CI01000034_05302438_05326245 (ZNF385C)


Basic Information

Item Value
gene id CI01000034_05302438_05326245
gene name ZNF385C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5302288 ~ 5326245 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_05302438_05326245.mRNA
GTACGACTGCTCAGGGGAGCCCCCTGCTGGCGTCATTACCGGTGCAGGGTCGCCCGCTGCAGACCCCTCTGGACCTGAAACACTTCCTGCCCTTCCGGCTCAGTGGCTCCTCCCCCCTCAGCCTATTCCCCAACTTCAACACTATGGACCCGGTGCAGAAGGCCGTGATAAACCATACGTTTGGTGTTCCTCAGTCCCTGAAGAAAAAACAGGTCATCTCATGCAATATCTGCCACCTGCGCTTCAACTCCACGCTGCAGTCTGTGACTCAGACCCTGTCGTCAGGGTGGATGATGCTCAGTCTAGTTCAGTGGTCCTGACACCGATATCGGAGGTGTCGTCTGCGGACCTGTCTGTCTCCTCCCCTCACTCCCAGCACCCAGACGGTCTGCTGGATCCTGCCGGTGCCACCAGTGAGACAGGCGCTCAGCAGGACAGCCCTACGGGGGACACACCAGCAGAGAAAGACCCCAAAAAGGCCAAACAACATCTGCATTGCCCCATCTGCAAAGTCACCGTCAACTCCACCATTCAGATGGAAGCTCATAATAGTGGCACCAAGCATAAACTAATGATGGATGGACAGAGTGTGTTGCCCCGACGACGAGGGAAAGCAATGTCATCCCGCGCCTCATGTAAAAGCAAGCGATTGGCCAGTAAGGGAAGTGTGGGCGTGGCCAGCAAGAGCTTCTACTGTGAAGTTTGCGAGATCCATGTTAACTCTGAGACTCAACTCAGCCAGCACATGAACAGCCGAAGGCACAAGGATAGACTGGCTGGGAAGCCCCCGAAGCCCAAGTTCAACCCTCACACCAAGAGCCAGCCTACCTCAGCAGCATCGCAGGGTGTCAGATGGAACGGTTATGCGAGTGGTGCCGTGTCTGCAATGAAGAAAGTTATCAGCCAATGCAATCTCTCCTCTCTGTCCTCGCAGACTAAACTGGTTCTACAGAAGCAATTGACTAAAAATTTGGCCGCCAGCTTCCTGCCCACCCACATGACTCCGCCCACCCTCTGCACAGTCGCGGCCAATCCGCTTGCACTGCGACACCCACCGGGCACTACTTTCATTCAGACGCCGATCCTCGGCCCCGCCCTCTTTAGGCCAGCGCCTGGACCTCTGAGAGCCACACACACTCCCATCATATTTTCCCCTTATTGATCACCCATAAACAAAATAGACATGCTCTTTCAACAAGGGCGCATATTCACGTGATTTAGTCTTACGATCCGATCTCAGTACTGACGGTCTCTGTGCAAACTACGTCCGTGCTCCCGCTCTCTCCACGCTGTATACACGCGTATATATAAA

Function

symbol description
znf385c Predicted to enable nucleic acid binding activity and zinc ion binding activity. Located in nucleus. Is expressed in Purkinje cell. Orthologous to human ZNF385C (zinc finger protein 385C).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_05302438_05326245.mRNA True 1312 mRNA 0.55 7 5302288 5326245

Neighbor

gene id symbol gene type direction distance location
CI01000034_05281481_05288563 NA coding downstream 13708 5281357 ~ 5288580 (-)
CI01000034_05269689_05276880 TTC25 coding downstream 24991 5268225 ~ 5277297 (-)
CI01000034_05236100_05264059 ACLY, ACLYA coding downstream 37742 5235132 ~ 5264546 (-)
CI01000034_05189944_05197158 NA coding downstream 104757 5189884 ~ 5197531 (-)
CI01000034_05176199_05177220 NA coding downstream 125068 5175614 ~ 5177220 (-)
CI01000034_05356235_05375111 NA coding upstream 29654 5355899 ~ 5375453 (-)
CI01000034_05419465_05426380 NA coding upstream 92415 5418660 ~ 5426380 (-)
CI01000034_05428767_05438942 KAT2A coding upstream 101284 5427529 ~ 5439213 (-)
CI01000034_05441613_05448148 RAB5C, RAB5B coding upstream 115293 5441538 ~ 5448148 (-)
CI01000034_05462429_05465076 NA coding upstream 136135 5462380 ~ 5465076 (-)
G172680 NA non-coding downstream 85286 5211951 ~ 5217002 (-)
G172719 NA non-coding downstream 141161 5160849 ~ 5161127 (-)
G172716 NA non-coding downstream 146603 5155486 ~ 5155685 (-)
G172714 NA non-coding downstream 149593 5152029 ~ 5152695 (-)
G172771 NA non-coding upstream 186283 5512528 ~ 5512796 (-)
G172696 NA non-coding upstream 202654 5528899 ~ 5535870 (-)
G172692 NA non-coding upstream 213640 5539885 ~ 5557975 (-)
G172776 NA non-coding upstream 251198 5577443 ~ 5577774 (-)
G172782 NA non-coding upstream 400136 5726381 ~ 5765635 (-)
G172593 NA other downstream 307345 4992960 ~ 4994943 (-)
CI01000034_04216451_04218876 NA other downstream 1084546 4216212 ~ 4221881 (-)
CI01000034_04165535_04172272 KCTD13 other downstream 1130118 4165373 ~ 4172272 (-)
G172151 NA other downstream 1904475 3391144 ~ 3451802 (-)
G172016 NA other downstream 2065673 3234963 ~ 3236615 (-)
G172800 NA other upstream 462787 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 471325 5795835 ~ 5811781 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025209 znf385c coding NC_007114.7 CM002887.2 17744339 ~ 17860047 (+)