XLOC_000120


Basic Information

Item Value
gene id XLOC_000120
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9886955 ~ 9914630 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000220
GCAGACTCCGAGCAGCAGCACAAACAAACCCGTCCAGCTCTCTTCAACTTTACATCCACAGCAGCAGAAAACATGACCATCAACACACTCAGCCAGGATGGCGTGCAGAGACAGCAAATGCCCTGTTTGACCAAGATGGAGCGCATGATCATTTCTATGCAGGACCCCGATATGGGCATCAAGCTGCGCAACCAGCGTCTGCTTATTACAGTCATCCCACATGCAATGACCGGTGCAGACATTGTTGAATGGCTGATTAAGAAGTTAACTATTTCTGATGAAGAAGCAGCGCACATTGGACAGTTTCTCGTGAAGTATGGCTACATTTACCCTTTAAAAGAACCCAGAAACCTTATTCTGAAAGCTGACGAATCAGCATATCGTTTTCAGACACCGTATTACTGGATGTCTACACGCTGGCCTGCTTCAGAACTAGACTATGCAATCTACCTGGCCAAGAAGAATATCAGAAAACAAGGAGAATTAATCGAGTATGAAAAGGAGTGCTATAATGCTTTACATAAACGTATCAACCACACCTGGGACTTTGTTGTGATGCAGGCAAGAGAGCAGCTCAGGGCATCAAAACAGCGTCGGAAGGCAGATCGTATAGTGCTGGAGTGTCAGGAACAAGCGTTCTGGCTAGTGAACAGACCTCCTCCGGGGACACTGGATATTATGAATTATGGGCCCGAGAGAAGAACAATGAACACACGCGTGCAGCTGAATGCAGAATTCTACAAAAAAGAGATTGAACACAACAGGATGAGCCTGGCGAGGAATCGTGTCAAGTCCTCAATCTGCCTTGAGAGctATGTGAAGTACTGTGAGCAGTACCAGCCTCATGACCCCATAATGCAAGGGTGTCTTCCCAGCAATCCCTGGATTACAGATGATGTGCTGTTTTGGAACATGAACTCTGAAGCGGTTACTGTTCCCACTAAACTGCGTGTGGAGCGCTGGAGCTTCAGCTTCACGGAGCTGCTGGACGACCCGATGGGCAGAAAAGAGTTCCTCATTTATCTGGAGAAAGAGTTCAGCGCGGAGAACTTGTGCTTTTGGCAGGCCTGTGAGGACGTTCGTCATGGAGAGAGCTCCAAAATTCCCGAGAAAGTGGACGAGGTTTACAAGATTCGTTCCCTCGCTATTTGAAATCTGATCTCTACAAGAGCTTATTGGCCAGAGCCATTGTGCCACAGGAGACCAAGAAAAGtgtGTTCCCGTTCATGCGTCGGCAGCGCCACTCCAGCCCCTCGCCTGCTCTCGTCACCCATACCACAGAGGATGATGGGAAGGCAAAAAACTCAAACTCTGTCAAAAGCAATTCTGGAACCGCGTCCAGGCTGTAACACAAAATATTTGCTTGTGCTTAAAACACTTGAATTTATTTTCTGCCGTATGTTGTTACCTAACACACTTGGGAAAGGAAACTACACTGTTTCCTTTTGTGCTCCACAAAGCAGATATTTTAGCCTCTAGGttactgtttaaaaataattctCATCATATCAGGCTTGCATTTTAAAGATACAGCAATAATGCCATTCAACATAATCACAATCACATACAGTAAACGTTCAGCTCTTCTATGAATGTGTAACTCAAATCTTTCGCACATTTGTCATGTTTTTAACGTGTTTATTTGATATTAAATGTTCTTTGTGTTATACATTTACTGTTGCCTCCGTTTACATAAATCAACATGatgtcttttaaaataaatgtgtacatttggaa
>TCONS_00000219
GCTCTCTTCAACTTTACATCCACAGCAGCAGAAAACATGACCATCAACACACTCAGCCAGGATGGCGTGCAGAGACAGCAAATGCCCTGTTTGACCAAGATGGAGCGCATGATCATTTCTATGCAGGACCCCGATATGGGCATCAAGCTGCGCAACCAGCGTCTGCTTATTACAGTCATCCCACATGCAATGACCGGTGCAGACATTGTTGAATGGCTGATTAAGAAGTTAACTATTTCTGATGAAGAAGCAGCGCACATTGGACAGTTTCTCGTGAAGTATGGCTACATTTACCCTTTAAAAGAACCCAGAAACCTTATTCTGAAAGCTGACGAATCAGCATATCGTTTTCAGACACCGTATTACTGGATGTCTACACGCTGGCCTGCTTCAGAACTAGACTATGCAATCTACCTGGCCAAGAAGAATATCAGAAAACAAGGAGAATTAATCGAGTATGAAAAGGAGTGCTATAATGCTTTACATAAACGTATCAACCACACCTGGGACTTTGTTGTGATGCAGGCAAGAGAGCAGCTCAGGGCATCAAAACAGCGTCGGAAGGCAGATCGTATAGTGCTGGAGTGTCAGGAACAAGCGTTCTGGCTAGTGAACAGACCTCCTCCGGGGACACTGGATATTATGAATTATGGGCCCGAGAGAAGAACAATGAACACACGCGTGCAGCTGAATGCAGAATTCTACAAAAAAGAGATTGAACACAACAGGATGAGCCTGGCGAGGAATCGTGTCAAGTCCTCAATCTGCCTTGAGAGctATGTGAAGTACTGTGAGCAGTACCAGCCTCATGACCCCATAATGCAAGGGTGTCTTCCCAGCAATCCCTGGATTACAGATGATGTGCTGTTTTGGAACATGAACTCTGAAGCGGTTACTGTTCCCACTAAACTGCGTGTGGAGCGCTGGAGCTTCAGCTTCACGGAGCTGCTGGACGACCCGATGGGCAGAAAAGAGTTCCTCATTTATCTGGAGAAAGAGTTCAGCGCGGAGAACTTGTGCTTTTGGCAGGCCTGTGAGGACGTTCGTCATGGAGAGAGCTCCAAAATTCCCGAGAAAGTGGACGAGGTTTACAAGCAGTTTCTGGCTCCTGGTGCAAGTCGCTGGGTGAATATCGACAGCAAGACCATGGAAAAAACCTTGGAAGGGCTCAAGCGTCCTCATCGTTTTGTTTTGGATGATGCTCAAATGCATATTTACTTCCTCATGAAAAAGGATTCGTTCCCTCGCTATTTGAAATCTGATCTCTACAAGAGCTTATTGGCCAGAGCCATTGTGCCACAGGAGACCAAGAAAAGtgtGTTCCCGTTCATGCGTCGGCAGCGCCACTCCAGCCCCTCGCCTGCTCTCGTCACCCATACCACAGAGGATGATGGGAAGGCAAAAAACTCAAACTCTGTCAAAAGCAATTCTGGAACCGCGTCCAGGCTG

