XLOC_000121


Basic Information

Item Value
gene id XLOC_000121
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9946664 ~ 9951873 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00002811
GAGCGGCCGGACACTTGAGCGTCCCCCGGCAAACCCTGCGCTCAGCGGCCACAGAGCGCGCCAGTTTCCGCTCGTCTCTCCGGTTGCTGGGCGCCAAAACAAACTCACGCTCTGTTTGAGCAGAACACAATTACAGACGCGAGGGTAAATATTTGCTCAGAAAACACAGATCCACACGAGCGGAGGCTATAAATGAGCAAACCGCTAATTATCCATAACGAGAAACGGACAGCACGACTTCATGAGCCACATCCATCCAGCAGTGCACGTTTACAGGATGGCAGCAGGTGTGATCAGAAATCTAAGTAATCTGGGTTTGGCGAAGCCCTTCCCTCCCTGCTTCTTTCTGGCTGAGGATGAAGAGGAGACTGAGGAAGAGTATGAAGAGGACCTGAGAGAGGACAGTctggaggatgatgatgatgatgaaggaggAGCCAATCATGATGAAGAATCCCAGAGTTTTGATTCCTCCTCAAATAACAGTGAAACGACCACCCAGCTCCTGCGCTTCGCTGAGCTTATCAGTAGCGACGTCCAGCGATACTTCGGCCGGAGCACAGATCCCGACGCCTGTGACATTTACGCAGAGAGACCTTGTCCCAAAGTCAGCGGCCGCCAGCGCTACTATGCAGACTTCATAAAGGTGGCATCTTCAGGGCCGCCGGAGCAGCCGGAGCCACTGGGGCCCCTTGCGGAGCTCTTCCAGGAGGCTCAGAAGAAAGGCCGGGGGTTACCGATGAATCAGCGCCGCCTTCCTGTCAGCTTCTGGACGGAGCCTGTGGCACAGCAGCTCCATGGGTTAAGCGAAAACTGTAATTCAGACATGCAGGAGCCCTCGCTTGGCCTGATCCACAACACTGAGGGCTCCATTGGCATGTTCAGCACCGGCATGAGCAGCTCCAGCCTCTCCGGGACGCTCAGCAGCTCCAGCACTCCAGACTTCAGTGATTTACTTGCTCACTGGGCCACAGACAGAGACAATCCTGCTGAGTTCAGCTGCGACTACCAGATATCATAACCAATGCACAAAGAAGATCACATGCTTAaagagattcacccaaaaatgaacatttactcactattcacaTACAAtcagtggtttcaaacctttatgagtttctttcttttgttcaagGCAAAAGAAGAttgtttgaagaaagctgaaaacctgtaattgactgacttccatagtacactgttaacaatttcctgtagaatctacaagAACTTACTtgcagcagttcaccagtaacttactgcaaATCAATTACAGCCAAAATGCAAAAGCATTTACATcttgctgtatatatattttatgtaatgcaagataatgcaactttaaaatatagTAACACACTGCATAACTgtcatacagtaaaatacagttcatattacagttagaTACTGTATCATTTACAAAAATCcttaataggaaaaacaaatgcaagtTAATAATTAGGCCACGGGAttgcaacatttttaaaattttcttcTTTTGTGGTTAACAGAAAAAAGTTGTTCATAAAGCTTATGACAGAATTGAAAtgtttaagtgaactatccctgtaattACCCTGCAGGTACAGgatgtcaacattatgtcatatTGACGCTGTACACCAACATCGTGGGGatgttgaattttgtttggaaatgaaaatcaggttgatgtcagaacccaatgtcaggccaacgacaatgttcaacctaaaatcaacataaaatcaaccaacgttgtgtggacgttaccactttgacgtctatcagactttgaattttggtcactttccaacacaacctaaaatcaaccaaatatcaacgtaatttgaggTCATTATTGAATGTCACACTAACTTTGTctttagacgctgactagacattgaattgtgGTCACTTGGATTCATGagttaaatctaacctaatattaacgtcttatgatgttgcgTGCCTGCTCGGTAGCTTTTTgttctgttgttattattaatagtgcATGTCTGGTCAAATATTGAAACCACAAAACTGCAGAGAATGTTGtgactttttattatttcagtggTTTTCAAATGTTGTATGCCAACCCTGTTTAACACAGCTACAATGtgatgtttttataaaaatatatattttgcccAAGAGaatctgtatttattaatttgtgtaaGAATACTGATA

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00002811 True 2175 lncRNA 0.43 2 9946664 9951873

Neighbor

gene id symbol gene type direction distance location
XLOC_000120 NA coding upstream 32034 9886955 ~ 9914630 (+)
XLOC_000119 pmm2 coding upstream 79808 9860381 ~ 9866856 (+)
XLOC_000118 elfn1b coding upstream 234362 9557212 ~ 9712302 (+)
XLOC_000117 uncx4.1 coding upstream 652549 9290103 ~ 9294115 (+)
XLOC_000116 BX323038.1 coding upstream 661313 9277846 ~ 9285351 (+)
XLOC_000122 pdia2 coding downstream 2616 9954489 ~ 9966195 (+)
XLOC_000123 si:dkeyp-75b4.8 coding downstream 14511 9966384 ~ 9982114 (+)
XLOC_000124 si:dkeyp-75b4.10 coding downstream 42938 9994811 ~ 10000376 (+)
XLOC_000125 trim2b coding downstream 51320 10003193 ~ 10033113 (+)
XLOC_000126 fgb coding downstream 99890 10051763 ~ 10059496 (+)
XLOC_000111 NA non-coding upstream 814174 9129386 ~ 9132490 (+)
XLOC_000106 NA non-coding upstream 970242 8967479 ~ 8976422 (+)
XLOC_000105 NA non-coding upstream 980725 8950874 ~ 8965939 (+)
XLOC_000133 AL935188.1 non-coding downstream 411847 10363720 ~ 10363851 (+)
XLOC_000135 NA non-coding downstream 510171 10462044 ~ 10462882 (+)
XLOC_000136 NA non-coding downstream 665651 10617524 ~ 10617930 (+)
XLOC_000137 NA non-coding downstream 693391 10645264 ~ 10668028 (+)
XLOC_000138 NA non-coding downstream 693491 10645364 ~ 10680841 (+)

Expression


Co-expression Network