XLOC_012251 (colec11)


Basic Information

Item Value
gene id XLOC_012251
gene name colec11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 36516695 ~ 36529449 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024138
aatataatataatataatataatataatataactcttTAAATCAGTATGAAtccattctttttttcttttcttctggaTTTTTCCAGCCAATATTCCACCACATATTTACTGCCACCCTGTGCATTAACACACAAACTGCAGCATTTCCTTCCTCATCCCAAATGACCTTAAACTAAATAATCCCCAATGCAACATCAGTGTTACACTGCAGCACAATAAATAAAGTATACCCcaatgcaatgtaaaaaaaaacaacaacaaatgcacaTTTAGCATCATTTCTCCCCAAAATACGCATCTTAACAAAAACTTGAGAATGCTGGAACCCCCTCAGATGTTTAATTTGTGAGGAATGCGCTGTCAGTGACCCTGATGTTTCACATGGATTTATCTGAGAGAAGTGTTGCAGAGCTGCTTCTTATCTTTGTGTTTACTCGTTCTCACTGGCTCTCAggcctgtgtgtgtctgtgagatgaACCATTTCAGAGCGACCACCAGTGAGCAAACCTCCATTAACTCCCTCAGATCCAGATCCAGGCTGCTGCATATTATACAGTATAGTGCGCTTTGAAATTCAACACAAGGTAAGTCTATTTTATAAGCAATACTATGTCCTGCAGGTGGCAAAGACAACAACGGGACGACTCAAATGCTTGCTTTAAAGTCTGTGGTTACTGGAGACGTCAAGGTGCGAAGGTTTACACTTGAAAATTGACTTCTGAAATGAAGGTGATGGTTGAAATTGGTACTCTTTTTTTGATGTTTGTGGTTTTGGTATGACTGTCACAGCTTATGTTTGTATTTCCATAACCGGGGAGTTGTTGCGTGTTATTGAATCCgctaatgtgattttttttttgttgcattttatgAGTACCAAAGGCTTTGTGAAAGCCATAAAAGCGGCTGTTATGTTTTTCGATTGGCGAGGGATTGTAATTTGCGTTTGCTGTTTGATTGTAAATGAAcgtgaatgtttttgtttttgtttctaggATGGTTGGAGAGAAGCTGGTGGCTTACATGTTGGTCAGTGTGTTAGGTCTGGCACTATTGAGGTCAGTGTTTGGTCAGCATATGCCAGAAGAACCTTGCTCAGTGCAGATCCTCGTCCCTGGGCTCAAAGGTGAAGCAGGAGAGAAAGGAGAGAAAGGAGCACCTGGAAGGCCTGGGAGAGTCGGGCCATCAGGAGAGCAAGGTCCCCCTGGAGACAAAGGGCAAAAAGGCAGTCCAGGACGTTATGGAAAGATGGGTCCCACTGGGCCCAAAGGTTTAAAAGGTGATATGGGGGATCCAGGACCCAAGGGCCCAAATGGAGAGCCAGGCGTCCCCTGCGAGTGCGCACCCTTACGGAAAATGATTGGAGAAATGGATATTCAAGTGGTGCAATTAACCAATGAGCTGaagttcattaaaaatgCTGTCGCCGGCATCAAAGAGACAGACAGCAAGGTCTATCTGCTTGTGAAGGAGGAGAAGCGCTACCGGGAAGCGGAGGTGTTTTGTCAGGGCCGAGGTGGACACCTGGCTATGCCCAAAGATGCGGCAGCTAACAGAGCCATCGCCGGCTACGTGACTGACGCGGGCCTCAGTCGCGTGTACATCGGCATTAATGACCTGGAGCGAGAAGGCCACTTTGTTTATGTGGAGCGCTCACCCATGACCACTTTCAGCAGGTGGAGGGAGGGTGAGCCCAACAACGCGTACGACGACGAGGACTGTGTGGAGATGGTGTCTTCAGGAGAGTGGATTGATGTCGCTTGTCAACTCACCATGTACTTCGTGTGTGAGTTTGACAAGGACACCGTTTGAGCTTCACTGCGCATCTGTAGAGGGGGGAAAGTCAAGTGTTTAAAATACTCCAGTGGCAAATTTCAAAGAGAAAAGGCTACTTTTGTTATATCTATGGTATATGATGTGTTTTATGTATAGttgttaaaacaacaattaagtattatttttatgcaCTATATATTGTATTTTCCTGAAGTTTGGGTTTTGGAGATTTGAAATGTTCTAGTCTCTAATATCCAACAAGACTGGATTTATGTGATCCAATATACAGTTAAAcacaaatatatgttttatatttatatgattgCTAAATAGTTCTTCCAAaaacaggcccatagccagcctggtgaaagtggtgttttttttttcacgaaaagtggacctttttgcagttaattgcctcattttctatttaattatgagattcaaatactgcattttattgacattttaagcactgtttttagctgaattaacctgtcggatggtcatcataatcacactttttgatgtatcaaatatttactaaagatttagaatacagattttaaaatacaaattaattacattattaatcATTAAGAAAAAGATTTAATctgttaatgtttaaaaaaaaaacctgtagcctattgtcatttattaggaaaataacaaactggccagcaaaTTCAATTTTCCTATtccaataaaaagtaattaaaagatttagaataaacgttacttgtaaaatgttttctcaatttaaaaacaatacagtggtgaaagaagacttctcttacttagattgtgtgttttcttgcacagcttgatgaaaaatatttgttagcattggccaaaactagctagctgaagtcacaccgaagccacagccaacagaggattccacttagtcttaaagcctttttcgtgAGGGCTATtatcactatttatgatggcatagcagtcagaATAGGACAATTGAGCTCGTTATGGAagaaattctggacctttgtcagtgaggggtgggttttCCGTATCACCCCGAACCCtgtcacaagaaaaaaaaaaaaaaatcaaattgtcATAATTTACACAACCTTTacatgtttcaaacctttatgagttgctttgaatctgttgaacactaaataataatatattctgaataaatacaaaattttgggtgaactgtcccttttaatTTGCCATAATTTGAGTCTTTATTGCCACATGATCATTTAGAAATCATTCTGACATTTTTAttggattattatttttattatattattagaacATTTAAACAGAGTTGTACTaggtatttttgtggaaaccCTTTTTTGTAATATCTGAGAAATAGACCATAATACTGACGAGAAATACAGGTACTGCCATTTGTGAATATTACTGTACAGTACATGCCGCTTAAATGAATTTTAAGAAGGTTACTTGCATTTACTTTTAGGTATTTTTGTAAAACGCCAGACATAATTGTGAAAGTTATACGAATGTGAAAGTCATTTAAATTACTAAACTGCATTTAAATGTGATAATGAACTGTTTGTGTAATTATATGTGCTAATTTAAATTCCACTGATTTGTCCTTCTTTGTGTTTCCTTTTACTTGCTTTCTTTTCTGCCACTGGAATTTGAATTAgctgttttattaatttactgaACAGGTCAgaatactaatattattaaagCAAACTTAACTTGCATTATATTTTTCCTCTAGATGGAACTGCCAGATTGAGGTTagactttatatttttataatatccAAACACTGTTTATTTCTGCAATAAAATTACTGTCCCTGATTACCAAAAGT
>TCONS_00024139
ACTCGTTCTCACTGGCTCTCAggcctgtgtgtgtctgtgagatgaACCATTTCAGAGCGACCACCAGTGAGCAAACCTCCATTAACTCCCTCAGATCCAGATCCAGGCTGCTGCATATTATACAGTATAGTGCGCTTTGAAATTCAACACAAGgATGGTTGGAGAGAAGCTGGTGGCTTACATGTTGGTCAGTGTGTTAGGTCTGGCACTATTGAGGTCAGTGTTTGGTCAGCATATGCCAGAAGAACCTTGCTCAGTGCAGATCCTCGTCCCTGGGCTCAAAGGTGAAGCAGGAGAGAAAGGAGAGAAAGGAGCACCTGGAAGGCCTGGGAGAGTCGGGCCATCAGGAGAGCAAGGTCCCCCTGGAGACAAAGGGCAAAAAGGCAGTCCAGGACGTTATGGAAAGATGGGTCCCACTGGGCCCAAAGGTTTAAAAGGTGATATGGGGGATCCAGGACCCAAGGGCCCAAATGGAGAGCCAGGCGTCCCCTGCGAGTGCGCACCCTTACGGAAAATGATTGGAGAAATGGATATTCAAGTGGTGCAATTAACCAATGAGCTGaagttcattaaaaatgCTGTCGCCGGCATCAAAGAGACAGACAGCAAGGTCTATCTGCTTGTGAAGGAGGAGAAGCGCTACCGGGAAGCGGAGGTGTTTTGTCAGGGCCGAGGTGGACACCTGGCTATGCCCAAAGATGCGGCAGCTAACAGAGCCATCGCCGGCTACGTGACTGACGCGGGCCTCAGTCGCGTGTACATCGGCATTAATGACCTGGAGCGAGAAGGCCACTTTGTTTATGTGGAGCGCTCACCCATGACCACTTTCAGCAGGTGGAGGGAGGGTGAGCCCAACAACGCGTACGACGACGAGGACTGTGTGGAGATGGTGTCTTCAGGAGAGTGGATTGATGTCGCTTGTCAACTCACCATGTACTTCGTGTGTGAGTTTGACAAGGACACCGTTTGAGCTTCACTGCGCATCTGTAGAGGGGGGAAAGTCAAGTGTTTAAAATACTCCAGTGGCAAATTTCAAAGAGAAAAGGCTACTTTTGTTATATCTATGGTATATGATGTGTTTTATGTATAGttgttaaaacaacaattaagtattatttttatgcaCTATATATTGTATTTTCCTGAAGTTTGGGTTTTGGAGATTTGAAATGTTCTAGTCTCTAATATCCAACAAGACTGGATTTATGTGATCCAATATACAGTTAAAcacaaatatatgttttatatttatatgattgCTAAATAGTTCTTCCAAaaacaggcccatagccagcctggtgaaagtggtgttttttttttcacgaaaagtggacctttttgcagttaattgcctcattttctatttaattatgagattcaaatactgcattttattgacattttaagcactgtttttagctgaattaacctgtcggatggtcatcataatcacactttttgatgtatcaaatatttactaaagatttagaatacagattttaaaatacaaattaattacattattaatcATTAAGAAAAAGATTTAATctgttaatgtttaaaaaaaaaacctgtagcctattgtcatttattaggaaaataacaaactggccagcaaaTTCAATTTTCCTATtccaataaaaagtaattaaaagatttagaataaacgttacttgtaaaatgttttctcaatttaaaaacaatacagtggtgaaagaagacttctcttacttagattgtgtgttttcttgcacagcttgatgaaaaatatttgttagcattggccaaaactagctagctgaagtcacaccgaagccacagccaacagaggattccacttagtcttaaagcctttttcgtgAGGGCTATtatcactatttatgatggcatagcagtcagaATAGGACAATTGAGCTCGTTATGGAagaaattctggacctttgtcagtgaggggtgggttttCCGTATCACCCCGAACCCtgtcacaagaaaaaaaaaaaaaaatcaaattgtcATAATTTACACAACCTTTacatgtttcaaacctttatgagttgctttgaatctgttgaacactaaataataatatattctgaataaatacaaaattttgggtgaactgtcccttttaatTTGCCATAATTTGAGTCTTTATTGCCACATGATCATTTAGAAATCATTCTGACATTTTTAttggattattatttttattatattattagaacATTTAAACAGAGTTGTACTaggtatttttgtggaaaccCTTTTTTGTAATATCTGAGAAATAGACCATAATACTGACGAGAAATACAGGTACTGCCATTTGTGAATATTACTGTACAGTACATGCCGCTTAAATGAATTTTAAGAAGGTTACTTGCATTTACTTTTAGGTATTTTTGTAAAACGCCAGACATAATTGTGAAAGTTATACGAATGTGAAAGTCATTTAAATTACTAAACTGCATTTAAATGTGATAATGAACTGTTTGTGTAATTATATGTGCTAATTTAAATTCCACTGATTTGTCCTTCTTTGTGTTTCCTTTTACTTGCTTTCTTTTCTGCCACTGGAATTTGAATTAgctgttttattaatttactgaACAGGTCAgaatactaatattattaaagCAAACTTAACTTGCATTATATTTTTCCTCTAGATGGAACTGCCAGATTGAGGTTagactttatatttttataatatccAAACACTGTTTATTTCTGCAATAAAATTACTGTCCCTGATTACCAAAA

