CI01000034_05509621_05566772


Basic Information

Item Value
gene id CI01000034_05509621_05566772
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5509621 ~ 5566772 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_05509621_05566772.mRNA
ATGGCTGAGCCGCAGGCTTCCGAATCCGTGGCGGGACCCTTATACGAGCTCGTCTCCGAGGCGACCACCCCGACCCGGGACGCGGCGGCGGCGGCGGCACTGAGCATCAGCGATACCTACCAGACATACCTGGACGTGTCGGCGGCTGCGCACCCAGTGTATGGGGCCGAAGGGGTATACTCTAACGGACGGTACAGGGAGCACAGCAGCCCGCGGATCGGTACCCGGAACCGCGACAGTTCTGCAGAGAGGTGCACCGGTACCGGGAATCCACCTTGCGGTATTATGAAGGATGGTTCAAAGCAGAGGCAGGCAAGGAAGAAGACTGTCTCATTCAGCTCCATGCCAAGTGACCGCAAGATGAACAGCACGGCTGCCTGCATGGCCTTCATGATGGAAGGCTGTGAGATGAAAAAAGTTCGCTCCAATTCTCGCATGTACAATCGTTACTTCCTATTGGACCCTGACATGCGCTGGCTCCGCTGGGAACCATCAAAGAAAGACTCCGAGAAAGCCAAGCTTGAGATCAAGAGCATCAAAGAAGTTCGGTTGGGAAAGAAAACACCCGTCCTACGCAGCAACGGCCTTTCGGATCAGTTCCCGGATGAGTGTGCTTTCTCAATTATATATGGAGACAACTATGAGTCTTTGGATCTGGTCGCAAGCACGGCAGAAGTGGTTAGCACCTGGGTGATGGGACTGCGGTACCTGGTCTCATATGGGCGGCACATGGTGGGCGTAGTCGAACCCAATCAACCTAGTGTAAGAACATCCTGGATTGGGTCAGTGTTCGAGCTAGCTGATCCACAAAGGCAAGGACACATTGACCTATTCCGGGCCACCCAAATCATCAAGGGTCTCAATCCTGGCATGAGGGAGTCTCGCATTGAACTGAAGTTCAAAGAGCTACAAAAGGCCAAGGACTGCTATGGGGAAGGCATTGATTTAGACACTTTTGTAGAAGCCTACTGTGAACTGTGCACACGTCCTGAGATCTTTTTCTTGCTGGTTCAGTTCTCCAGCAACAAAGAGTACCTGGACTCCAAAGACTTGATGCTCTTTGTGGAGGTGGAGCAGGGAGTGGAGGGAGTCACAGAGGAAATGTGTCGAGAGATTGTGCACAAGTACGAACCCTCTGCTGAAGGACGTAACAATGGTTACTTGTCCATAGATGGCTTCACACACTACCTCCTGTCATCCGAGTGCCACATTTTTGACCCGCAGCACAAGCATGTTTGTCAGGATATGACGCAGCCCCTTTCACACTACTACATCAACTCTTCCCACAACGCCTCACTTTTGGAAGATCACTATTGGGGCTCATCGGACCTCAGCAGCTACATTAGGGCGCTACGCATGGGTTGTCGAAGCATAGAGGTTGTAGTCTGGGATGGCCCTGACTGTGAGCCCGTAGTCTATGTTGGTAGCTCTGTTGCATCCCAGCTGGCCTTCTGTAAAGTTCTAGATGTCATTAACCAGTATGCCTTCGAGGGTTCAGAGTATCCACTAATCCTCTGTCTTGTCACACACTGCAGTGTCCCCCAGCAGAGGGTCATGGCTCAACACCTGAAGAAGATTCTTGGGGACAAACTGCACATTGAGCCTCCTAATATGGAGGACCATTACTTGCCCTCCCCTGAGAAACTCAAGGGAAAGATACTCATAAAAGGGAAGCGCCTGCCTACAGACTCTCACGAGTCTGAAGGGGAGGTCACGGATGAAGAAGAAGGCTTTGAGATGTCCAGGAGAATGATGGGTGTAGATGACAAGGACCAGCTCAACGGGATTGGCTGCAAACGATTACGACTCTGCAAAGAACTTTCTGACCTGGTCACCCTCTGCAAGTCTGTGCAGTTTCGTGACTTTGAGACGTCGAAACGGGAACAGAGGTATTGGGAGATTTGCTCCTTTAATGAGGTTGATGCCAACCACTTTGCCAATGAGTTTCCTGAGGACTTTGTCTCTTACAATAAGCGATTTCTGTCACGGGTATACCCAACGCCCATGCGCATTGATGCTAGCAACATGAATCCACAGGACTTCTGGAAGTGTGGTTGTCAAATTGTGGCAATGAATTACCAGACTCCAGGTTTGATGATGGATTTGAACCTTGGCTGGTTTAGGCAAAACGGCAACTGTGGCTATGTCCTGCGTCCAGCAATAATGCGTGAGGAGGTGTCGTATTTCAGTGCCAATGCTCGTGACTCGCTTCCTGGAGTCTCAGCCCAGCTCCTCCACATCAAGGTGATCAGTGGTCAAAACCTACCAAAGCCTCGAGGCTCTGCTGCTAAAGGCGACGTGGTAGAGCCATACATCTATGTGGAGATCCATGGAATTCCTGCAGACTGCACAGAACAACGCACAAAAACTGTCTCGCAAAATGGTGACAATCCGATTTTTGACGAAAGCTTTGAGTTCCAGATCAACCTTCCCGAACTGGCTGCTTTGCGTTTTGTTGTCCTTGATGATGACTACATTGGCGATGAATTTATTGGCCAGTACACCATTCCTTTTGAGTGCCTGCTTCCTGGCTACCGGCACGTACCATTGCAGTCGCTTACAGGGGAGTTTTTGCCTAACACCACATTGTTTGTTCATGTTGCTATTACAAACCGGCGAGGTGGGGGTAAGGCCCATAAGCGGGGTCTCTCTGTGAGAAAGGGCCGCAAAACAAGGGAATACACCTCTACTAAGACCACAGGGATCAAAGTAGTAGATGAGCTCTTCAGGGCATCGACCCAGCCACTACGGGAAGCAACAGACCTACGGGAAAACGTACAGAATGCCATGGTGTCGTTCAAGGAGCTCTGCGGTCTGACTCCGGCAGCTAACATGAAACAGTGTATCCTGACTGTGTCCTCCTGGCTGATGAACAGCGAGCGAGCGCTACGGGTAATGGTAAATCTCAGCGAGGCCTACCCCACCATGGAAGCCCATGGCCCCATTCCAGAGCTACTGCGTAAAGTGCTCACCGCTTATGACACGATGATCCAGACAAGTCGTACACTGATCGAATCAGCCGATGGTGTGTACTCTAAACTTACACAAGCACAGCGAGCAGGTATT

