XLOC_012255 (senp6b)


Basic Information

Item Value
gene id XLOC_012255
gene name senp6b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 36848786 ~ 36860988 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00024147
gacaGACCTTTCTAACAGTCAGTCTATAGACAATGAGACCACAGATGTCCTAAAACACAGTGTGAAGGACACTCAGTTGGAAGATTTTTATTCAGGTAACGTACATgttttttaactgatttatttatttatgtatgttttgcCTTTTATGAAGTAGACAAAAGAAATAAATGCgtatatgtaaaaatgtaacaaaagcAAAACATGTATGCAAGTTTTTCTTTTTCGTTTTGTAATTTCATGTATTACAGGTTACAAGCTTTTTTTTTCGCATAACAGATATCTTGGATCACAAGAAAAGCACTTTTAAAGAAAATGACAACACATCTCTGAAAATTCTGCGAAAATATAGAATGAGAGATGAGtttGGAAACCTCAATCCTCGTGTTAAAAGAAAAACCCCAGCTGCAAAAAAGAAAGAGCCAAACAGTCAAATCGCACAGAGGCTGAACAGTCTAATGCTCAACATAAGATGTCTCAAAGTTGGGACCTTGACCAAGACATTCGCAAGATCTGGCTCTCTGAGCACCCAGTGCACTtttacagtGGATTGCATTGAGATCAGTTCTGAAGCAGGACGAATAGAAGCATCAGATATTGTTGCTTGTGAGTGGTGCACTGTGCCACGGCTCCCGGCCCTTTTTCTGCAGACCACGTATGAAGCACGTCTTCATCTGCAGGTCCAGCTTGACATGCTTGAAGATGATTCAGAGCACTTTCAGAACAAGAATGAAAAGGAAACTTGTATCGTCCTCATCTTTGAGAATGAGCTCACGCTCCCAGAGCAAATCATACTTGAGGACATATTTACAGAAATCGGCATGCGTCATAACATCAGTGGCTTTCTTGTTAAGTTGCCATTTGAAGAAGCCAATAACAAACTGAAGGCGCAGATCTCTGCTCAAAAACAGCGAGCCTTGATGCCATTTCCACCTTCTCCTGATGCTCCCCGACATGAAATTGCAACCCTCAGCATCTCAGACAGTGATGAGAATGATTTGATGGAGGGCCATTCATCACCTGTACAGGATCTCAAAAAACTGCTCGTGTATCCCCCTTCTCCAGCAAAGGGTGGTATAACTGTCACGGAAGAAGACTTTTACTGCCTTGATGAAGGGGAATTTTTAAACGATGTGATAGTAGATTTCTATCTAAGGTATTTGGTCTGCAAGCAGCAGGAAAAAAAGGATACTACCCAGTACCATGTGTTCAGCTCTTTCTTCTTCAAGCACCTCACTCAGGGAAATCAAAAAAGGCATTCAGGAGCTACAAGTTTATCCCCTCAAGAGTGTCGACACGACAGGGTGAAAACTTGGACCAGGAATGTAAACCTTTTTGAGAAGGACTTTGTGTTTGTCCCCATTAATCAAATGTCTCACTGGTACCTTGCTGTCATCTGCTTCCCTGGCCAGATTTCACAGACCAGTGGTTTGGATCTTTCCCTCAATGAGCGAagacattcaaggcagtatcttTGTGCTCCATCTCCACCCAATCCAATGTCCCTCTTTTACTCTCCTGAATCCTCAAAGCAGCTCTCCAGATGGAGCCAATCCATAGATGACTTGGACCAGAGCTTTGAAATACTTTCAGATGACGAGGCTGAGGATGACTTGCAGGTGGTGACAAACAGATCGGTGCTAAACCGTGGCAGTGATGTGTCTAAAAAGCCATGTATCCTCATCATGGACTCCCTCACCTCCAGTGGAAGATCATCAGAGGTGCAGATACTCCAACAGTACTTGCAAGAGGAATGGAGGGTGAAAATGGGCTCTCAACAGAGTTTTGAAAAGATGCATGGATGGAGTCCCATCGTCCCAAAGCAGGATAACTATACAGACTGCGGTATCTACCTGCTGCAGTATGTGGAGAGCTTCCTGAAGgACCCACCTCAAGCTTTTCATCACAACATGGACTTGAAAGGCTGGTTTTCACAAAGAACAGTAAAAAGGAAGAGGTTGCAAATCAAAGAGCTCATTCTCAAACTACACAGACaacaataagattttttttttcatctccaaCTTATTATTACCACCTGTAATTCAGAAATAGGGTTAttctttactgtatttttgaaagCTAGAAGGTTAACTCGCATTACCTGCATGTCATTCTCCGCCTTGTCATCTGAAAGTATGCAGAAGCTCTTGTCTAAGTCATCTAAGAGGGACAAAATAAGGCATACTGTGGCTTTAATTACTGTAAAAGATTAATAATCTCCTAgaaatgttttaagcagcagaacTGTTTCTCACAATGAAATTAGGAAATGTTTCTTGGAGAACCAAATCAGTATATTagagattcacccaaaaatgaactgtCATCTTTGACTGCCTTGGTATCCCAGCTGTACTCTCCGTATTAtacagttattatttattattattatttaaactctTGCTGATTTTTCTTGCTGCTTTAAATGATTCATATAAAAATGAATTTAGAAAAATGAGTTCTTTGCTTTGTAAATGGATGATTTGTTGTTGAAAGCAATAAAAGTAATATCTATTAATAGAATGTATTAAAATAACTAGATGCTGAAATCACAtctgagttttatttattttatttttatttcaatttttttggtgaaaactcatttaaacatttttgacaTTTAGATTTAAAAGTGCAGTATTTCTTCTCCTATAAGGAAGTGCAAAAAgttctgcaggtttcttcaaaCACCTTTGTTCTGGTGTCCCCTTGGTCAGCCAAACGGTGAGTACAGTGTAAAACTCGGACCATTGGTCCATTGGAccgaggtgggttgttagccccacaataatgctcaacccccaacctggaggaccaggacatacacgcatacactacaaacaatttagcttacccaattcacctatagtgcatctctttgggcttgtgggggaaatcggagcatgtggaggaaacccatgccaacacggggtgaacatgcaaactccacaaagaaatgacaatgaaaccagcgaccttcttgctgtgagtgctaaccactgagccaccatgacacccCTCTTAAAATGTATTGCATTTCAAAAACTTAAGTTTTAGACTTTGAAAAGACTGAAATtcactgaagaattgtgttgtaggtcttaaatgcttttgaacaggtcttaattttgcttttgtccaagtaaagctactcaattaATCCTGTATAAAATTTCATTATTAATgttcttaaaaagtctttaattttacataatgaaacctgcagaaacccagtGAAAACCTAGTAACCATTACCTTCCACAAatttagtttttcctactatgaaagtcaacgcTTACCCGTATCTAACATTCTtataaatatctgcttttgtgtttaacagtgaAATAAAGAAACACTTGAattacttgagggtgagtaaatactgAGTAAAGTTTAATTTTAGAGCGAACATTAAGGAAGATTCATGTAAACGAATAGTTGTCATGGCAtattagaaattatatatatatatatatatatatat
>TCONS_00024146
gacaGACCTTTCTAACAGTCAGTCTATAGACAATGAGACCACAGATGTCCTAAAACACAGTGTGAAGGACACTCAGTTGGAAGATTTTTATTCAGGTAACGTACATgttttttaactgatttatttatttatgtatgttttgcCTTTTATGAAGTAGACAAAAGAAATAAATGCgtatatgtaaaaatgtaacaaaagcAAAACATGTATGCAAGTTTTTCTTTTTCGTTTTGTAATTTCATGTATTACAGGTTACAAGCTTTTTTTTTCGCATAACAGATATCTTGGATCACAAGAAAAGCACTTTTAAAGAAAATGACAACACATCTCTGAAAATTCTGCGAAAATATAGAATGAGAGATGAGtttGGAAACCTCAATCCTCGTGTTAAAAGAAAAACCCCAGCTGCAAAAAAGAAAGAGCCAAACAGTCAAATCGCACAGAGGCTGAACAGTCTAATGCTCAACATAAGATGTCTCAAAGTTGGGACCTTGACCAAGACATTCGCAAGATCTGGCTCTCTGAGCACCCAGTGCACTtttacagtGGATTGCATTGAGATCAGTTCTGAAGCAGGACGAATAGAAGCATCAGATATTGTTGCTTGTGAGTGGTGCACTGTGCCACGGCTCCCGGCCCTTTTTCTGCAGACCACGTATGAAGCACGTCTTCATCTGCAGGTCCAGCTTGACATGCTTGAAGATGATTCAGAGCACTTTCAGAACAAGAATGAAAAGGAAACTTGTATCGTCCTCATCTTTGAGAATGAGCTCACGCTCCCAGAGCAAATCATACTTGAGGACATATTTACAGAAATCGGCATGCGTCATAACATCAGTGGCTTTCTTGTTAAGTTGCCATTTGAAGAAGCCAATAACAAACTGAAGGCGCAGATCTCTGCTCAAAAACAGATTGCTATGCTTCATCTCGAAGAGGATGAACTTCCTGCCTCTAGTCAGCGAGCCTTGATGCCATTTCCACCTTCTCCTGATGCTCCCCGACATGAAATTGCAACCCTCAGCATCTCAGACAGTGATGAGAATGATTTGATGGAGGGCCATTCATCACCTGTACAGGATCTCAAAAAACTGCTCGTGTATCCCCCTTCTCCAGCAAAGGGTGGTATAACTGTCACGGAAGAAGACTTTTACTGCCTTGATGAAGGGGAATTTTTAAACGATGTGATAGTAGATTTCTATCTAAGGTATTTGGTCTGCAAGCAGCAGGAAAAAAAGGATACTACCCAGTACCATGTGTTCAGCTCTTTCTTCTTCAAGCACCTCACTCAGGGAAATCAAAAAAGGCATTCAGGAGCTACAAGTTTATCCCCTCAAGAGTGTCGACACGACAGGGTGAAAACTTGGACCAGGAATGTAAACCTTTTTGAGAAGGACTTTGTGTTTGTCCCCATTAATCAAATGTCTCACTGGTACCTTGCTGTCATCTGCTTCCCTGGCCAGATTTCACAGACCAGTGGTTTGGATCTTTCCCTCAATGAGCGAagacattcaaggcagtatcttTGTGCTCCATCTCCACCCAATCCAATGTCCCTCTTTTACTCTCCTGAATCCTCAAAGCAGCTCTCCAGATGGAGCCAATCCATAGATGACTTGGACCAGAGCTTTGAAATACTTTCAGATGACGAGGCTGAGGATGACTTGCAGGTGGTGACAAACAGATCGGTGCTAAACCGTGGCAGTGATGTGTCTAAAAAGCCATGTATCCTCATCATGGACTCCCTCACCTCCAGTGGAAGATCATCAGAGGTGCAGATACTCCAACAGTACTTGCAAGAGGAATGGAGGGTGAAAATGGGCTCTCAACAGAGTTTTGAAAAGATGCATGGATGGAGTCCCATCGTCCCAAAGCAGGATAACTATACAGACTGCGGTATCTACCTGCTGCAGTATGTGGAGAGCTTCCTGAAGgACCCACCTCAAGCTTTTCATCACAACATGGACTTGAAAGGCTGGTTTTCACAAAGAACAGTAAAAAGGAAGAGGTTGCAAATCAAAGAGCTCATTCTCAAACTACACAGACaacaataagattttttttttcatctccaaCTTATTATTACCACCTGTAATTCAGAAATAGGGTTAttctttactgtatttttgaaagCTAGAAGGTTAACTCGCATTACCTGCATGTCATTCTCCGCCTTGTCATCTGAAAGTATGCAGAAGCTCTTGTCTAAGTCATCTAAGAGGGACAAAATAAGGCATACTGTGGCTTTAATTACTGTAAAAGATTAATAATCTCCTAgaaatgttttaagcagcagaacTGTTTCTCACAATGAAATTAGGAAATGTTTCTTGGAGAACCAAATCAGTATATTagagattcacccaaaaatgaactgtCATCTTTGACTGCCTTGGTATCCCAGCTGTACTCTCCGTATTAtacagttattatttattattattatttaaactctTGCTGATTTTTCTTGCTGCTTTAAATGATTCATATAAAAATGAATTTAGAAAAATGAGTTCTTTGCTTTGTAAATGGATGATTTGTTGTTGAAAGCAATAAAAGTAATATCTATTAATAGAATGTATTAAAATAACTAGATGCTGAAATCACAtctgagttttatttattttatttttatttcaatttttttggtgaaaactcatttaaacatttttgacaTTTAGATTTAAAAGTGCAGTATTTCTTCTCCTATAAGGAAGTGCAAAAAgttctgcaggtttcttcaaaCACCTTTGTTCTGGTGTCCCCTTGGTCAGCCAAACGGTGAGTACAGTGTAAAACTCGGACCATTGGTCCATTGGAccgaggtgggttgttagccccacaataatgctcaacccccaacctggaggaccaggacatacacgcatacactacaaacaatttagcttacccaattcacctatagtgcatctctttgggcttgtgggggaaatcggagcatgtggaggaaacccatgccaacacggggtgaacatgcaaactccacaaagaaatgacaatgaaaccagcgaccttcttgctgtgagtgctaaccactgagccaccatgacacccCTCTTAAAATGTATTGCATTTCAAAAACTTAAGTTTTAGACTTTGAAAAGACTGAAATtcactgaagaattgtgttgtaggtcttaaatgcttttgaacaggtcttaattttgcttttgtccaagtaaagctactcaattaATCCTGTATAAAATTTCATTATTAATgttcttaaaaagtctttaattttacataatgaaacctgcagaaacccagtGAAAACCTAGTAACCATTACCTTCCACAAatttagtttttcctactatgaaagtcaacgcTTACCCGTATCTAACATTCTtataaatatctgcttttgtgtttaacagtgaAATAAAGAAACACTTGAattacttgagggtgagtaaatactgAGTAAAGTTTAATTTTAGAGCGAACATTAAGGAAGATTCATGTAAACGAATAGTTGTCATGGCAtattagaaattatatatatatatatatatatatat
>TCONS_00024148
ACCACTGAATCTGAATCTTTTTATTGAACAGATTCAAAAGCTTCGATTCATTGGGTCGAATCTAATTCTCCAAAGCTGCAGGTAACACCTGTCAATCATCAGAACGCTCGATGGCTGCATTTACGTTACGTCATGTCACGCTACGCCAAAGTTATGTTTTGTAAGCTGTTAGCAGGAGAGCTAAACACTCTAAAATGGTTCGTCCACTTGGGCAAAATCGTAAAAACAGTTTGAAAGTCAAACCTCTGAAGGGAAACGCCACCGGACTCAACCTGCTCGGGATGAGAACAATACTGGCTAACCAGACTCCGTCACTGGTCAAAACGAAGGGCAAACGCTTCATCTACGCACTGCAGTCCAGTTGGATGAAGGAATCAAGgacaGACCTTTCTAACAGTCAGTCTATAGACAATGAGACCACAGATGTCCTAAAACACAGTGTGAAGGACACTCAGTTGGAAGATTTTTATTCAGATATCTTGGATCACAAGAAAAGCACTTTTAAAGAAAATGACAACACATCTCTGAAAATTCTGCGAAAATATAGAATGAGAGATGAGtttGGAAACCTCAATCCTCGTGTTAAAAGAAAAACCCCAGCTGCAAAAAAGAAAGAGCCAAACAGTCAAATCGCACAGAGGCTGAACAGTCTAATGCTCAACATAAGATGTCTCAAAGTTGGGACCTTGACCAAGACATTCGCAAGATCTGGCTCTCTGAGCACCCAGTGCACTtttacagtGGATTGCATTGAGATCAGTTCTGAAGCAGGACGAATAGAAGCATCAGATATTGTTGCTTGTGAGTGGTGCACTGTGCCACGGCTCCCGGCCCTTTTTCTGCAGACCACGTATGAAGCACGTCTTCATCTGCAGGTCCAGCTTGACATGCTTGAAGATGATTCAGAGCACTTTCAGAACAAGAATGAAAAGGAAACTTGTATCGTCCTCATCTTTGAGAATGAGCTCACGCTCCCAGAGCAAATCATACTTGAGGACATATTTACAGAAATCGGCATGCGTCATAACATCAGTGGCTTTCTTGTTAAGTTGCCATTTGAAGAAGCCAATAACAAACTGAAGGCGCAGATCTCTGCTCAAAAACAGATTGCTATGCTTCATCTCGAAGAGGATGAACTTCCTGCCTCTAGTCAGCGAGCCTTGATGCCATTTCCACCTTCTCCTGATGCTCCCCGACATGAAATTGCAACCCTCAGCATCTCAGACAGTGATGAGAATGATTTGATGGAGGGCCATTCATCACCTGTACAGGATCTCAAAAAACTGCTCGTGTATCCCCCTTCTCCAGCAAAGGGTGGTATAACTGTCACGGAAGAAGACTTTTACTGCCTTGATGAAGGGGAATTTTTAAACGATGTGATAGTAGATTTCTATCTAAGGTATTTGGTCTGCAAGCAGCAGGAAAAAAAGGATACTACCCAGTACCATGTGTTCAGCTCTTTCTTCTTCAAGCACCTCACTCAGGGAAATCAAAAAAGGCATTCAGGAGCTACAAGTTTATCCCCTCAAGAGTGTCGACACGACAGGGTGAAAACTTGGACCAGGAATGTAAACCTTTTTGAGAAGGACTTTGTGTTTGTCCCCATTAATCAAATGTCTCACTGGTACCTTGCTGTCATCTGCTTCCCTGGCCAGATTTCACAGACCAGTGGTTTGGATCTTTCCCTCAATGAGCGAagacattcaaggcagtatcttTGTGCTCCATCTCCACCCAATCCAATGTCCCTCTTTTACTCTCCTGAATCCTCAAAGCAGCTCTCCAGATGGAGCCAATCCATAGATGACTTGGACCAGAGCTTTGAAATACTTTCAGATGACGAGGCTGAGGATGACTTGCAGGTGGTGACAAACAGATCGGTGCTAAACCGTGGCAGTGATGTGTCTAAAAAGCCATGTATCCTCATCATGGACTCCCTCACCTCCAGTGGAAGATCATCAGAGGTGCAGATACTCCAACAGTACTTGCAAGAGGAATGGAGGGTGAAAATGGGCTCTCAACAGAGTTTTGAAAAGATGCATGGATGGAGTCCCATCGTCCCAAAGCAGGATAACTATACAGACTGCGGTATCTACCTGCTGCAGTATGTGGAGAGCTTCCTGAAGgACCCACCTCAAGCTTTTCATCACAACATGGACTTGAAAGGCTGGTTTTCACAAAGAACAGTAAAAAGGAAGAGGTTGCAAATCAAAGAGCTCATTCTCAAACTACACAGACaacaataagattttttttttcatctccaaCTTATTATTACCACCTGTAATTCAGAAATAGGGTTAttctttactgtatttttgaaagCTAGAAGGTTAACTCGCATTACCTGCATGTCATTCTCCGCCTTGTCATCTGAAAGTATGCAGAAGCTCTTGTCTAAGTCATCTAAGAGGGACAAAATAAGGCATACTGTGGCTTTAATTACTGTAAAAGATTAATAATCTCCTAgaaatgttttaagcagcagaacTGTTTCTCACAATGAAATTAGGAAATGTTTCTTGGAGAACCAAATCAGTATATTagagattcacccaaaaatgaactgtCATCTTTGACTGCCTTGGTATCCCAGCTGTACTCTCCGTATTAtacagttattatttattattattatttaaactctTGCTGATTTTTCTTGCTGCTTTAAATGATTCATATAAAAATGAATTTAGAAAAATGAGTTCTTTGCTTTGTAAATGGATGATTTGTTGTTGAAAGCAATAAAAGTAATATCTATTAATAGAATGTATTAAAATAACTAGATGCTGAAATCACA

