XLOC_025199 (cavin1a)


Basic Information

Item Value
gene id XLOC_025199
gene name cavin1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16976095 ~ 17012340 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049757
CTGAGAAGGGAAAGGGAAGACCTGACAGACGGACAGACTTCACAGGGAGCTGtgaacacgcgcacacacacaccttagagagagagagagagagagagagagagagagtctacTTCCACCAACTGGACGGGGTCCTGAAGTAGACTTGAGGGAAAGAGGAAGGGAGGGAAGGTTTGAGGAATTCTAACAAACCTAGAAGGTAGTGGTAGTAAGACGTGATTCAAAGAAGACTTTGTTGCCTGCAAGTTGGAACCATTCTGCTGTCACCGTCGGGTGTCTTCTGTCATTCAGGTCTTTTTTTAGTGCTTTATTTTTACCCTGCGTTCTTGCACACTGGGCCACGTTtgtatgtaggtgtgtgtgtgtgtgtgtgtgcacacttcTACCCTctgcaagcaagcaagcaagcagtGTGTGTTAATTGGAGTCTACTTGAAACCAAGCCATGGCCGACACAGACTTCAAACTGGAGCGTGCCATCTTCGCCGAAGTCTCTGATGACGATGAGGAGGTGGCTTTGGTTACATCTGCAGCCAAACCTGCAACATCCTTGAAGGAGTTCAAATCGAGACGAGGAgacgatgaggatgatgatgatgactcaGAGAAGGAGGTGGATCTGGTGTTGGGTCCAGGGCTGGACGGTGGTGACGCAGAGAAGTCGGATGCTACTGGCATATTGGTGCTGGCGCTTCTAGATAAAATCATCGGTGTGGTGGACAAGATCCAGCAAACGCAGACGAGCCTGGAGGCCAAGCAGGAGGTGATGGAGAAGAACATGAGCAGCATTCAGACGGAGTTGGCCAAGTTGGCCAAGAGTCACGTGGGCACGGCCGGGACGGTCAACAAGCTCCTGGACAAGGTGCGGAAGGTAAACGTCAACGTGAAGAGCGTGCGAGCGGACTTGGAGAAGCAAGTGGGACAGATCAAAAAACTAGAGAACAACGAACAGGAGCTTCTCAAGCGGAAGAACATCAAAGTGCTCATTATACCGGAAAAAGGGAAACCTGTGAAAGTCTCTAAGAAGCCTGCAGGAGAAGAAGGAGAGCAAGTGCTAAGTGAAGGAGGAGAGGAAGAGCATGCCTCTGAAGGAGAAGAAGTGGAGGTCGAGGAGACCATTGAGGAGTCCCGAGCCGAACGCATCAAGCGCAGCGGCCTCCAGAAGGTGGATGAGctgaagaaagccttcagcaagGAGCAGATGCAGAAGACCAGACAGAAAACCAAAGAGAACCTGGAGAAAACCCGAATGAGAACCAAAGAGAACCTGGAGAAGACCCGACAGAGGACCAGAGAGAACCTGGAGAAGACAAAGAAAAGTCTAGGCAAGAAGATGGGGAAGTTCGGAacaaaactgaccccaaacacCGAGCGGAGAGAAAAGATCCGCAGCTCCAGGGAGAAGATGAAGAAGTCACTGAACCCCGACCACACCGTCTATGCCCGCTCCAAATCCACCACCTATCGCGTGCCGCCGTTCACCTTCCACGTTAAGAAGATCCGCGGGGGCGAGGCGGAGCCCACGCCAGAGCCGGAGGAGGAAGATGAGGAGCagaaggaagaggaggaggaaggagATCTCGTGGAAGAAGCTGAACTGGTCAGTCTGGATGGCCCAGAGATGGAGGCGGCAGATCGCTCTAGACTGGCCTTCCAGGAGACGGTGAGGCCTCGAGAGACGGCCGGCCTGTAAGTCGTATATGCTAAGGGAAGAATCTTGTGGAGGAATACGAGGATAAAGGGATACTCTAAGAAATAAATGGACTAAACTGTCACTGAGGCGGTGTACAGTCAGGAAGGTGTAAAGTCAGTGGTGGCAAAAATGATTAGAACACAGCGCATATTTGAAGTGCAGGTCATAGGGATATTATGTGTCCTTATATTGTGTTGAAGTCCAGAAGACTATACAGCTGCAAATGGGTCAGAAAACATTGGGTGTACCCCagggtgtgaattatacattgacgattaACAATTACGATAATGATAGTTTGTGTAATAAATGCgtcagtgaatcaaatttatgtatttattcacctCATTAATAAAACGTATTTAAGTTTGTTAGTGTTTTGTGGAATTTTTGATGCATTCTGAACAACAGTATCCTCTGATTTGTTAtttcagaggttactgtaggtcaaaccaTATAAAAT

