XLOC_012016 (nrxn3a)


Basic Information

Item Value
gene id XLOC_012016
gene name nrxn3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 17257310 ~ 17447902 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00023718
GCAGGGGAACATTTTGTTTTTCACCGAATGCAACATCATTAAAATGTCCCCTCTTTGACTGCTTGCTTTATGCAATCTTAGCATCTTAGCAGCAGTTCTTTTTGATTCCTGTAGAATTAGTACATGTTCATTCACCACAGCTGTAACCTTGAACACTGGGAGGACCAGTCAAACGGATTTATTGAAGTCCTAGCACTACATGCCAAGAGGACTCCTGCGCCAACATGGGGATCTGCATCCAGCAATGGGAGAACTACACCTGCGACTGTTCAATGACTTCCTACACCGGGACACACTGTAATGACCGTAAGTCACTCTCCGTCTCGTGCCTTTCGCACATCCACTCActttttacttgttatttttttatttgttttgtttacacagCTTTAAAAGACTCACTCTGAAAGATTAATTGAGCATACTTTAatgtactg
>TCONS_00023719
GAGCGCGCGGCTCTCTGTAACTGCAAGCGAGCACAGAAAGAGGCAAGTGCACGCGGGTAAAACATCATCACAAGACCGCGAAAAACGTTATTTTAGTGGCGTGGACCAAACACACGGAGCCTGTTGGGAATGTAATGTGGATTATTGCGCTTTGGGATATTTTTACGAAAATTGAGCTATTGTGCGCTAGATGAGGCAGAGTAACCACATGGACTACATTACCCACATGGCATCATGCAGACTGTGCTGGTTTccttaaatacaaaaaaagtccGACCTGGAGGACCTGTCTGGATGATTGAGGTCTGAGGAGATACTAGAAGAAAACAACACCTCAGCAGACACACAGAACCTCATCTGCTAGTCTTCTCAAGTCGATTCATTCCAGGAAGCGAGCAAGAAGAACCTGATTGTCGCCTGAAAGAGATTGGATTGTTGTGCAATGTCATTGGCCTTATGACTGTTATTTAAGACTGTTCTCCTTATTAAGTCCCTCTCCTCTTTTAGGATACTTTTTTTTTCCGTTTCACGCTGCGTTGACGATCTCACCTCTTCTCTAGTATCTCTGGGCATATCGTGGGATGTACTTTGGATTTACTGACCTTTGAACCAAAGCGAATTCAATGATTTCCTTCTGTTCAGGATAATAACCCCAAATCTCCAGCACTTTTACAATGAATTTCTTCAGATTTCCAGTCCAGTTGCAGCTGCTGATCAGTACTGTGCTTGGGCCCTGCTTGGGCCTGGAGTTTACAGGGTTGCAAGGCCAGTGGGCACGCTATCTCCGCTGGGACGCCAGCACCAGAAGTGACCTCAGCTTCCAGTTCAAAACAGACGTGTCCACTGCCTTAATCCTGTACTTTGACGATGGCGGCTTCTGCGACTTCCTGCAACTCATGGTGGTTGAGGGGAAGCTCCAATTGCAGTTTAGCATTGACTGCGCCGAGACCACTGTTGTATCGGACAAGCGAGTCAATGACAGCAGCTGGCATTCTGCCACCCTGAGCAGGTACAACCTGAGAACTGTGCTGGGTCTGGATGGAGTGAGCAAATGGGCCGAAGTGCGGCCACTGAGGCAGTACATGAAGATCGTTAGTGACCTCTTCCTGGGCGGAGTCCCTCAAGATATTCGCATTTCTGTGCTCACTCTCCCGACAGTGAAGGATCTTCCGCCGTTTAAGGGAATTATCAGGGAACTGAAGTACAATAGCAAGGAACCTATTCTACTTAGCAGCCAGAGGGTCCGCATGGACATCGAGGGGATCTGCATGGAGAACCCATGCGAAAACGGAGGGACGTGCTCTGTTGTAGATGGGGAACCACTTTGTGATTGTTCTAAGACGGAATATGTTGGCCGATTCTGCAACGAAGAGGCCAACAACATCCCAGGTTTTGCACACATGATGATGGCGGATCAAGCCAAGGGCAAAGCACGAGAAGAGAATGTGGCCACTTTCCGAGGCTCGGAGTTCTTCTGCTACGACTTATCTCAGAATCCCATCCAGAGCAGCAGTGATGAGATCACGTTGTCCTTCAAGACCTGGCAAAGAAATGGGCTTATCCTCCACACGGGCAAATCAGCGGACTACGTCAACCTGGCCTTGAAAGATGGGGCTGTTTCATTGGTCATCAACTTGGGTTCCGGAGCCTTCGAGGCCATTGTCGAACCTGTCAATGGCAAATTCAATGACAACTCTTGGCATGATGTGAAGGTCACGCGCAACCTCAGACAGCATTCAGGTATTGGACACGCTATGGTAAACAAACTACATTGTCTGGTGACGATATCTGTGGATGGCATCCTGACCACGACAGGCTACACGCAGGAAGACTATACAATGCTGGGATCAGATGACTTTTTCTATGTCGGTGGATCTCCGAGTACAGCAGACTTACCTGGGTCGCCCGTCAGCAACAACTTTATGGGTTGCCTGAAAGAGGTTGTTTACAAAAACAATGACATCCGGCTGGAGCTGTCCCGGCTCGCCCGCATTGTGGACCCCAAGATGAAGATCCAGGGCGATGTGGTGTTCAAGTGTGAAAACGTGGCAACGCTGGATCCGATTTCGTTCGAGACGCCTGAGGCCTACATCAGCCTGCCTAAGTGGAACACCAAACGCATGGGCTCCATCTCTTTTGACTTCCGCACCACCGAACCCAACGGCCTTATTCTCTTCACCCACGGCAAGCCACAGGAGAGAAAGGACGCCCGCAGCCAGAAGAACACAAAAGTGGACTTCTTTGCCGTGGAGCTGCTGGATGGAAGTCTGTACTTGCTGCTGGATATGGGCTCTGGGACAATCAAAGTGAAAGCCACACAGAACAAGGTGAACGACGGGGCCTGGTACCATGTGGACATCCAGAGAGATGGAAGATCAGGCACCATATCAGTAAACAGCCGCCGCACTCCTTTCACTGCCAGTGGGGAAAATGAGATTCTGGACCTGGAGGGTGACATGTACTTAGGCGGCCTTCCTGACAGCCGGGGTAGTCTCATCCTGCCCACCGAACTGTGGACCGCCATGTTGAACTACGGCTATGTGGGCTGCATTCGGGACCTGTTCATTGATGGTCGCAGTAAAGACATCCGGCAGATCGCTGAGGCCCAGAACGGAGCAGGCATCAAACCATCCTGCAACAAGATGTCAGGCAAACAGTGCGACAGTTACCCATGCAAAAACAAAGGCTTGTGCAAAGAAGGCTGGAATCGGTTTATCTGTGACTGCACAGGCACTGGTTACTGGTCCCGCACCTGCGAGAGGGAGGCGTCCATCTTGAGCTACGATGGCAGCATGTATATGAAAGTGGTGATGCCGACCGTTATGCACACTGAAGCGGAGGACGTTTCTCTGCGCTTCATGTCTCAGCGGGCATACGGCCTGCTCATGGCCACCACGTCACGCGACTCCGCCGATACGCTTCGGCTAGAGCTGGACGGCAGTCGCGTCAAACTCACGGTCAACTTAGACTGTATCAGGATAAACTGTAACTCCAGCAAAGGACCAGAGACACTGTATGCCGGACAAAAACTCAATGATAATGAATGGCATACTGTGCGCGTGATCCGGAGGGGCAAAAGCTACAAGCTAACGGTTGACGATGACGTAGCAGAAGGTCAGATGGTGGGCGATCACACCCGGTTAGAGTTCCACAACATCGAGACTGGTGTGATGACTGAGCGCCGCTTCGTCTCCATGATCCCCTCCAGCTTCATCGGTCACCTGCAGAGCCTGAAGTTCAACGGCCTGCTGTACATCGACCTGTGCAAGAACGGTGACATCGACTTCTGCGAACTCAACGCTCGCTTTGGCATGCGCTCCATCATCGCAGACCCTGTGACGTTCAAGTCAAAGAACAGTTACTTGAGTCTTGCCACCTTGCAGGCTTATACCTCCATGCACCTTTTCTTCCAGTTCAAGACGACCTCTGCGGATGGATTCATCCTCTTCAACAGCGGGGACGGAAGTGATTTCATCGCTGTGGAGCTGGTGAAAGGGTATATACATTATGTGTTTAATCTCGGCAACGGGCCCAATGTAATCAAAGGCAACAGTGAACGAGCTCTCCATGACAACCAGTGGCATAATGTTGTCATCACAAGAGACAACAGTAACGTCCACACACTCAAAGTCGATGCCAAGGCAGTGAGTCAGGTCGTCAATGGCGCTAAAAATCTGGACCTTAAAGGTGACCTCTTCATTGCCGGATTGGGGCCCAACATGTACAACAACCTTCCGAAGCTCGTGGCCTCCAGAGAGGGCTTTAAAGGCTGCCTGGCATCCGTAGACCTGAACGGACGCCTTCCTGACCTCATAAACGACGCCCTGTTCCGCAGCGGCCAGATCGAGCGAGGATGCGAAGTTGGTTTCACCAAAGCAGATCTAAAAGGTCCTAGCACTACATGCCAAGAGGACTCCTGCGCCAACATGGGGATCTGCATCCAGCAATGGGAGAACTACACCTGCGACTGTTCAATGACTTCCTACACCGGGACACACTGTAATGACC
>TCONS_00023720
CACTCAAAGTCGATGCCAAGGCAGTGAGTCAGGTCGTCAATGGCGCTAAAAATCTGGACCTTAAAGGTGACCTCTTCATTGCCGGATTGGGGCCCAACATGTACAACAACCTTCCGAAGCTCGTGGCCTCCAGAGAGGGCTTTAAAGGCTGCCTGGCATCCGTAGACCTGAACGGACGCCTTCCTGACCTCATAAACGACGCCCTGTTCCGCAGCGGCCAGATCGAGCGAGGATGCGAAGGTACACCCTCTAACAACTCGAGCTCCAGGAGCCCGTTCTTTCTCATGAATGCAAACAGTAGTTCCAACTCCACCTCCACCTCACTGCACCATCACTCCATCTTTCTCACCCTGCTCGTCTCATCTCTCACCCAGCCTGCTTTCTGCTGAGCACACTGGCGGATTAATAGTCTTATTGGCCACATTGGTCATGCTAGGATCAGCCAAGTCTTCGCTTATTTCAATTAATGATATTGCAGAGAAGGAGTATTTACATTGCAGTATTTTGTCATGGTGGAACTTTATGCAATTAATCTGATGTGTTTTGACCTTAAACCATTAAAAATCAAATGAGAATATGGGCAGCTATTAGGTAATTATGACCATTGTGTTGTACTTATACACTACCTTATATAGAACTTCAGatttttattgtaatgtaataatgtgcacCCTTTGTAAAGCTGcattgaaacaataattattgtgaaaagcgctatgcAAATAAGCTTCACTATAAATTAATTGAACAGTACTATTAGTCTGCAAGGAtttgttaatttgattcaa
>TCONS_00023721
GAGCGCGCGGCTCTCTGTAACTGCAAGCGAGCACAGAAAGAGGCAAGTGCACGCGGGTAAAACATCATCACAAGACCGCGAAAAACGTTATTTTAGTGGCGTGGACCAAACACACGGAGCCTGTTGGGAATGTAATGTGGATTATTGCGCTTTGGGATATTTTTACGAAAATTGAGCTATTGTGCGCTAGATGAGGCAGAGTAACCACATGGACTACATTACCCACATGGCATCATGCAGACTGTGCTGGTTTccttaaatacaaaaaaagtccGACCTGGAGGACCTGTCTGGATGATTGAGGTCTGAGGAGATACTAGAAGAAAACAACACCTCAGCAGACACACAGAACCTCATCTGCTAGTCTTCTCAAGTCGATTCATTCCAGGAAGCGAGCAAGAAGAACCTGATTGTCGCCTGAAAGAGATTGGATTGTTGTGCAATGTCATTGGCCTTATGACTGTTATTTAAGACTGTTCTCCTTATTAAGTCCCTCTCCTCTTTTAGGATACTTTTTTTTTCCGTTTCACGCTGCGTTGACGATCTCACCTCTTCTCTAGTATCTCTGGGCATATCGTGGGATGTACTTTGGATTTACTGACCTTTGAACCAAAGCGAATTCAATGATTTCCTTCTGTTCAGGATAATAACCCCAAATCTCCAGCACTTTTACAATGAATTTCTTCAGATTTCCAGTCCAGTTGCAGCTGCTGATCAGTACTGTGCTTGGGCCCTGCTTGGGCCTGGAGTTTACAGGGTTGCAAGGCCAGTGGGCACGCTATCTCCGCTGGGACGCCAGCACCAGAAGTGACCTCAGCTTCCAGTTCAAAACAGACGTGTCCACTGCCTTAATCCTGTACTTTGACGATGGCGGCTTCTGCGACTTCCTGCAACTCATGGTGGTTGAGGGGAAGCTCCAATTGCAGTTTAGCATTGACTGCGCCGAGACCACTGTTGTATCGGACAAGCGAGTCAATGACAGCAGCTGGCATTCTGCCACCCTGAGCAGGTACAACCTGAGAACTGTGCTGGGTCTGGATGGAGTGAGCAAATGGGCCGAAGTGCGGCCACTGAGGCAGTACATGAAGATCGTTAGTGACCTCTTCCTGGGCGGAGTCCCTCAAGATATTCGCATTTCTGTGCTCACTCTCCCGACAGTGAAGGATCTTCCGCCGTTTAAGGGAATTATCAGGGAACTGAAGTACAATAGCAAGGAACCTATTCTACTTAGCAGCCAGAGGGTCCGCATGGACATCGAGGGGATCTGCATGGAGAACCCATGCGAAAACGGAGGGACGTGCTCTGTTGTAGATGGGGAACCACTTTGTGATTGTTCTAAGACGGAATATGTTGGCCGATTCTGCAACGAAGGTAAATATATGGTTTATATATCAAAGCAGATACAGTGTAAAATCTTTAAATTTATTGGCAAAGGTCTAACTCTACTTGCTGAAATGTGAATAATGCTTACCAGAATCCTACATCCTCAGCTGCTCCATGCTACTGAAGTTTGATTCTGAGGTCCTGGTTAATGACATCTCTTAACTTGCCTACAGAAAGCTGCCCTGTTCTGTGCATTTGGCAGGTGTTATTGTGCAGGGAAATTCTTGATCTGCCACCTCTATTCCCCCATCGCTTCTTACGATCAATTGAAATCGAATGTCATTGAAATGCTCTACTAGCAAAGCCTACGTTTTTACCTCTGTAAAGCACTAAGCTGTTTGTTTCTGGCAAGCGTTTTgcggttatgtgtgtgtgtgtgttaatcgcACCCTGCTGAGGAGGTGGGGTGTTACGAGGATGTTAAGGTGCCTTTTCAGATCCCTTGGTTGTTTTTCTGAAGTGGCCATTTTAGTTTCTCTGGGGATTTGAGGAGGCCATTTCACAGCTCTGGGTTTTGTTGTTGCACCTCTTCAACAGAGAATGAATCAGAGACGGGGGATAATTGCCTATTTTAAACATGTCAATTGCAATTCTTTATAATGTCATTACTGCTTTTCCCGGAGAGAGAATTTTATGGCCACCCAAGTCATTTCTTATACAGATCTTATGCTTTGTTCAACATTATTTTGGTATaataacaactaaataaaatttgC
>TCONS_00023722
TCTGAGCGCGCGGCTCTCTGTAACTGCAAGCGAGCACAGAAAGAGGCAAGTGCACGCGGGTAAAACATCATCACAAGACCGCGAAAAACGTTATTTTAGTGGCGTGGACCAAACACACGGAGCCTGTTGGGAATGTAATGTGGATTATTGCGCTTTGGGATATTTTTACGAAAATTGAGCTGTTCCTCTGCAGTGGGTTGATTGGGGGTTGCTGGTGGTACCCGTGCCCACTCTGGGATGCTGGATGAGGCCAGGTAGGAGTCTCATGCCTCCCTTTCACCGGCTGGCAGCCCAGGAGGAGAGCACCGGACGCTGATGTCATCCATTTTGGCCCATCTCTACCTCGCCCACACCTCCGCTCCACCACACGGATGCTCGACAGCAACCGTGTCACGTATGGAGCTGAGCGCGCTGAAATGGCGTGCGCCTCCTCCCTAAGCCTCCATGATATCATCGGGGTGCACTGGAGGACATTTTGTCGCAGCTCTTCTGGTGTAATGGCAGAGCGTAATTGAGGCACCTGTGGTAAAACCCAGCTTTGTGTGTCTGATGAATGGCTGGGCCTGTCGTCATTAACCTGCCCCCCTTCCACCATTACACCTCCCTCTCGCATTCGCTGACTTTTTAAGCTGGCTCCAAAATGCAGGGGTTTTATTTTGTTGTGGTGTCGTGTGCCGTTCCCAGTGGGGTGTGTCAATCACATATCAATGAGGACAATGATGTGCTCAGTTTAGCCTTTTCACCTCTCTCCTCCTCTATGCAAACTCTcgcttgac

