATGGGGGAGTTGTTCCGCAGTGAGGAGATGACCCTGGCCCAGCTCTTCCTTCAGTCTGAGTCTGCCTACTGCTGTGTCAGTGAGCTGGGGGAGATCGGCATGGTGCAGTTCAGAGACACAAGCTCAGTGTCTACAAGACAATGCTACCCATCTGCATTAGTGACACATATGTTGAACCCAGATGTGAACGTTTTCCAGAGGAAGTTTGTGAACGAAGTTCGTCGCTGTGAGGAGATGGACCGCAAACTAAGATTTGTTGAGAAGGAAATCAAAAAGGCGAACATACCTGTTGTAGACACAGGGGAGAACCCAGAGGTCCCTTTTCCACGAGACATGATTGACTTGGAGGCCACTTTTGAAAAGCTGGAGAATGAGCTGAAGGAGATCAACACCAACCAAGAAGCCCTGAAGAAGAACTTCCTGGAGCTAACTGAGCTCAAGCACATCCTCAGACGAACACAGCAGTTCTTTGATGAGATGGAAGATCCTTCACTTTTGGAAGAGTCGTCAACTCTACTGGAGCCGAACGAGGTTGGACGCCCCCCTCCTCTGAGGCTTGGGTTTGTTGCAGGGGTGATAGGCAGAGAGAGGATTCCCACCTTCGAGAGGATGCTGTGGAGAGTTTGCCGTGGAAACGTCTTTCTGCGGCAGGCAGACATTGAGGAGCCACTTGAGGACCCCGCCACAGGAGACCATGTGCATAAGTCAGTTTTCATCATTTTCTTCCAGGGAGACCAGCTGAAGAACAGAGTCAAAAAGATTTGCGAAGGGTATGAGAGCATCACTGCCAATAAGTCACAATACAGAGTGACTGAAATGTATGAATCGTTAATGTCCCTGTGCTCTTCTCTCAGCTTTAGAGAGAATTGGGTGCTGAATCAGACAGAGGATCACAGGCAGCGTGTTTTACAGGCGGCTGCCAAAACTGTCCGAGTGTGGTTCATCAAGGTCCGGAAGATGAAAGCCATTTATCACACTCTGAACCTCTGCAACATCGATGTCACTCAGAAGTGTCTGATTGCTGAGATCTGGTGCCCTGTGTCAGATCTAGACTCCATTCAGTTTGCGCTCCGTCGGGGCACGGAGAAAAGTGGATCCACTGTTCCCTCCATCCTGAACAGAATGCAGACCAAACAGACCCCACCCACCTACAACAAAACCAACAAGTTCACCTCTGGCTTTCAGAACATCGTTGATGCCTACGGTATCGGCAACTACCGGGAGATCAACCCAGCTCCATACACCATCATCACCTTCCCCTTCCTGTTTGCGGTCATGTTTGGCGACCTGGGTCACGGTGTACTCATGACATGCGCTGCACTTTATCTGGTACTGCGAGAGAGCCGATTAATTGCCCAGAAAAATGACAATGAGATGTTTAGCATGATATTTGCTGGCCGTTACATTATTCTCCTGATGGGACTATTTTCAGTGTACACTGGGATTATCTACAACGACTGTTTCTCCAAATCTCTCAATGTCTTTGGCTCAGGATGGAGTGTCAGACCCATGTTTGAACCAAAAGGAGACAACTGGACGTTTGAGACACTGAAGGAAAACCGGCTATTACAGCTGAACCCTGCTGTGCCAAAGGTGTTTAATGGGCCCTATCCAATTGGCATTGATCCAATCTGGAACATTGCAACCAACAAGCTGACGTTTCTGAACTCCTTCAAGATGAAGATGTCAATAATTCTGGGAGTCATCCACATGACGTTTGGAGTGATTCTCAGTCTTTTTAATCACCTGTACTTCAACAAACCTCTTAACATCTTCCTGGGTTTTATCCCTGAGATCGTCTTCATGATCAGTCTGTTTGGCTACCTGACTCTGCTCATTTTTTACAAGTGGTTGGCCTATGATGCCACAACCTCAAAAGATGCCCCCAGTCTTCTAATAGCTTTTATCAACATGTGCCTCTTCAGCTACAACGATCCCACTAACAAACCATTATACAAGGGACAGGGAACGCAAAACTTTGGGGGAATCCGTGTGGGTAATGGCCCCACAGAGGATGAAGCTGAGATCATCCAACATGACCAGCTTTCCCAAAACTTAGAAGATGAGCCTGAGTTTAATTTTGCAGATGAAGCAGTGCATCAGGCCATTCACACAATAGAATACTGCTTAGGCTGCATCTCAAACACTGCCTCTTATCTACGACTTTGGGCGTTGAGTCTCGCCCATGCCCAGCTCTCTGAGGTCTTGTGGTCAATGGTGATGCACATGGGCCTTGCTTCTAGAAATTTTGGTGGATTCTTTGCCCTGTCAATTATCTTTGCCTTCTTCGCTACACTGACAGTATTTATTCTGTTGATCATGGAAGGACTGTCTGCCTTCCTTCATGCTCTTAGATTGCACTGGGTGGAGTTTCAGAATAAATTCTATACTGGACAAGGCTTCAAGTTCATGCCTTTCACTTTTGACAGCATTCTGGAGGGCAAGTCTGAAGACTAAACCGCACCCACATTCTCTCCTTTCCCAACTGCCACACCTCTAAACTACAGGAGCCAATCAGATTACGTGTGAGATTTTATGATTTGTGTGAACACTGTGACTTTGTAAGGCTCTAAATTTCTCAGGTGTTCTACATCAGGACATTAATGGAATAATTTTCAAGAAAGTAAA

