CI01000034_05833575_05834462


Basic Information

Item Value
gene id CI01000034_05833575_05834462
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 5833403 ~ 5835139 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000034_05833575_05834462.mRNA
AAAAACGGTGTCTTCTACAATACGCAAGACAGGTCCTGCATTTACTGGTAGGGTGGTAATGTATTGATCTTAATTGAATCAACATTGACTTGAGCTGAATAATGACGCTATTGCCTTCTGTAAAGCTGCTTTATAGCTGAATTTAATTTCACAGTTGATGAACTTGGCAAAATTGACTTTGTTATAGAACTGAATTGAACTAAATTGAGCTAAAAATCAACACTATTGTCTAAATACTAACACTGTTACTTTGCTGTTTATTAATCTGAAGCTGAGGTGCTATATACTGTAAATAAATGTGTAATAAAACATTTTTATTACAACCAAAAATTTAACATTTGGTATTTTCCTACCTTGAGTTATACTATATATAGTATATACTATAGCAACTATATATATCAATGTAAATTGTAAAGCAAAAATATATGTGTAAAGAGTAAATATTAATACTTCTGAAGTGTTTGTAACATTATAAATAAAACAGTTTGTTTTATAACAAAGAAATGTTAGAGTCTCAGAAATATTATGCATGTCAGACTTTATTAATTCAATCATAAATACAGATTTTATAGAATTTTCTTATTGCATAACAAAGCAATAAATTATTAAAGTACCTTTTCTTTTTTGCAGAAAGTTACCCTACTTCGTCAGTGCCAAAAAATTCTGAAGAAACTAAAATGGCAAATGGAGGTCCAATAACAAAGCTTGGTGTGTCCACCACTAAGGATGATGAGGAAATACTTGGAGCTCAAGGTTATCAGCTCCTCAATGCTGACCTCAATGAAGGTACTGGTAAAAACCGGGTCTTCCTTTGGTACAAGAAAGAGTGTGGCTTGAGACCGGTGACCAGGATCCAGTTTTCATTCTCAAGTGAAATGAAAGCTGGTCTGGTTAATGCTGGGTATGAGCTGGTCAACAAGGATCTGAATGCAGGAGTTGGTGGAGATCACATCTTTCTGTGGTACTTCTACGGCAGCACCGAATATGACCTTCCTATTGTGAACATCGAGGTAAGCAAAGATGCCAAAGAAGAGCCTGCTCTTCTGCAAGATGGCTGGGAGAGACTGGGCTGTGATCTGAACCGTGGTGCAGGAGGAAACTATATCTACCTGTGGGTGAAGAGAGAGAAGCCGAGCTACATCTGCGAGATCACGGCAACTGCTGACTTCACATCTGACAAGCAAAAGTTTGATCTTGGCTTCACTCGTGTGGATGAAGACACCAATCGTGGTGCTGGTGGAAACCATGTCTACCTTTGGTATCGGCGCACAACTGATAAAAGCAAAGCTCTCACTGCTCTTAATGTGTCCACCGACTTCCAGGAGAATGTAAGGCTTCAGAATGAAGGCTTCAAAAAGGTCAGTGTTAATCTGAATGCCGGAACCACTGGAAACGATGTCTACGCGTGGTACCTGAACGAAGGATGTGAATCGCAGATCAAAGCCATGGTTCTACTGATCAACCCTAACGCCTGGCCGGTGTATCAGAAAGCTGGTGTCAACTTTGTTGACAAAAATCTCAACGAGGGCAACAAAGGCCAGAAAATGTACATAGCATACCAATAGTGCTGTAGCTTAAATAATCAAATTGGTGCCACTATATGGCAACTATAAGCAATTATTGAAAATCATAAAACATGATTTAAAAGCATATTGTCATTGAGGCTTTTGTAATACACTCAACCACACACACTTCAGTTGGCTTTTGTGATTTTGTTATAATGCATTATGAAATAAA

Function

NR:

description
hypothetical protein EH28_01244

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000034_05833575_05834462.mRNA True 1737 mRNA 0.38 1 5833403 5835139

Neighbor

gene id symbol gene type direction distance location
CI01000034_05795972_05811363 NA coding downstream 21622 5795835 ~ 5811781 (-)
CI01000034_05744195_05777951 ATP6V0A1, ATP6V0A1A coding downstream 55452 5744024 ~ 5777951 (-)
CI01000034_05721684_05742044 NA coding downstream 91359 5721563 ~ 5742044 (-)
CI01000034_05681798_05699059 RBTSTAT3, STAT3 coding downstream 134283 5681493 ~ 5699120 (-)
CI01000034_05601190_05607136 STAT5B, STAT5A, STAT5, STA5B coding downstream 226234 5601132 ~ 5607169 (-)
CI01000034_05843208_05844043 LRRC3CB coding upstream 8040 5843179 ~ 5844043 (-)
CI01000034_05846112_05848878 TMEM86B coding upstream 9962 5845101 ~ 5848878 (-)
CI01000034_05853721_05866514 GYS1 coding upstream 18582 5853721 ~ 5866514 (-)
CI01000034_05884735_05888543 KRAS.S, HRAS, NRAS, RASH, P-RAS, KRAS coding upstream 48767 5883906 ~ 5888543 (-)
CI01000034_05892022_05899583 SLC17A7, SLC17A7A, SLC17A7B coding upstream 56865 5892004 ~ 5899583 (-)
G172800 NA non-coding downstream 43875 5789032 ~ 5789738 (-)
G172782 NA non-coding downstream 67768 5726381 ~ 5765635 (-)
G172776 NA non-coding downstream 255629 5577443 ~ 5577774 (-)
G172692 NA non-coding downstream 275428 5539885 ~ 5557975 (-)
G172696 NA non-coding downstream 297533 5528899 ~ 5535870 (-)
G172845 NA non-coding upstream 41592 5876731 ~ 5882670 (-)
G172593 NA other downstream 838460 4992960 ~ 4994943 (-)
CI01000034_04216451_04218876 NA other downstream 1615661 4216212 ~ 4221881 (-)
CI01000034_04165535_04172272 KCTD13 other downstream 1661233 4165373 ~ 4172272 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G21554 LOC107690343,LOC107568585,LOC107755099 non-coding NC_056701.1 CM032070.1 19881382 ~ 19910683 (+)
mexican tetra (Astyanax mexicanus) G23813 NA non-coding NC_035899.1 CM008302.1 35418270 ~ 35418753 (-)