CI01000034_05467255_05480455 (KCNH4, KCNH4A)


Basic Information

Item Value
gene id CI01000034_05467255_05480455
gene name KCNH4, KCNH4A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5467255 ~ 5480455 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_05467255_05480455.mRNA
AAAGCTCAATGGCTTCATACTCTCGTACTCCCGTTCATTTATGTGTTCATTAAGTCAGTGGCGCAGATGCAGCACTCGCACTACACTTGTTCTGTGTACTGAGATTGATGACAGTAACTTCCTGCTGGGAAATGCTCAGGGGAGTCGCGGGTACCCCATTGTGTACTGTTCGGACGGGTTCTGCGAGCTCACCGGGTTTGCACGTACCGAGGTAATGAAGAAGACATGCACATGTCAGTTCCTGCACGGACAGGAAACAAGCGAGAGAGTCACTCAGCAGGTGGAGAAAACCTTGGAAGGACAAAGAGAGTTCCAGACGGAGGTCCGCTATTACAGGAAGAACGGTACCACATTCTGGTGTCTGCTGGACATTGTCCCTATTAAAAATGAGAAAGGAGAAGTGGTTCTGTTTCTCTTATCCTTCAAAAACATCAGTGACTCGTATGGCAAATCACATCCCGGCTCCACCACAGAAGAGGATGGTGCTCACAACAGGAAGTCCGGTCGAACTCATCTGAGTCAGGCTCGTGAGCGCGGCCGCAGCGTTCTGTACCACTTGACCTGTCAGTTCACCAATAGGAGCAAAAGGAAGCTGCCAAATCATGTTTTTTCACAGCCAACTCTCCCGGAATACAAGGTGGCGTCGGTGCAGAAATCCCGCTTCATTTTGCTTCATTACAGCGTGTGCAAAGCATTGTGGGATTGGTTGATCCTTCTTGCGACATTCTATGTAGCTGTCACCGTCCCCTACAACGTCTGCTTCTCCACTCCTGATGACGACGAACATGACGACCCGGACTGTGACTCGGCCTCCAGAACCACCATCGTCAGCGACATAGCTGTGGAGATGCTCTTCATCCTCGATATCATTCTGAATTTTCGAACCACCTATGTTGGGCCTGCGGGTCAGGTGGTTTATGATGCTCGCTCGATCTGTTTGCACTACTGTACTACCTGGTTCTTCCTGGACCTCATCGCTGCTCTGCCTTTTGACCTGCTCTATTTATTCAACATCTCAGTGACTTCCCTTGTGCACTTGTTGAAGACGGTGCGTTTGCTGCGTCTCCTGCGCTTGCTGCAGAAGCTGGATGGTTATTCTCAGTACAGTGCTGTGGTCCTGACACTACTAATGTCTGTATTTGCCCTGCTGGCACACTGGTTGGCATGTGTTTGGTATGTTATTGGACGCAAAGAGCTCGCCAGCAATGATCCCCTGACCTGGGACATCGGTTGGCTGCAGGAGTTGGGTAAGCGTCTGGAGACTCCTTACACGAATGGTACAGTTGGCGGCCCATCTTTGCGCAGCGCCTACATCGCTTCGCTCTACTTCACGTTGAGCAGTCTGACTAGCGTCGGGTTCGGAAACGTCTGTGCCAACACAGACGCTGAGAAGATCTTCTCCATCTGCACCATGCTTATCGGGGCCCTGATGCATGCGGTGGTGTTTGGTAATGTGACAGCCATCATCCAGCGCATGTACTCTCGGCGTTCACTCTACCACACACGCATGAAGGATCTGAAGGACTTTATTCGTGTGCATCGCCTGCCTCAGCAGTTGAAACAGCGCATGCTGGAGTACTTCCAGACCACCTGGTCTGTTAACAATGGTATCAACGCCAACGAGCTTTTACATGACTTCCCAGACGAGCTGCGGGCAGACATCGCCATGCACCTGAACAAAGACATTCTGCAGCTGCCTCTCTTCTCCTCTGCCAGTAGAGGGTGCCTGCGTTCACTATCCTTGCACATTAAGACCTCGTTCTGCGCACCTGGAGAGTATCTGATTCGCCATGGAGACGCCCTGCATGCGCAACACTTCGTCTGCTCTGGGTCTTTAGAGGTCCTCAAGGACGGCATGGTGCTTGCCATACTAGGTAAAGGAGACCTGATTGGTGCTGACCTGCCAGGGAAGGATCAGGTGATCAAAGCTAACGCAGATGTAAAGGCTCTGACCTACTGTGACCTGCAGTACATCAGCGTCAGAGCGCTGCAGGAGGTTCTAGAGCTCTACCCAGAATATGGCAGCCGCTTCAACGAGGACATACACCAAAACCTCACCTACAACCTCAGAGAG

