CI01000034_05428767_05438942 (KAT2A)


Basic Information

Item Value
gene id CI01000034_05428767_05438942
gene name KAT2A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5427529 ~ 5439213 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_05428767_05438942.mRNA
AACTAAACGTTTCATAAGCTTATTTTCTCCGCTTTTAAAGTGATATAGCACAATAAGTAGCTCAAGTGTTTAATGCCCCCCAGTGGAAAGTATTATATCGTTTTATTCTGTAGTACAGCTTATAGTACTACATCTCCCAGCATCCTCACATATTGCGCACGCGCAGTGCAGTGGTGAGACCGTGTATCGAAAACCATCACAAAACTTTATTGAAACGGCACAGGGTGGAAGTGTGCACGGCGATCCTAGGAGGGGAAGTGAGGCTGCTGATATGGCGGACCCGGTGGCACAGACCTCCGCGCAGCCCCGGCTTCAGCAAGCTCAGTCCAGCGGCCCGGCAGGATCCAACCCAAACCCCGGAGCCGGGAGCAGCGACCCGGCCCGACCAGGCCTGAGTCAACAGCAGTGGTCCAGCCAGAAGAAAGCCCAAGTCCGCTCGTTTCCGCGGGCTAAAAAGCTGGAGAAACTCGGAGTGTTTTCCTCCTGCAAGGCGAATGATGCTTGTAAATGTAATGGTTGGAAAAACCCCAATCCACCAACAGCCGCTCGTATGGAGCTCCAGCAGCAGGCAGCCAGCCTGACAGAGGCCTGCCGAAGCTGTGGACACTCTTTGGCGGAGCACGTTTCTCACCTGGAGAATGTGTCTGAGGAGGAGATTAACCGGTTGTTGGGGATGGTAGTGGACGTGGAGAATCTCTTCATGTCTGTCCATAAAGAGGAAGACACAGACACCAAGCAAGTCTACTTTTATTTGTTCAAGTTGCTGAGGAAGTGTATTCTGCAGATGGGGAAGCCAGTGGTGGAAGGCTCTCTCGGTAGCCCTCCCTTTGAAAAACCTAACATAGAACAAGGGGTGTTGAACTTTGTTCAGTATAAGTTTAGTCATTTGGCGCCTAAGGAGAGGCAGACCATGTATGAGCTCAGTAAGATGTTTCTGCTCTGTCTGAACTACTGGAAGCTGGAGACTCCGTCACAGTTCCGTCAGAGGGCTCAGAAAGAGGATGCAGCCGCCTACAAAGTTGATTATACTAGGTGGCTGTGTTACTGTCACGTTCCTCAGAGCAATGACAGCTTGCCACGGTATGAGACCTGTCAGGTGTTCGGACGCAGTCTGCTGAAGTCCATCTTCACCGTCACCCGCAGACAGTTACTGGAGAAGTTCAGAGTGGAGAAAGACAAGCTCCCACCAGAGAAACGCACTCTGATCCTCACACACTTCCCCAAGTTTCTTTCCATGCTGGAAGAAGAAATCTATGGAGAAAACTCCCCCATTTGGGAGGCAGACTTCACCATGCCAGCCTCAGAGGGGGCACAACTGGGGCATCAAACAGTACTGAGTCCAGTCTCGGTGTCTGGCTCTCCTCTCAGTAAGGGTAGCAGCGGTTCTGCTCTGGGTGTTACAGGTTTGGACGTCACTTCCTCTGAACCAATAACCGGAGAGAAGCGAAAGCTTCCTGAGGCACTGACTCTGGAGGATGCAAAGCGGATCCGAGTAATGGGCGACATCCCAATGGAACTGGTCAATGAAGTCATGAAAACAATCACAGACCCTGCTGCCATGCTGGGGCCAGAGACTAGTCTGTTGTCGGCAAACGCGGCTCGTGATGAGACGGCTCGTCTGGAGGAGAGGAGAGGCATCATTGAGTTCCATGTGATTGGTAACTCTCTCTCTCAGAAGTCCAATAAGAAGATTCTAATGTGGCTCGTGGGCCTGCAAAATGTTTTCTCCCATCAACTTCCCCGCATGCCCAAAGAATACATCACACGTCTTGTGTTTGACCCGAAGCACAAGACTTTGGCTCTGATTAAAGATGGCCGTGTGATTGGAGGGATCTGCTTCAGGATGTTCCCCACTCAGGGATTCACAGAGATCGTCTTCTGTGCAGTCACCTCCAATGAACAGGTCAAGGGCTACGGCACACACCTGATGAATCATCTTAAGGAGTACCACATCAAGCACAGCATTCTGTATTTTCTCACTTATGCTGATGAATACGCCATTGGCTACTTCAAGAAACAGGGCTTCTCCAAAGACATCAAAGTGCCGAAGAGCCGCTACCTTGGTTACATCAAAGACTACGAGGGAGCCACGCTGATGGAGTGTGAACTCAATCCCAGAATACCCTACACCGAACTCTCACACATCATAAAGAGACAGAAAGAGATAATCAAGAAACTGATCGAGAGGAAACAGAATCAGATCAGGAAAGTGTATCCTGGTCTCACCTGCTTTAAAGAGGGTGTGCGGCAGATTCCTGTGGAGAGTATACCAGGCATCAGAGAGACTGGTTGGAAACCTAGTGCCAAGGAGAAAAGTAAAGAGCTGAAAGATCCGGATCTGCTTTACAACATGCTAAAGAATCTACTCGCTCAGATTAAAACGCATCCAGACTCCTGGCCTTTCATGGAGCCAGTGAAGAAATCTGAAGCTCCTGACTATTATGAGGTTATCCGCTTCCCCATTGATTTGAAAACCATGACGGAGCGTCTGAAGAACCGGTATTATGTCACAAAAAAGCTGTTTATCGCCGACCTGCAGCGTGTGATCACGAACTGCAGAGAATACAACCCTCCAGACAGCGAGTACTGCAAGTGTGCCAACACACTGGAGAAGTTTTTCTACTTCAAACTGAAAGAGGCTGGGCTCATTGACAAGTAACGGACATCTAGCCTAGGACAAGGGACCAGTTAGATAATATAGAGAGTGTGATCACATACATACACACACACACACACGTTTTATTTGGATGAACGACATCCAAACCTGTCGAAAGTTGCTGCATTCTGTTACTATTTTTTCTTTATACAATATAGTTATAAAACACAAGGTTATATTCATGTGTATGACTCTGCCATGCCAGTGCATTAAGGGAAAATGGAAACTGAAAGTGTTCAATGTGGCTGTTAGCTTAGACAGAAATCACCATTAGCAGTTCCGTTCTTCTTTCTCATCCTCCACCATAAAACGAATGACTCACGCACACTGCAAGCTGTTGCTCTACGTACACAAACATTCAGTCGTGTAACTTAAAGTCTTATCCTGTGAAACTCCTCTGACCCGAGATGCTGCAGCCAAAGACGGACAATATTTGGCCTCTAGTGATGTCACTGCAGTGGCATCATTCTCTGCCAAAGCTGTTTGAAACAGCCGGTCAGTCATATACAGGATGTGCCTCTTCAGTATAAATCTGAAAATATGAGGGAAATCATTTTGAGTTGTTCCGTCAGTGGCTTTTATTGGAGAAAAGATGTCTCCTTCTATGACAGATCACTTCAAGTAACAATAGTCAAGTGTTTTTTTTTTTTCTCCTGGGAAATTACTGCTGTCCACTTTGCTTTGTCAGTGCAGTCGTGAAGTGTTTATCTTTGTTCGCAAACCAATATTTGTCTTCTTTGAAAGCTTTCAGTGTGTCATGACCCCAGGCGTAAGCATTCTGTTTTTGCAACCTGCTTTTCACACCCATTTGGGACCATGAACAACTATTTCCATTTCAATCTCAACTGCACAACACTTTGTCTGCTACTACCTAAAATACTCCAAATGGACAACTGCACAAACCTCTATATCCAAATATGTATGTGATTTCTGCAATACAGCATGTTCTCTGCTAGTTTACCACTCACACACACGGGACAGGACAGCAAGTTTATTTTTTAGTCTCTCGTAATGGGCATTTACTTGAATCATAACTTCGACGAACTGCTGCAATGTTGATGTATTATCAGGGTTCTTTTGGATTTACTGTGTCACTGTTGACCCCTCTCGTGAAGAGGACAGACGGGTGTGATAGAAAGCAGTTGGAAATGGTTACATTTGGATGATGCATGTAAATTGCTACGGTTCTGTGTACTATAATTCTGTTTTTTGTTTTTTTTGTTTTTTGTTTTGAAAATAAA

