CI01000189_00537167_00546397


Basic Information

Item Value
gene id CI01000189_00537167_00546397
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000189
NCBI id null
chromosome length 4726117
location 537167 ~ 547307 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000189_00537167_00546397.mRNA
ACAGCCTGGTGTAACTGTCCTAAGGGCCTGAGTGCACAAAAACAGAAATACATCGGTCTTGCACTAATGTGTCAGAGGGCTCTCATGGTACAACAGAACGAGAGTTTCAGCTACTTACGCTATCCAGACAATTACATGATGGAATCTTGGTCTTACGAGGACGACAAGACCAAACCCAGACTGTCTTCGGATGAAGACCTCGCTATAGAACTCTTCTATGATCCCTGCAAGCCCTCAAAAGAGCCGATGATGACATGTACCCGTGGTAGCAGCATGTACAAATCCAGAGAGGAGAGGACACCAAACAGCTCTTCCCCTGAGCTGGCCACACTGGAGAACGCTCAGATCATGAAAATTATTTCTGACAATATTAACTTCAGCCACGTAAAGCAACCATTACCAGGCTCTGACCCAGTCAACATCAACAGCATCTTGGAGTCCCTCCTTCCCCAACCGCCACAGAAATCATGGCCATCTCACCAAAACTTTCTGGAGGTCACCCCTGAGCCTCTTGGCAACAGCAATGCGTTTGTGGGACAGACAAGCCCTGTATACTCCTACCCCAACTCTTCTCCAGAGAGATACAGGAATGACTTCCAATTCGTTCTTGGCGCCCCACAAGCTTCCCAGCACAAGACAACAGAAATACCCATGGTGTACCTCAACAAGGGGCAGTTTTACCCCATCACGCTGCAGGGAGTGGACAGCACTGCTGGGGTTTCATGCAGCAAAGTAAAAACGGTGATCATGGCTGTGTTTGAGAATGACAAGAGTCCTGAGATGCAGCTGAAGTACTGGAACCACTGGCACGCTCGACAGCCTACCGTCAAACAGAGAGTCATTGATATCGCTGACTACAAGGAAGTTTTCAGCGGAGTGAGTAACTTGGAAGAGGTTGCTTTCAACGCACTGTCCTTTATCTGGAACACCAATGAAGAAGCAAAGGTGCACATTGGCATCAATTCTCTGAGCACTGACTTCTCCTCGCAGAAAGGGGTCAAAGGTCTTCCTCTGAATCTTCAGATCGACACCTATGATTTCAGCTCAGGGAACAACCGTCTCATTCACAGAGCTGTTTGTCAGGTCAAGATCTTCTGCGATAAGGGAGCTGAGAGGAAGATGAGAGATGAAGAGAGGAAGAGAAGCAAGAGGAGGACCAAGAATGTTTCAGACTCCAGCAACAATGGTGAATGCCGTTGCAAACAAGCCCTAGTCTCCAGCTCTGTCGGAAGGGATTCTACCTACTTTAAAACTATAGAAGATCACGTCACGCAACCTGTTTTATTCATCCCAGAGATGCACTTCAGCACTATGCAGCGCTGTGGCCTGGTGCCCCCTGTTAGCATGGAGGAAATCGATAAGACATCACGGAAGCGTATCAACAGCTACGCAGACGGCGGCGACCAGAGCAGCTCCCCTCCGAGCAAACAAGCCCGCCGAGACGAGCAACAGAGAGTTCTACTGTACGTCAGACGAGAGACCGAGGAAGTATTTGACGCCCTCATGTTGAACACGCCAACCCTCAAGGGCCTGAGAGAAGCGATTTCAGAAAAGTACGGTATGCAAGAAGACACCATTGGGAAAATCTTCAAGAAGTGCAAAAGAGGGATTTTTGTGAACATGGATGACAACATCATCGAGCATTACAGCAACCACTCTGCCTTCCTCATTGAGATCACTGAAGTTATGATCAGCCACTTCCAGATCACACTAATGGAGTTATAAAAGGCATCATTGACTAGTGACGCCACACCTGGTGCTGCTGGCAGCTTCTCTCTGCCCTCTCGAACAAAAAGCACAACTGTGAGCCAGATTCTGCTGTGCCAGAACTGTCGCTATGGAAACAAAAGAGCTCACCTGCCAGTTATATCATTTTCAGTTTCAACAGACATATCAATATTGACCAGTGTAAATACAAGTTACCTCTTTTGTACCTTTTTTATTATTTTATCTACAACTATTTTATAACATGAGCAATTATGATCAACAAGGTACATTGTAAATATTAATTGTGAATAGACATAATTATCATAATGTTGTGTGTTGACATGATTTTTAAAAAGATATATGTTATTATTTCAATGATAAACTTGCCTTTTTAACGCTGCCTCTTTGCTGCTTATGATAGGCCCATCATTTCTAGGAAAGGATGCGAGGCGTTTGTATCGCTTTATGGTTTGCATGTTTATTAATCTTGCCGCGTGTTACTTAAGCATACTTCCAGTCAGGGTGCTGTAACTGTCAGCCTTTTAGTTTCACATCTGATACGCTCCACAAACACACATGAGTGTTTTAGACCTTTAAGTCGCACATTTCCCCCTTTTAAAGAGCTGTGTATCTGTCAGTGTTTCGATCATCTTTTTGAAAACTGGCTCCACACATTTCGAATCTTGTGTGGCTGTAATGGTTGTCAGGACAACCGGCCATTTGTCCTCCAACATTTAAACATGAAAGTTCGGATGAACCACTGCAATATCGAACTTGCCCAAATATCAGATTAAATCATGCTGACTTCATTTTGTGCATTTTGCTTCACAAAACTTGTACATTTCAAATGCTTTGTATTGCTGTCAAACAATATTGATATACTAAAGCTGTGTTTCCTTTTTTTACTGCCTTTGCTTTTGTAAGGAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000189_00537167_00546397.mRNA True 2635 mRNA 0.45 15 537167 547307