Function

symbol description
kcnh4a Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport and regulation of membrane potential. Predicted to act upstream of or within potassium ion transport; regulation of ion transmembrane transport; and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in forebrain and hypothalamus. Orthologous to human KCNH4 (potassium voltage-gated channel subfamily H member 4).
kcnh4 Predicted to enable voltage-gated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport and regulation of membrane potential. Predicted to be located in plasma membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be integral component of plasma membrane.

NR:

description
Potassium voltage-gated channel subfamily H member 4

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K04907 KCNH4, KV12.3; potassium voltage-gated channel Eag-related subfamily H member 4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_05467255_05480455.mRNA True 2074 mRNA 0.52 11 5467255 5480455

Neighbor

gene id symbol gene type direction distance location
CI01000034_05462429_05465076 NA coding downstream 2179 5462380 ~ 5465076 (-)
CI01000034_05441613_05448148 RAB5C, RAB5B coding downstream 19107 5441538 ~ 5448148 (-)
CI01000034_05428767_05438942 KAT2A coding downstream 28042 5427529 ~ 5439213 (-)
CI01000034_05419465_05426380 NA coding downstream 40875 5418660 ~ 5426380 (-)
CI01000034_05356235_05375111 NA coding downstream 91802 5355899 ~ 5375453 (-)
CI01000034_05491347_05493196 NA coding upstream 10600 5491055 ~ 5493255 (-)
CI01000034_05509621_05566772 NA coding upstream 29166 5509621 ~ 5566772 (-)
CI01000034_05601190_05607136 STAT5B, STAT5A, STAT5, STA5B coding upstream 120677 5601132 ~ 5607169 (-)
CI01000034_05681798_05699059 RBTSTAT3, STAT3 coding upstream 201038 5681493 ~ 5699120 (-)
CI01000034_05721684_05742044 NA coding upstream 241108 5721563 ~ 5742044 (-)
G172680 NA non-coding downstream 250253 5211951 ~ 5217002 (-)
CI01000034_05176199_05177220 NA non-coding downstream 253203 5175614 ~ 5177220 (-)
G172719 NA non-coding downstream 306128 5160849 ~ 5161127 (-)
G172716 NA non-coding downstream 311570 5155486 ~ 5155685 (-)
G172714 NA non-coding downstream 314560 5152029 ~ 5152695 (-)
G172771 NA non-coding upstream 32073 5512528 ~ 5512796 (-)
G172696 NA non-coding upstream 48444 5528899 ~ 5535870 (-)
G172692 NA non-coding upstream 59430 5539885 ~ 5557975 (-)
G172776 NA non-coding upstream 96988 5577443 ~ 5577774 (-)
G172782 NA non-coding upstream 245926 5726381 ~ 5765635 (-)
G172593 NA other downstream 472312 4992960 ~ 4994943 (-)
CI01000034_04216451_04218876 NA other downstream 1249513 4216212 ~ 4221881 (-)
CI01000034_04165535_04172272 KCTD13 other downstream 1295085 4165373 ~ 4172272 (-)
G172151 NA other downstream 2069442 3391144 ~ 3451802 (-)
G172016 NA other downstream 2230640 3234963 ~ 3236615 (-)
G172800 NA other upstream 308577 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 317115 5795835 ~ 5811781 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00016920 NA coding CM030122.1 CM030122.1 34679512 ~ 34698405 (+)