Gene
RNA
| Item | Value |
|---|---|
| gene id | XLOC_025204 |
| gene name | hcrt |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007114.7 |
| NCBI id | CM002887.2 |
| chromosome length | 62628489 |
| location | 17537352 ~ 17541448 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| hcrt | Predicted to enable neuropeptide hormone activity; type 1 hypocretin receptor binding activity; and type 2 hypocretin receptor binding activity. Acts upstream of or within several processes, including circadian sleep/wake cycle, wakefulness; multicellular organismal response to stress; and sleep. Predicted to be located in endoplasmic reticulum. Predicted to be active in perinuclear region of cytoplasm. Is expressed in brain; female organism; hypocretin-secreting neurons; male organism; and spinal cord. Human ortholog(s) of this gene implicated in narcolepsy. Orthologous to human HCRT (hypocretin neuropeptide precursor). |
| id | name | namespace |
|---|---|---|
| GO:0051971 | positive regulation of transmission of nerve impulse | biological_process |
| GO:0007218 | neuropeptide signaling pathway | biological_process |
| GO:0030431 | sleep | biological_process |
| GO:0042746 | circadian sleep/wake cycle, wakefulness | biological_process |
| GO:0042755 | eating behavior | biological_process |
| GO:0046928 | regulation of neurotransmitter secretion | biological_process |
| GO:0007631 | feeding behavior | biological_process |
| GO:0042594 | response to starvation | biological_process |
| GO:0033555 | multicellular organismal response to stress | biological_process |
| GO:0001659 | temperature homeostasis | biological_process |
| GO:0048471 | perinuclear region of cytoplasm | cellular_component |
| GO:0031771 | type 1 hypocretin receptor binding | molecular_function |
| GO:0031772 | type 2 hypocretin receptor binding | molecular_function |
| GO:0005184 | neuropeptide hormone activity | molecular_function |
| GO:0042324 | hypocretin receptor binding | molecular_function |
| id | description |
|---|---|
| ko04080 | Neuroactive ligand-receptor interaction |
| id | description |
|---|---|
| ZDB-GENE-040324-1 | Predicted to enable neuropeptide hormone activity; type 1 hypocretin receptor binding activity; and type 2 hypocretin receptor binding activity. Acts upstream of or within several processes, including circadian sleep/wake cycle, wakefulness; multicellular organismal response to stress; and sleep. Predicted to be located in endoplasmic reticulum. Predicted to be active in perinuclear region of cytoplasm. Is expressed in brain; female organism; hypocretin-secreting neurons; male organism; and spinal cord. Human ortholog(s) of this gene implicated in narcolepsy. Orthologous to human HCRT (hypocretin neuropeptide precursor). |
| ensembl_id | ENSDARG00000070932 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00049770 | True | 483 | mRNA | 0.54 | 2 | 17537352 | 17541448 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_025202 | si:ch211-210g13.5 | coding | upstream | 14270 | 17346502 ~ 17523082 (+) |
| XLOC_025203 | CU207238.1 | coding | upstream | 75467 | 17395239 ~ 17461885 (+) |
| XLOC_025201 | stat5a | coding | upstream | 205433 | 17251542 ~ 17331919 (+) |
| XLOC_025200 | stat3 | coding | upstream | 429907 | 17030665 ~ 17107445 (+) |
| XLOC_025199 | cavin1a | coding | upstream | 525012 | 16976095 ~ 17012340 (+) |
| XLOC_025205 | kcnh4a | coding | downstream | 6084 | 17547532 ~ 17604109 (+) |
| XLOC_025206 | rab5c | coding | downstream | 74151 | 17615599 ~ 17651899 (+) |
| XLOC_025207 | kat2a | coding | downstream | 112336 | 17653784 ~ 17680114 (+) |
| XLOC_025208 | dhx58 | coding | downstream | 147971 | 17689419 ~ 17710221 (+) |
| XLOC_025209 | znf385c | coding | downstream | 202891 | 17744339 ~ 17860047 (+) |
| XLOC_025429 | BX649540.1 | misc | downstream | 12707291 | 30248739 ~ 30249036 (+) |
| XLOC_025197 | BX470185.1 | non-coding | upstream | 654048 | 16874401 ~ 16883304 (+) |
| XLOC_025188 | CR388224.1 | non-coding | upstream | 1164225 | 16373012 ~ 16373127 (+) |
| XLOC_025185 | NA | non-coding | upstream | 1296012 | 16186593 ~ 16241340 (+) |
| XLOC_025184 | NA | non-coding | upstream | 1375893 | 16153224 ~ 16161459 (+) |
| XLOC_025215 | NA | non-coding | downstream | 499165 | 18040613 ~ 18061783 (+) |
| XLOC_025218 | NA | non-coding | downstream | 648161 | 18189609 ~ 18197126 (+) |
| XLOC_025227 | NA | non-coding | downstream | 1129376 | 18670824 ~ 18672291 (+) |
| XLOC_025229 | AL772362.2 | non-coding | downstream | 1230080 | 18771528 ~ 18788485 (+) |
| XLOC_025233 | AL772362.1 | non-coding | downstream | 1326387 | 18867835 ~ 18867952 (+) |