Function

symbol description
senp6b Predicted to enable SUMO-specific endopeptidase activity. Predicted to be involved in protein desumoylation; regulation of kinetochore assembly; and regulation of spindle assembly. Predicted to act upstream of or within proteolysis. Predicted to be active in cytoplasm and nucleus. Orthologous to human SENP6 (SUMO specific peptidase 6).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0090169 regulation of spindle assembly biological_process
GO:0016926 protein desumoylation biological_process
GO:0090234 regulation of kinetochore assembly biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0070139 SUMO-specific endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6330 Predicted to enable SUMO-specific endopeptidase activity. Predicted to be involved in protein desumoylation; regulation of kinetochore assembly; and regulation of spindle assembly. Predicted to act upstream of or within proteolysis. Predicted to be active in cytoplasm and nucleus. Orthologous to human SENP6 (SUMO specific peptidase 6).

Ensembl:

ensembl_id ENSDARG00000079992

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00024147 False 3493 mRNA 0.39 16 36848786 36860265
TCONS_00024146 False 3541 mRNA 0.39 17 36848786 36860265
TCONS_00024148 True 2800 mRNA 0.42 21 36849722 36860988

Neighbor

gene id symbol gene type direction distance location
XLOC_012254 myo6b coding downstream 6519 36687094 ~ 36842267 (-)
XLOC_012253 BX649242.1 coding downstream 172909 36673484 ~ 36675877 (-)
XLOC_012252 CR354585.1 coding downstream 213597 36635072 ~ 36635189 (-)
XLOC_012251 colec11 coding downstream 319337 36516695 ~ 36529449 (-)
XLOC_012250 NA coding downstream 334850 36482587 ~ 36513936 (-)
XLOC_012256 mapre3a coding upstream 6293 36867281 ~ 36896560 (-)
XLOC_012257 dpysl5a coding upstream 37886 36898874 ~ 36936856 (-)
XLOC_012258 BX571720.2 coding upstream 40802 36901790 ~ 36904838 (-)
XLOC_012259 dnmt3ab coding upstream 75930 36936918 ~ 37054959 (-)
XLOC_012260 BX571720.1 coding upstream 89450 36950438 ~ 36950555 (-)
XLOC_012249 NA non-coding downstream 372052 36446514 ~ 36476734 (-)
XLOC_012248 AL929378.2 non-coding downstream 508207 35901065 ~ 36340579 (-)
XLOC_012265 CR382330.1 non-coding upstream 448341 37309329 ~ 37309446 (-)
XLOC_012267 NA non-coding upstream 502036 37363024 ~ 37365357 (-)
XLOC_012269 CR382330.2 non-coding upstream 529015 37390003 ~ 37390117 (-)
XLOC_012271 NA non-coding upstream 907653 37768641 ~ 37771340 (-)

Expression


Co-expression Network