Function

symbol description
colec11 Predicted to enable several functions, including calcium ion binding activity; calcium-dependent carbohydrate binding activity; and monosaccharide binding activity. Involved in developmental process. Acts upstream of or within neural crest cell migration. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in extracellular space. Is expressed in head; hindbrain; liver; pronephric duct; and pronephric glomerulus. Human ortholog(s) of this gene implicated in 3MC syndrome 2. Orthologous to human COLEC11 (collectin subfamily member 11).

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0001755 neural crest cell migration biological_process
GO:0007275 multicellular organism development biological_process
GO:0002376 immune system process biological_process
GO:0001867 complement activation, lectin pathway biological_process
GO:0032502 developmental process biological_process
GO:0019730 antimicrobial humoral response biological_process
GO:0005576 extracellular region cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0070492 oligosaccharide binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0005537 mannose binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0042806 fucose binding molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0120153 calcium-dependent carbohydrate binding molecular_function

KEGG:

id description
ko04145 Phagosome
ko04131 Membrane trafficking
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-041114-11 Predicted to enable several functions, including calcium ion binding activity; calcium-dependent carbohydrate binding activity; and monosaccharide binding activity. Involved in developmental process. Acts upstream of or within neural crest cell migration. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in extracellular space. Is expressed in head; hindbrain; liver; pronephric duct; and pronephric glomerulus. Human ortholog(s) of this gene implicated in 3MC syndrome 2. Orthologous to human COLEC11 (collectin subfamily member 11).

Ensembl:

ensembl_id ENSDARG00000013266

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024138 False 3606 mRNA 0.38 6 36516695 36529449
TCONS_00024139 True 2760 mRNA 0.38 7 36516697 36529016

Neighbor

gene id symbol gene type direction distance location
XLOC_012250 NA coding downstream 2759 36482587 ~ 36513936 (-)
XLOC_012249 NA coding downstream 39961 36446514 ~ 36476734 (-)
XLOC_012248 AL929378.2 coding downstream 176116 35901065 ~ 36340579 (-)
XLOC_012247 sox11a coding downstream 634854 35878544 ~ 35881841 (-)
XLOC_012245 BX255944.2 coding downstream 670439 35554571 ~ 35846256 (-)
XLOC_012252 CR354585.1 coding upstream 105623 36635072 ~ 36635189 (-)
XLOC_012253 BX649242.1 coding upstream 144035 36673484 ~ 36675877 (-)
XLOC_012254 myo6b coding upstream 157645 36687094 ~ 36842267 (-)
XLOC_012255 senp6b coding upstream 319337 36848786 ~ 36860988 (-)
XLOC_012256 mapre3a coding upstream 337832 36867281 ~ 36896560 (-)
XLOC_012246 BX255944.1 non-coding downstream 898591 35617986 ~ 35618104 (-)
XLOC_012260 BX571720.1 non-coding upstream 420989 36950438 ~ 36950555 (-)
XLOC_012265 CR382330.1 non-coding upstream 779880 37309329 ~ 37309446 (-)
XLOC_012267 NA non-coding upstream 833575 37363024 ~ 37365357 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000062_01813674_01817188 COLEC11 coding CI01000062 null 1811072 ~ 1817220 (+)