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K15370 PLCL2; inactive phospholipase C-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_05509621_05566772.mRNA True 3066 mRNA 0.51 4 5509621 5566772

Neighbor

gene id symbol gene type direction distance location
CI01000034_05491347_05493196 NA coding downstream 16366 5491055 ~ 5493255 (-)
CI01000034_05467255_05480455 KCNH4, KCNH4A coding downstream 29166 5467255 ~ 5480455 (-)
CI01000034_05462429_05465076 NA coding downstream 44545 5462380 ~ 5465076 (-)
CI01000034_05441613_05448148 RAB5C, RAB5B coding downstream 61473 5441538 ~ 5448148 (-)
CI01000034_05428767_05438942 KAT2A coding downstream 70408 5427529 ~ 5439213 (-)
CI01000034_05601190_05607136 STAT5B, STAT5A, STAT5, STA5B coding upstream 34360 5601132 ~ 5607169 (-)
CI01000034_05681798_05699059 RBTSTAT3, STAT3 coding upstream 114721 5681493 ~ 5699120 (-)
CI01000034_05721684_05742044 NA coding upstream 154791 5721563 ~ 5742044 (-)
CI01000034_05744195_05777951 ATP6V0A1, ATP6V0A1A coding upstream 177252 5744024 ~ 5777951 (-)
CI01000034_05795972_05811363 NA coding upstream 229063 5795835 ~ 5811781 (-)
G172680 NA non-coding downstream 292619 5211951 ~ 5217002 (-)
CI01000034_05176199_05177220 NA non-coding downstream 295569 5175614 ~ 5177220 (-)
G172719 NA non-coding downstream 348494 5160849 ~ 5161127 (-)
G172716 NA non-coding downstream 353936 5155486 ~ 5155685 (-)
G172714 NA non-coding downstream 356926 5152029 ~ 5152695 (-)
G172776 NA non-coding upstream 10671 5577443 ~ 5577774 (-)
G172782 NA non-coding upstream 159609 5726381 ~ 5765635 (-)
G172800 NA non-coding upstream 222484 5789032 ~ 5789738 (-)
G172845 NA non-coding upstream 309959 5876731 ~ 5882670 (-)
G172593 NA other downstream 514678 4992960 ~ 4994943 (-)
CI01000034_04216451_04218876 NA other downstream 1291879 4216212 ~ 4221881 (-)
CI01000034_04165535_04172272 KCTD13 other downstream 1337451 4165373 ~ 4172272 (-)
G172151 NA other downstream 2111808 3391144 ~ 3451802 (-)
G172016 NA other downstream 2273006 3234963 ~ 3236615 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location