CI01000034_05681798_05699059 (RBTSTAT3, STAT3)


Basic Information

Item Value
gene id CI01000034_05681798_05699059
gene name RBTSTAT3, STAT3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5681493 ~ 5699120 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_05681798_05699059.mRNA
ATACTCTTCTAGTTTCACCTGTGCATAGTTCACTTCCTCATTGCACACACAGCAGGTAGATATGGCGAGTGAAGTTGCAGTGCGTTTTGTGGATAACAATGTCAACATGGCCCAGTGGAATCAGTTACAGCAGTTAGAGACACGGTATCTGGAGCAGCTGTATCACTTGTACAGTGACAGTTTCCCCATGGAGCTGCGGCAGTTCCTGGCCCCATGGATCGAGAGCCAGGACTGGGCGTATGCAGCCAACAAGGAATCTCACGCAACGCTCGTGTTCCATAACCTGCTGGGTGAGATTGATCAGCAGTACAGCCGCTTCCTGCAGGAGAACAACGTCCTGTACCAACACAACCTGCGGCGCATCAAACAGCACCTGCAGAGCAAGTATCTGGAGAAGCCCATGGAGATCGCTCGCATTGTGGCCCGCTGCCTGTGGGAAGAGCAGCGTCTGCTTCAGACGGCCACCACTGTGCAGCAGGATGGCCAGGTTGCCCATCCCACGGGTACTGTGGTGACAGAAAAACAGCAGATACTGGAACACAACCTGCAGGACATCAGGAAGAGAGTACAGGACATGGAGCAGAAGATGAAGATGTTGGAAAATCTGCAAGATGACTTTGACTTCAACTACAAAACTCTTAAGAGTGCTGGAGAGTTGTCCCAGGACCTGAATGGAAACAGCCAGGCAGCAGCCACCAGGCAGAAGATGTCTCAGCTGGAGCAGATGCTGAGCGCTCTGGATCAGCTGAGGAGGCAAATAGTGACTGAGATGGCAGGGCTGCTGTCTGCCATGGACTTTGTGCAGAAGAATCTGACAGATGAAGAACTGGCCGACTGGAAGAGGAGACAGCAGATCGCTTGCATCGGAGGACCACCGAACATCTGCCTGGACCGCTTAGAGACATGGATCACCTCTTTGGCTGAGTCACAGTTGCAGATAAGACAGCAGATCAAGAAACTGGAGGAGCTTCAACAAAAAGTCTCGTACAAAGGAGATCCAATTATTCAGCACCGCCCTGCTCTGGAGGAGAAAATCGTAGACCTGTTCCGCAACCTTATGAAGAGTGCATTTGTTGTCGAGAGGCAGCCTTGTATGCCCATGCATCCTGACCGACCCCTTGTCATCAAAACAGGAGTTCAGTTCACCACCAAAGTCAGGTTGCTTGTGAAATTCCCAGAGTTGAATTACCAGCTGAAAATCAAAGTTTGTATTGACAAAGAGTCAGGTGACGTGGCAGCCATTAGAGGTTCACGCAAGTTCAACATCCTTGGCACCAATACTAAGGTGATGAACATGGAGGAATCCAACAATGGCAGCCTGTCAGCAGAGTTCAAACATCTGACCCTACGAGAGCAGAGATGTGGCAACGGAGGCCGAACCAACAGTGACGCGTCTCTGATAGTGACTGAAGAACTTCACCTGATCACATTCGAGACAGAGGTCTACCATCAAGGACTAAAGATCGACCTCGAGACACACTCTCTCCCAGTAGTGGTCATCTCTAATATCTGTCAAATGCCAAATGCATGGGCGTCCATCCTGTGGTACAACATGCTGACCAACCATCCAAAGAATGTGAACTTCTTCACCAAACCTCCAGTGGGAACGTGGGATCAGGTGGCTGAAGTGCTCAGCTGGCAATTTTCATCCACAACCAAAAGAGGACTTACCATTGAGCAGCTCACCACACTTGCAGAGAAACTTTTGGGTCCGTGTGTAAACTACTCCGGTTGCCAAATCACATGGGCCAAGTTCTGCAAAGAGAACATGGCAGGAAAAGGTTTCTCATTCTGGGTGTGGCTAGACAACATTATTGACCTAGTGAAGAAATACATTTTGGCTCTATGGAATGAAGGGTATATTATGGGCTTCATCAGTAAAGAAAGAGAGAGGGCAATCCTGAGCCCAAAGCCTCCTGGGACATTCCTGCTGCGCTTCAGTGAAAGCAGCAAAGAGGGAGGAATTACCTTCACCTGGGTTGAGAAGGACATCAATGGTAAGACCCAGATCCAGTCAGTTGAACCGTACACTAAGCAGCAGCTCAACAGCATGTCTTTCGCTGAGATCATTATGGGCTACAAGATCATGGATGCCACCAACATCCTCGTGTCGCCACTGGTCTACCTCTACCCCGATATTCCCAAAGAGGAGGCGTTTGGCAAGTACTGCCGCCCCGAGGCCCAGCCCGACACTGAATTCCCTGACCCTGGATGTGTAATTCAGCCCTACCTGAAGACCAAGTTCATCTGTGTCACCCCGTGTCCTTCTGTCTTCATGGACTTCCCGGACAGTGAGCTGCTTGGGAACGGCTTCCCTGGGACTAACTCCGGCAACACGAGTGATTTGTTCCCAATGTCCCCTCGTACACTCGACTCTCTCATGCACAATGAAGCCGCGGAGGCCAATCCGGGACCTCTCGAATCCCTCACTCTGGACATGGAGTTGAGCTCCGATCATCCCTCACCCATGAGAGAAGGGTTTGCAGCCACAACAGTCTCAGATATGGACACCTGCCGAAATGCTTAGTTTTCCAACATGTTCGTTTTTTTAGTTATTTACATAGGGAAAAGTAATTGTCATGTACATAATGTGCTTAGGTGCTAGAGCCTTTTCTCTCTCCGAGCCAATTCTTTTTTTTTTTTTTTTTTTCAGTTTAGCTTTTCATCCTCATATCAACATTGATAATACTGAATTGAACTTTTTCTTTTTTAAATGGTTAAGATGCAAGCTTTTTTCACTTTTATTACAAAAGCATGAGGTATTCAAGATCATTAACACAGGAGTTTTTAGCTTTCTTGACCAGAAGTGTGAATATAAAGGTTGTTATTAAA

