XLOC_025191 (slc17a7a)


Basic Information

Item Value
gene id XLOC_025191
gene name slc17a7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 16612574 ~ 16654088 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00049742
ACACCGGTCGGACTCGAAAGTCGCGAGGATGGAGATCCGTCCGGACCGCTTTAAAGCCCAGGCAGGGAAAACTTTGGGGAAAATACACAGACTCCTGGAGAAGCGGCAGCAGAATGGAGAGACGATCGAGCTGTCAGCTGAGGGACGTCCCGAGCTGGTGGAGGAGAAGGAGCTTCCCATCGTGGACTGCACGTGTTTTGGTTTGCCTCGCCGCTACATCATCGCCATCCTGTCCGGCCTGGGCTTCTGCATCTCTTTCGGCATCCGCTGTAACCTGGGTGTAGCCATCGTCAGCATGGTGAACGACCACACGGTTTACTCCGGAAAGAAGCCCGTCATAGTGGCCGCTCAGTTCACATGGGACCCTGAGACGGTGGGTATGATTCACGGCTCATTCTTCTGGGGTTACATTGTCACGCAAATCCCCGGAGGATTCATCTGTCAAAAGTTTGCAGCTAACAGggTGTTTGGCTTTGCTATTGTGGCCACGTCCACACTGAATATGCTGATCCCATCGGCAGCTCGAGTACACTACGGGTGTGTGATCATGGTCAGGGTCTGCCAGGGACTTGTGGAGGGGGTGTCGTACCCAGCGTGTCATGGGATCTGGGCCAAATGGGCTCCACCGCTTGAAAGAAGCCGACTGGCAACAACAGCATTCTGTGGTTCATATGCGGGAGCTGTTGTTGCAATGCCTTTGGCTGGAGTCTTAGTGCAGTACACTGGGTGGTCTTCGGTGTTTTATGTATAtgGAAGTGTTGGGATCTTCTGGTATCTCTTCTGGATTTTAGTGTCCTATGAGAGTCCAGCTGCTCACCCGACAATTACACCAGAGGAGAGGAAGTACATTGAGGACGCCATCGGGGAAAGCGCTGGCCTGGTCAACCCCCTGCAGAAATTTAAAACCCCCTGGCGGCATTTCTTTACCTCCATGCCAGTGTATGCCATCATCGTAGCCAACTTCTGCAGAAGCTGGACCTTCTACCTGCTCCTCATCAGCCAGCCCGCTTATTTCGAGGAGGTGTTCGGCTTTGAAATAAGCAAGGTGGGGATGGTGTCTGCTCTTCCTCATTTAGTGATGACCATCATTGTGCCAATCGGAGGACAACTGGCCGATTACCTGAGGACACACAATTTAATGACCACAACAAACGTCCGTAAACTCATGAACTGTGGAGggTTTGGAATGGAAGCCACACTTCTCTTGGTTGTTGGTTTCTCTCATACCAAAGGAGTAGCCATTTCTTTTCTTGTGCTGGCTGTGGGCTTCAGTGGATTTGCAATTTCAGGGTTTAATGTGAACCATCTTGACATCGCACCACGCTACGCCAGTATCCTGATGGGAATTTCCAATGGAGTGGGAACTTTGTCAGGAATGGTGTGTCCGCTCATAGTTGGAGCCATGACCAAACACAAGACACGTGAGGAGTGGCAGTATGTTTTCCTCATTGCAGCCCTGGTGCATTATGGGGGTGTGATTTTTTATGGGCTCTTCGCATCAGGTGAGAAGCAGCCATGGGCGGATGCCGAAAACACCAGTGAGGAGAAGTGTGGCATTCTGGGAGAGGACGAACTGGCCAATGAAACGGAGGAACTGTACAGGACTGGAGGACAGTATGGAGCTATAAACAATCCGCATGTCGGCGGTCCTAATGGGGGCGGAGCTGGTGCTGGGGCGGGATGGGTGTCAGATTGGGATAAAACAGAAGAATATGTTCAACCGGTTGGGACAAATAGCTATTTATATGggggagagggagaaagagagctCACAtagtggaaatatatatatatatgaatctaAATTAAGGAGAAGAAAA