Neighbor

gene id symbol gene type direction distance location
CI01000189_00448469_00457564 JADE1 coding upstream 78982 448469 ~ 458185 (+)
CI01000189_00438982_00445216 ASMT2 coding upstream 91522 438982 ~ 445645 (+)
CI01000189_00322834_00332685 MOCS1 coding upstream 204417 322834 ~ 332750 (+)
CI01000189_00297654_00300990 FOSL2 coding upstream 235709 297654 ~ 301458 (+)
CI01000189_00183881_00277704 BRE, BRE.L coding upstream 259463 183881 ~ 277704 (+)
CI01000189_00552262_00553370 NA coding downstream 3526 550833 ~ 553486 (+)
CI01000189_00613239_00646678 NA coding downstream 64292 611599 ~ 646948 (+)
CI01000189_00671005_00685458 RPS6KA1, RPS6KA2 coding downstream 123698 671005 ~ 686271 (+)
CI01000189_00693840_00694391 TRNP1 coding downstream 146394 693701 ~ 695967 (+)
CI01000189_00877464_00886363 VGLL2B coding downstream 330157 877464 ~ 886915 (+)
G379599 NA non-coding upstream 63143 473810 ~ 474024 (+)
G379592 NA non-coding upstream 76736 459307 ~ 460431 (+)
G379561 NA non-coding upstream 121119 415750 ~ 416048 (+)
G379560 NA non-coding upstream 122676 414240 ~ 414491 (+)
G379558 NA non-coding upstream 128406 408557 ~ 408761 (+)
G379627 NA non-coding downstream 31078 578385 ~ 579319 (+)
G379582 NA non-coding downstream 69285 616592 ~ 617478 (+)
G379570 NA non-coding downstream 213239 760546 ~ 764103 (+)
G379695 NA non-coding downstream 247882 795189 ~ 795509 (+)
G379700 NA non-coding downstream 295080 842387 ~ 852067 (+)
G379600 NA other upstream 40259 475615 ~ 496908 (+)
G379799 NA other downstream 465239 1012546 ~ 1012903 (+)
CI01000189_00987665_01058757 PACRG other downstream 468724 987525 ~ 1059385 (+)
G381120 NA other downstream 2291914 2839221 ~ 2841125 (+)
G381491 NA other downstream 3078429 3625736 ~ 3626855 (+)
G381655 NA other downstream 3573080 4120387 ~ 4122344 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location