Function

symbol description
stat3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including animal organ development; cardiac muscle tissue regeneration; and generation of neurons. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including blastomere; epidermal superficial stratum; head; immature eye; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); carcinoma (multiple); hyper IgE recurrent infection syndrome 1; reproductive organ cancer (multiple); and type 2 diabetes mellitus. Orthologous to human STAT3 (signal transducer and activator of transcription 3).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K04692 STAT3; signal transducer and activator of transcription 3

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_05681798_05699059.mRNA True 2832 mRNA 0.48 24 5681493 5699120

Neighbor

gene id symbol gene type direction distance location
CI01000034_05601190_05607136 STAT5B, STAT5A, STAT5, STA5B coding downstream 74324 5601132 ~ 5607169 (-)
CI01000034_05509621_05566772 NA coding downstream 114721 5509621 ~ 5566772 (-)
CI01000034_05491347_05493196 NA coding downstream 188238 5491055 ~ 5493255 (-)
CI01000034_05467255_05480455 KCNH4, KCNH4A coding downstream 201038 5467255 ~ 5480455 (-)
CI01000034_05462429_05465076 NA coding downstream 216417 5462380 ~ 5465076 (-)
CI01000034_05721684_05742044 NA coding upstream 22443 5721563 ~ 5742044 (-)
CI01000034_05744195_05777951 ATP6V0A1, ATP6V0A1A coding upstream 44904 5744024 ~ 5777951 (-)
CI01000034_05795972_05811363 NA coding upstream 96715 5795835 ~ 5811781 (-)
CI01000034_05833575_05834462 NA coding upstream 134283 5833403 ~ 5835139 (-)
CI01000034_05843208_05844043 LRRC3CB coding upstream 144059 5843179 ~ 5844043 (-)
G172776 NA non-coding downstream 103719 5577443 ~ 5577774 (-)
G172692 NA non-coding downstream 123518 5539885 ~ 5557975 (-)
G172696 NA non-coding downstream 145623 5528899 ~ 5535870 (-)
G172771 NA non-coding downstream 168697 5512528 ~ 5512796 (-)
G172680 NA non-coding downstream 464491 5211951 ~ 5217002 (-)
G172782 NA non-coding upstream 27261 5726381 ~ 5765635 (-)
G172800 NA non-coding upstream 90136 5789032 ~ 5789738 (-)
G172845 NA non-coding upstream 177611 5876731 ~ 5882670 (-)
G172593 NA other downstream 686550 4992960 ~ 4994943 (-)
CI01000034_04216451_04218876 NA other downstream 1463751 4216212 ~ 4221881 (-)
CI01000034_04165535_04172272 KCTD13 other downstream 1509323 4165373 ~ 4172272 (-)
G172151 NA other downstream 2283680 3391144 ~ 3451802 (-)
G172016 NA other downstream 2444878 3234963 ~ 3236615 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016912 stat3,LOC107653351 coding CM030122.1 CM030122.1 34310868 ~ 34340346 (+)