Function

symbol description
slc17a7a Predicted to enable L-glutamate transmembrane transporter activity and neurotransmitter transmembrane transporter activity. Predicted to be involved in several processes, including glutamatergic synaptic transmission; neurotransmitter loading into synaptic vesicle; and regulation of synapse structure or activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in excitatory synapse. Predicted to be integral component of synaptic vesicle membrane. Is expressed in nervous system and otic vesicle. Orthologous to human SLC17A7 (solute carrier family 17 member 7).

GO:

id name namespace
GO:0035249 synaptic transmission, glutamatergic biological_process
GO:0055085 transmembrane transport biological_process
GO:0098700 neurotransmitter loading into synaptic vesicle biological_process
GO:0050803 regulation of synapse structure or activity biological_process
GO:0006820 anion transport biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0060076 excitatory synapse cellular_component
GO:0030285 integral component of synaptic vesicle membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022857 transmembrane transporter activity molecular_function
GO:0005313 L-glutamate transmembrane transporter activity molecular_function
GO:0005326 neurotransmitter transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050105-5 Predicted to enable L-glutamate transmembrane transporter activity and neurotransmitter transmembrane transporter activity. Predicted to be involved in several processes, including glutamatergic synaptic transmission; neurotransmitter loading into synaptic vesicle; and regulation of synapse structure or activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in excitatory synapse. Predicted to be integral component of synaptic vesicle membrane. Is expressed in nervous system and otic vesicle. Orthologous to human SLC17A7 (solute carrier family 17 member 7).

Ensembl:

ensembl_id ENSDARG00000016480

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00049742 True 1820 mRNA 0.51 13 16612574 16654088

Neighbor

gene id symbol gene type direction distance location
XLOC_025190 slc6a16a coding upstream 20926 16566361 ~ 16591648 (+)
XLOC_025189 kcnj12b coding upstream 154556 16449490 ~ 16458018 (+)
XLOC_025188 CR388224.1 coding upstream 239447 16373012 ~ 16373127 (+)
XLOC_025187 st8sia6 coding upstream 327315 16265924 ~ 16285259 (+)
XLOC_025185 NA coding upstream 371234 16186593 ~ 16241340 (+)
XLOC_025192 zgc:55558 coding downstream 8121 16662209 ~ 16683623 (+)
XLOC_025193 gys1 coding downstream 67926 16722014 ~ 16750036 (+)
XLOC_025194 tmem86b coding downstream 108395 16762483 ~ 16770318 (+)
XLOC_025195 lrrc3cb coding downstream 117709 16771797 ~ 16774074 (+)
XLOC_025196 stk17al coding downstream 187854 16841942 ~ 16872909 (+)
XLOC_025429 BX649540.1 misc downstream 13594651 30248739 ~ 30249036 (+)
XLOC_025184 NA non-coding upstream 451115 16153224 ~ 16161459 (+)
XLOC_025183 CR387933.1 non-coding upstream 556842 16055009 ~ 16055732 (+)
XLOC_025180 NA non-coding upstream 746172 15865921 ~ 15866402 (+)
XLOC_025197 BX470185.1 non-coding downstream 220313 16874401 ~ 16883304 (+)
XLOC_025203 CU207238.1 non-coding downstream 741151 17395239 ~ 17461885 (+)
XLOC_025215 NA non-coding downstream 1386525 18040613 ~ 18061783 (+)
XLOC_025218 NA non-coding downstream 1535521 18189609 ~ 18197126 (+)
XLOC_025227 NA non-coding downstream 2016736 18670824 ~ 18672291 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000034_05892022_05899583 SLC17A7, SLC17A7A, SLC17A7B coding CI01000034 null 5892004 ~ 5899583 (-)