Function

symbol description
kat2a Predicted to enable N-acyltransferase activity; chromatin binding activity; and transcription coactivator activity. Involved in histone acetylation; regulation of bone development; and regulation of cartilage development. Acts upstream of or within bone morphogenesis; heart development; and limb development. Predicted to be located in centrosome and nucleus. Predicted to be part of histone acetyltransferase complex. Is expressed in brain; fin; head; heart; and otic vesicle. Orthologous to human KAT2A (lysine acetyltransferase 2A).

GO:

id name namespace
GO:0021537 telencephalon development biological_process

KEGG:

id description
K06062 PCAF, KAT2, GCN5; histone acetyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_05428767_05438942.mRNA True 3897 mRNA 0.46 18 5427529 5439213

Neighbor

gene id symbol gene type direction distance location
CI01000034_05419465_05426380 NA coding downstream 1149 5418660 ~ 5426380 (-)
CI01000034_05356235_05375111 NA coding downstream 52076 5355899 ~ 5375453 (-)
CI01000034_05302438_05326245 ZNF385C coding downstream 101284 5302288 ~ 5326245 (-)
CI01000034_05281481_05288563 NA coding downstream 138949 5281357 ~ 5288580 (-)
CI01000034_05269689_05276880 TTC25 coding downstream 150232 5268225 ~ 5277297 (-)
CI01000034_05441613_05448148 RAB5C, RAB5B coding upstream 2325 5441538 ~ 5448148 (-)
CI01000034_05462429_05465076 NA coding upstream 23167 5462380 ~ 5465076 (-)
CI01000034_05467255_05480455 KCNH4, KCNH4A coding upstream 28042 5467255 ~ 5480455 (-)
CI01000034_05491347_05493196 NA coding upstream 51842 5491055 ~ 5493255 (-)
CI01000034_05509621_05566772 NA coding upstream 70408 5509621 ~ 5566772 (-)
G172680 NA non-coding downstream 210527 5211951 ~ 5217002 (-)
CI01000034_05176199_05177220 NA non-coding downstream 213477 5175614 ~ 5177220 (-)
G172719 NA non-coding downstream 266402 5160849 ~ 5161127 (-)
G172716 NA non-coding downstream 271844 5155486 ~ 5155685 (-)
G172714 NA non-coding downstream 274834 5152029 ~ 5152695 (-)
G172771 NA non-coding upstream 73315 5512528 ~ 5512796 (-)
G172696 NA non-coding upstream 89686 5528899 ~ 5535870 (-)
G172692 NA non-coding upstream 100672 5539885 ~ 5557975 (-)
G172776 NA non-coding upstream 138230 5577443 ~ 5577774 (-)
G172782 NA non-coding upstream 287168 5726381 ~ 5765635 (-)
G172593 NA other downstream 432586 4992960 ~ 4994943 (-)
CI01000034_04216451_04218876 NA other downstream 1209787 4216212 ~ 4221881 (-)
CI01000034_04165535_04172272 KCTD13 other downstream 1255359 4165373 ~ 4172272 (-)
G172151 NA other downstream 2029716 3391144 ~ 3451802 (-)
G172016 NA other downstream 2190914 3234963 ~ 3236615 (-)
G172800 NA other upstream 349819 5789032 ~ 5789738 (-)
CI01000034_05795972_05811363 NA other upstream 358357 5795835 ~ 5811781 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025207 kat2a coding NC_007114.7 CM002887.2 17653784 ~ 17680114 (+)
bowfin (Amia calva) AMCG00016922 kat2a coding CM030122.1 CM030122.1 34727405 ~ 34757001 (+)