CI01000034_05843208_05844043 (LRRC3CB)


Basic Information

Item Value
gene id CI01000034_05843208_05844043
gene name LRRC3CB
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5843179 ~ 5844043 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_05843208_05844043.mRNA
CTGGTGTGCTCTTCTTTCTCCTGATGTTCGGGACTGTCAGTATCCCTATCGGCTGTCATGCTGTGGCCAGCTGCCTCTCTCTCACTTTCACCCTCCTCCTCCATGTCTTGGATGTGTGTCTGCCCCATCAAGCAGAAAACGGATGCCCAGAGAGCTGTTTCTGCTCGGAGAGTGTCGACGGCGGGCTGGTGGTCCGTTGTAGTGACATGCACTTGATTGCAGTGCCACGTGACCTTCCGAACACTACACAGCATCTATACCTAGACAACAACCTGCTGCTTAGCATACCATCTGATGCCTTTATAGGGCTCCCACTATTGTTCAAATTAGATCTTTCCCACAACAGGTTGGTCCACCTGGAGCCTGGAGCCTTTCAAGACCTTGCAGACTCATTGAGCAGCCTGGATCTTTCTTCTAACCAGCTGGAGACTCTGGACCCCAAGGCGTTTGGTGAACTCAGAGCCCAGACTAACCTCTCTCATAACCCCTGGCTGTGTGACTGTCGTCTGCAGCTGGCTATGCCACAGCTGCTCTTGGATCCCTCCTCGCTCACTGAGGTGGTGTGCAACACCTCTGAACCTGAAGAGCTGCAGGCTCAGGGTATGCCCTTCATCCTGGTAGCGACTGATCTTGACTTCTGCGCAGCACTCCGGAGGACCACTGACGTGGCTATGCTGATAACGATGTTTGGCTGGTTTACAATGGTTATATCTTATTTAGTTTACTATGTAAGGCACAACCAAGAAGATGCAATTCGCCACCTCGAGTATCTCAAGTCTCTGCCTAACAGGCAGGGCAGATCTGAGGAGTCGCTGACACTTAACACCAGGTTGTAACACAATTATGAATAACAGTTTTTAAAAAA

Function

symbol description
lrrc3cb Predicted to be active in extracellular matrix and extracellular space. Orthologous to human LRRC3C (leucine rich repeat containing 3C).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_05843208_05844043.mRNA True 865 mRNA 0.51 1 5843179 5844043

Neighbor

gene id symbol gene type direction distance location
CI01000034_05833575_05834462 NA coding downstream 8040 5833403 ~ 5835139 (-)
CI01000034_05795972_05811363 NA coding downstream 31398 5795835 ~ 5811781 (-)
CI01000034_05744195_05777951 ATP6V0A1, ATP6V0A1A coding downstream 65228 5744024 ~ 5777951 (-)
CI01000034_05721684_05742044 NA coding downstream 101135 5721563 ~ 5742044 (-)
CI01000034_05681798_05699059 RBTSTAT3, STAT3 coding downstream 144059 5681493 ~ 5699120 (-)
CI01000034_05846112_05848878 TMEM86B coding upstream 1058 5845101 ~ 5848878 (-)
CI01000034_05853721_05866514 GYS1 coding upstream 9678 5853721 ~ 5866514 (-)
CI01000034_05884735_05888543 KRAS.S, HRAS, NRAS, RASH, P-RAS, KRAS coding upstream 39863 5883906 ~ 5888543 (-)
CI01000034_05892022_05899583 SLC17A7, SLC17A7A, SLC17A7B coding upstream 47961 5892004 ~ 5899583 (-)
G172800 NA non-coding downstream 53651 5789032 ~ 5789738 (-)
G172782 NA non-coding downstream 77544 5726381 ~ 5765635 (-)
G172776 NA non-coding downstream 265405 5577443 ~ 5577774 (-)
G172692 NA non-coding downstream 285204 5539885 ~ 5557975 (-)
G172696 NA non-coding downstream 307309 5528899 ~ 5535870 (-)
G172845 NA non-coding upstream 32688 5876731 ~ 5882670 (-)
G172593 NA other downstream 848236 4992960 ~ 4994943 (-)
CI01000034_04216451_04218876 NA other downstream 1625437 4216212 ~ 4221881 (-)
CI01000034_04165535_04172272 KCTD13 other downstream 1671009 4165373 ~ 4172272 (-)

Expression


Co-expression Network