Function

GO:

id name namespace
GO:0022401 negative adaptation of signaling pathway biological_process
GO:0099643 signal release from synapse biological_process
GO:0006898 receptor-mediated endocytosis biological_process
GO:0050877 nervous system process biological_process
GO:0048167 regulation of synaptic plasticity biological_process
GO:0045744 negative regulation of G protein-coupled receptor signaling pathway biological_process
GO:0048489 synaptic vesicle transport biological_process
GO:0043010 camera-type eye development biological_process
GO:0002029 desensitization of G protein-coupled receptor signaling pathway biological_process
GO:0002031 G protein-coupled receptor internalization biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0051234 establishment of localization biological_process
GO:0099177 regulation of trans-synaptic signaling biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0031623 receptor internalization biological_process
GO:0043112 receptor metabolic process biological_process
GO:0048880 sensory system development biological_process
GO:0008277 regulation of G protein-coupled receptor signaling pathway biological_process
GO:0009416 response to light stimulus biological_process
GO:0023058 adaptation of signaling pathway biological_process
GO:0023061 signal release biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0097479 synaptic vesicle localization biological_process
GO:0097480 establishment of synaptic vesicle localization biological_process
GO:0003008 system process biological_process
GO:0006810 transport biological_process
GO:0050804 modulation of chemical synaptic transmission biological_process
GO:0050806 positive regulation of synaptic transmission biological_process
GO:0001654 eye development biological_process
GO:0060291 long-term synaptic potentiation biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0007423 sensory organ development biological_process
GO:0150063 visual system development biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0030133 transport vesicle cellular_component
GO:0042995 cell projection cellular_component
GO:0043005 neuron projection cellular_component
GO:0030424 axon cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:0012506 vesicle membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0043679 axon terminus cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0070382 exocytic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0044306 neuron projection terminus cellular_component
GO:0043195 terminal bouton cellular_component
GO:0098793 presynapse cellular_component
GO:0030658 transport vesicle membrane cellular_component
GO:0030659 cytoplasmic vesicle membrane cellular_component
GO:0098797 plasma membrane protein complex cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0005212 structural constituent of eye lens molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-080220-46 Predicted to act upstream of or within G protein-coupled receptor signaling pathway; intracellular signal transduction; and negative regulation of signal transduction. Orthologous to human RGS11 (regulator of G protein signaling 11).

Ensembl:

ensembl_id ENSDARG00000037646

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000220 False 1737 lncRNA 0.45 16 9886955 9914630
TCONS_00000219 True 1449 mRNA 0.48 17 9886991 9914239

Neighbor

gene id symbol gene type direction distance location
XLOC_000119 pmm2 coding upstream 20099 9860381 ~ 9866856 (+)
XLOC_000118 elfn1b coding upstream 174653 9557212 ~ 9712302 (+)
XLOC_000117 uncx4.1 coding upstream 592840 9290103 ~ 9294115 (+)
XLOC_000116 BX323038.1 coding upstream 601604 9277846 ~ 9285351 (+)
XLOC_000114 chtf18 coding upstream 659751 9199031 ~ 9227204 (+)
XLOC_000121 NA coding downstream 32034 9946664 ~ 9951873 (+)
XLOC_000122 pdia2 coding downstream 39859 9954489 ~ 9966195 (+)
XLOC_000123 si:dkeyp-75b4.8 coding downstream 51754 9966384 ~ 9982114 (+)
XLOC_000124 si:dkeyp-75b4.10 coding downstream 80181 9994811 ~ 10000376 (+)
XLOC_000125 trim2b coding downstream 88563 10003193 ~ 10033113 (+)
XLOC_000111 NA non-coding upstream 754465 9129386 ~ 9132490 (+)
XLOC_000106 NA non-coding upstream 910533 8967479 ~ 8976422 (+)
XLOC_000105 NA non-coding upstream 921016 8950874 ~ 8965939 (+)
XLOC_000100 NA non-coding upstream 1296319 8587230 ~ 8590636 (+)
XLOC_000133 AL935188.1 non-coding downstream 449090 10363720 ~ 10363851 (+)
XLOC_000135 NA non-coding downstream 547414 10462044 ~ 10462882 (+)
XLOC_000136 NA non-coding downstream 702894 10617524 ~ 10617930 (+)
XLOC_000137 NA non-coding downstream 730634 10645264 ~ 10668028 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000300_01241607_01253459 RGS11 coding CI01000300 null 1241607 ~ 1254009 (+)