Gene
RNA
| Item | Value |
|---|---|
| gene id | G172680 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000034 |
| NCBI id | null |
| chromosome length | 5914002 |
| location | 5211951 ~ 5217002 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU196185 | True | 1169 | lncRNA | 0.38 | 2 | 5211951 | 5217002 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000034_05189944_05197158 | NA | coding | downstream | 14420 | 5189884 ~ 5197531 (-) |
| CI01000034_05176199_05177220 | NA | coding | downstream | 34731 | 5175614 ~ 5177220 (-) |
| CI01000034_05167889_05175190 | ANKRD40 | coding | downstream | 36639 | 5167889 ~ 5175312 (-) |
| CI01000034_05147520_05150640 | WFIKKN2, WFIKKN2A | coding | downstream | 61311 | 5147006 ~ 5150640 (-) |
| CI01000034_05093584_05096564 | NA | coding | downstream | 115387 | 5093062 ~ 5096564 (-) |
| CI01000034_05236100_05264059 | ACLY, ACLYA | coding | upstream | 18130 | 5235132 ~ 5264546 (-) |
| CI01000034_05269689_05276880 | TTC25 | coding | upstream | 51223 | 5268225 ~ 5277297 (-) |
| CI01000034_05281481_05288563 | NA | coding | upstream | 64355 | 5281357 ~ 5288580 (-) |
| CI01000034_05302438_05326245 | ZNF385C | coding | upstream | 85286 | 5302288 ~ 5326245 (-) |
| CI01000034_05356235_05375111 | NA | coding | upstream | 138897 | 5355899 ~ 5375453 (-) |
| G172719 | NA | non-coding | downstream | 50824 | 5160849 ~ 5161127 (-) |
| G172716 | NA | non-coding | downstream | 56266 | 5155486 ~ 5155685 (-) |
| G172714 | NA | non-coding | downstream | 59256 | 5152029 ~ 5152695 (-) |
| G172706 | NA | non-coding | downstream | 111466 | 5100281 ~ 5100485 (-) |
| G172645 | NA | non-coding | downstream | 157354 | 5053707 ~ 5054597 (-) |
| G172771 | NA | non-coding | upstream | 295526 | 5512528 ~ 5512796 (-) |
| G172696 | NA | non-coding | upstream | 311897 | 5528899 ~ 5535870 (-) |
| G172692 | NA | non-coding | upstream | 322883 | 5539885 ~ 5557975 (-) |
| G172776 | NA | non-coding | upstream | 360441 | 5577443 ~ 5577774 (-) |
| G172782 | NA | non-coding | upstream | 509379 | 5726381 ~ 5765635 (-) |
| G172593 | NA | other | downstream | 217008 | 4992960 ~ 4994943 (-) |
| CI01000034_04216451_04218876 | NA | other | downstream | 994209 | 4216212 ~ 4221881 (-) |
| CI01000034_04165535_04172272 | KCTD13 | other | downstream | 1039781 | 4165373 ~ 4172272 (-) |
| G172151 | NA | other | downstream | 1814138 | 3391144 ~ 3451802 (-) |
| G172016 | NA | other | downstream | 1975336 | 3234963 ~ 3236615 (-) |
| G172800 | NA | other | upstream | 572030 | 5789032 ~ 5789738 (-) |
| CI01000034_05795972_05811363 | NA | other | upstream | 580568 | 5795835 ~ 5811781 (-) |