Function

symbol description
nrxn3a Predicted to enable metal ion binding activity. Predicted to act upstream of or within angiogenesis and cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NRXN3 (neurexin 3).

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070206-9 Predicted to enable metal ion binding activity. Predicted to act upstream of or within angiogenesis and cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NRXN3 (neurexin 3).

Ensembl:

ensembl_id ENSDARG00000043746

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00023718 False 437 lncRNA 0.42 2 17257310 17265879
TCONS_00023719 False 4008 mRNA 0.51 18 17257441 17447899
TCONS_00023720 False 788 lncRNA 0.43 2 17268622 17270700
TCONS_00023721 False 2099 mRNA 0.45 2 17440017 17447899
TCONS_00023722 True 776 processed_transcript 0.53 2 17444375 17447902

Neighbor

gene id symbol gene type direction distance location
XLOC_012015 nrxn3a coding downstream 126368 16906523 ~ 17130942 (-)
XLOC_012014 CR381576.1 coding downstream 404905 16852272 ~ 16852405 (-)
XLOC_012013 NA coding downstream 516054 16733316 ~ 16741256 (-)
XLOC_012012 NA coding downstream 688319 16564878 ~ 16568991 (-)
XLOC_012011 tdp1 coding downstream 834656 16348830 ~ 16422654 (-)
XLOC_012017 adck1 coding upstream 43324 17491226 ~ 17759220 (-)
XLOC_012018 slirp coding upstream 315265 17763167 ~ 17764801 (-)
XLOC_012019 CU855697.2 coding upstream 331066 17778968 ~ 17779083 (-)
XLOC_012020 CU855697.1 coding upstream 431692 17879594 ~ 17879709 (-)
XLOC_012021 hhipl1 coding upstream 491193 17939095 ~ 17948587 (-)
XLOC_012008 NA non-coding downstream 1063690 16192479 ~ 16193620 (-)
XLOC_012006 NA non-coding downstream 1169375 16077835 ~ 16087935 (-)
XLOC_012022 NA non-coding upstream 577834 18025736 ~ 18030257 (-)
XLOC_012023 NA non-coding upstream 700880 18148782 ~ 18182558 (-)
XLOC_012024 BX465857.2 non-coding upstream 836047 18283949 ~ 18284063 (-)

Expression


Co-expression Network