Function

symbol description
cavin1a A structural constituent of muscle. Predicted to be involved in termination of RNA polymerase I transcription and transcription initiation from RNA polymerase I promoter. Predicted to be located in membrane. Predicted to be active in caveola and cytoplasm. Is expressed in myotome. Human ortholog(s) of this gene implicated in congenital generalized lipodystrophy type 4. Orthologous to human CAVIN1 (caveolae associated protein 1).

GO:

id name namespace
GO:0006361 transcription initiation from RNA polymerase I promoter biological_process
GO:0006363 termination of RNA polymerase I transcription biological_process
GO:0005901 caveola cellular_component
GO:0005737 cytoplasm cellular_component
GO:0042134 rRNA primary transcript binding molecular_function
GO:0008307 structural constituent of muscle molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-151 A structural constituent of muscle. Predicted to be involved in termination of RNA polymerase I transcription and transcription initiation from RNA polymerase I promoter. Predicted to be located in membrane. Predicted to be active in caveola and cytoplasm. Is expressed in myotome. Human ortholog(s) of this gene implicated in congenital generalized lipodystrophy type 4. Orthologous to human CAVIN1 (caveolae associated protein 1).

Ensembl:

ensembl_id ENSDARG00000076411

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049757 True 2156 mRNA 0.49 2 16976095 17012340

Neighbor

gene id symbol gene type direction distance location
XLOC_025198 atp6v0a1a coding upstream 2970 16922226 ~ 16973125 (+)
XLOC_025197 BX470185.1 coding upstream 92791 16874401 ~ 16883304 (+)
XLOC_025196 stk17al coding upstream 103186 16841942 ~ 16872909 (+)
XLOC_025195 lrrc3cb coding upstream 202021 16771797 ~ 16774074 (+)
XLOC_025194 tmem86b coding upstream 205777 16762483 ~ 16770318 (+)
XLOC_025200 stat3 coding downstream 18325 17030665 ~ 17107445 (+)
XLOC_025201 stat5a coding downstream 239202 17251542 ~ 17331919 (+)
XLOC_025202 si:ch211-210g13.5 coding downstream 334162 17346502 ~ 17523082 (+)
XLOC_025203 CU207238.1 coding downstream 382899 17395239 ~ 17461885 (+)
XLOC_025204 hcrt coding downstream 525012 17537352 ~ 17541448 (+)
XLOC_025429 BX649540.1 misc downstream 13236399 30248739 ~ 30249036 (+)
XLOC_025188 CR388224.1 non-coding upstream 602968 16373012 ~ 16373127 (+)
XLOC_025185 NA non-coding upstream 734755 16186593 ~ 16241340 (+)
XLOC_025184 NA non-coding upstream 814636 16153224 ~ 16161459 (+)
XLOC_025183 CR387933.1 non-coding upstream 920363 16055009 ~ 16055732 (+)
XLOC_025215 NA non-coding downstream 1028273 18040613 ~ 18061783 (+)
XLOC_025218 NA non-coding downstream 1177269 18189609 ~ 18197126 (+)
XLOC_025227 NA non-coding downstream 1658484 18670824 ~ 18672291 (+)
XLOC_025229 AL772362.2 non-coding downstream 1759188 18771528 ~ 18788485 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_05721684_05742044 NA coding CI01000034 null 5721563 ~ 5742044 (-)