Function

symbol description
atp6v0a1a Predicted to enable ATPase binding activity. Acts upstream of or within autophagosome maturation; neural crest cell migration; and phagolysosome assembly. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of vacuolar proton-transporting V-type ATPase complex. Predicted to be active in plasma membrane. Orthologous to human ATP6V0A1 (ATPase H+ transporting V0 subunit a1).
atp6v0a1 Enables ATPase binding activity. Involved in regulation of macroautophagy. Located in several cellular components, including Golgi apparatus; cytosol; and nuclear speck.

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K02154 ATPeV0A, ATP6N; V-type H+-transporting ATPase subunit a

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_05744195_05777951.mRNA True 2979 mRNA 0.47 22 5744024 5777951

Neighbor

gene id symbol gene type direction distance location
CI01000034_05721684_05742044 NA coding downstream 1980 5721563 ~ 5742044 (-)
CI01000034_05681798_05699059 RBTSTAT3, STAT3 coding downstream 44904 5681493 ~ 5699120 (-)
CI01000034_05601190_05607136 STAT5B, STAT5A, STAT5, STA5B coding downstream 136855 5601132 ~ 5607169 (-)
CI01000034_05509621_05566772 NA coding downstream 177252 5509621 ~ 5566772 (-)
CI01000034_05491347_05493196 NA coding downstream 250769 5491055 ~ 5493255 (-)
CI01000034_05795972_05811363 NA coding upstream 17884 5795835 ~ 5811781 (-)
CI01000034_05833575_05834462 NA coding upstream 55452 5833403 ~ 5835139 (-)
CI01000034_05843208_05844043 LRRC3CB coding upstream 65228 5843179 ~ 5844043 (-)
CI01000034_05846112_05848878 TMEM86B coding upstream 67150 5845101 ~ 5848878 (-)
CI01000034_05853721_05866514 GYS1 coding upstream 75770 5853721 ~ 5866514 (-)
G172776 NA non-coding downstream 166250 5577443 ~ 5577774 (-)
G172692 NA non-coding downstream 186049 5539885 ~ 5557975 (-)
G172696 NA non-coding downstream 208154 5528899 ~ 5535870 (-)
G172771 NA non-coding downstream 231228 5512528 ~ 5512796 (-)
G172680 NA non-coding downstream 527022 5211951 ~ 5217002 (-)
G172800 NA non-coding upstream 11305 5789032 ~ 5789738 (-)
G172845 NA non-coding upstream 98780 5876731 ~ 5882670 (-)
G172593 NA other downstream 749081 4992960 ~ 4994943 (-)
CI01000034_04216451_04218876 NA other downstream 1526282 4216212 ~ 4221881 (-)
CI01000034_04165535_04172272 KCTD13 other downstream 1571854 4165373 ~ 4172272 (-)
G172151 NA other downstream 2346211 3391144 ~ 3451802 (-)
G172016 NA other downstream 2507409 3234963 ~ 3236615 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025198 atp6v0a1a coding NC_007114.7 CM002887.2 16922226 ~ 16973125 (+)