CI01000034_05721684_05742044


Basic Information

Item Value
gene id CI01000034_05721684_05742044
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5721563 ~ 5742044 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_05721684_05742044.mRNA
GACTGCGTTCTTGCAGACTGGGCCACGTGTGTGCGTGCTTCTGCTCTCTGTCTGCAAGACTCGATGGAGGTGGCAGTGGTGACCCTGAGAAGTCTGAGGCCCAGGCTACCGGCATGATGGTCCTGGCACTCCTAGACAAAATCATAGGTGTGGTGGACCAGATCCAACACACTCAAACAGGTCTCGAGGCCAAGCAGGAGACCATGGAGAAGAACATGAGCAGCATCCAGACGGAGCTGGCCAAGCTGGCGAAGAGTCACGTTGGAACGTCTGGGACAGTCAACAAGCTCCTGGACAAGGTTCGAAAGGTGAACGTCAATGTGAAGAGCGTGCGCACGGACCTGGAGAAGCAAGCAGGACAGATAAAAAAACTAGAGAACAATGAACATGAGCTCCTCAAGAGGAAGAACTTCAAAGTGCTCATCTTCCAGGACAAGGTGAAACCTGTGAAGGTCTCTAAGAAGCCAGTGGCTGCAGGAGAAGAAGGAGAGCAGGTCCTGAGTGAAGGAGGTGAAGAAGAACATGGCTCTGAAGAGGAAGTGGAGGTTGAGGAGATCATTGAGGAATCTCGTGCTGAGCGCATCAAGCGCAGCGGCCTCCAGAAGGTGGACGAGCTGAAAAAGGCCTTCAGCAAGGAGCAGATGGAGAAGACCAGGCAGAAAACCAAGGAGAACCTGGAAAAAACCCGACAGAGAACGAAAGAGAACCTGGAGAAGACACGTCAGAGAACCCGAGAGAACCTTGAGAAGACCAAGAAGAGCCTGAGCAAGAAGATGGATAAGCTGGGAACAAAGATGACCCCTAACACCCAGCGCCGTGAAAAGATCCGTAGCTCCAGAGAGAAGATGAAGAAGTCACTCACACCCGACCACACCGTCTACGCCCGCTCCAAATCGACCACCTACCGTGTACCGCCCTTCACCTTCCACGTCAAGAAGGAGGGGCTTGTGGTGCAGGAAGGAGGCCTAGTGTCAAAGGTGGAGGAAGGTGAACTGGTCAGTATTGACAGCCCAGAGATGGAGGCCTTGCTAGAGGCAGCTGATCACTCACGGCTGGCGTTCCAGGAGACGGTGAGACCAAGGGAGAAGGCTGGCCAGTAAGTTCAGTATGTTAAGTCCTGGAAAAATCTCAACACCGAGAAAAAAAAAAAGTGTGGAGGTCTGGAGATAAATCAGGATAATGGGATGTAGGGAACTGAGATGTGCTTGATGGCGGATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_05721684_05742044.mRNA True 1221 mRNA 0.52 4 5721563 5742044

Neighbor

gene id symbol gene type direction distance location
CI01000034_05681798_05699059 RBTSTAT3, STAT3 coding downstream 22443 5681493 ~ 5699120 (-)
CI01000034_05601190_05607136 STAT5B, STAT5A, STAT5, STA5B coding downstream 114394 5601132 ~ 5607169 (-)
CI01000034_05509621_05566772 NA coding downstream 154791 5509621 ~ 5566772 (-)
CI01000034_05491347_05493196 NA coding downstream 228308 5491055 ~ 5493255 (-)
CI01000034_05467255_05480455 KCNH4, KCNH4A coding downstream 241108 5467255 ~ 5480455 (-)
CI01000034_05744195_05777951 ATP6V0A1, ATP6V0A1A coding upstream 1980 5744024 ~ 5777951 (-)
CI01000034_05795972_05811363 NA coding upstream 53791 5795835 ~ 5811781 (-)
CI01000034_05833575_05834462 NA coding upstream 91359 5833403 ~ 5835139 (-)
CI01000034_05843208_05844043 LRRC3CB coding upstream 101135 5843179 ~ 5844043 (-)
CI01000034_05846112_05848878 TMEM86B coding upstream 103057 5845101 ~ 5848878 (-)
G172776 NA non-coding downstream 143789 5577443 ~ 5577774 (-)
G172692 NA non-coding downstream 163588 5539885 ~ 5557975 (-)
G172696 NA non-coding downstream 185693 5528899 ~ 5535870 (-)
G172771 NA non-coding downstream 208767 5512528 ~ 5512796 (-)
G172680 NA non-coding downstream 504561 5211951 ~ 5217002 (-)
G172800 NA non-coding upstream 47212 5789032 ~ 5789738 (-)
G172845 NA non-coding upstream 134687 5876731 ~ 5882670 (-)
G172593 NA other downstream 726620 4992960 ~ 4994943 (-)
CI01000034_04216451_04218876 NA other downstream 1503821 4216212 ~ 4221881 (-)
CI01000034_04165535_04172272 KCTD13 other downstream 1549393 4165373 ~ 4172272 (-)
G172151 NA other downstream 2323750 3391144 ~ 3451802 (-)
G172016 NA other downstream 2484948 3234963 ~ 3236615 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_025199 cavin1a coding NC_007114.7 CM002887.2 16976095 ~ 17012340 (+)