RNA id: TCONS_00024146


Basic Information

Item Value
RNA id TCONS_00024146
length 3541
RNA type mRNA
GC content 0.39
exon number 17
gene id XLOC_012255
representative False

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 36848786 ~ 36860988 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gacaGACCTTTCTAACAGTCAGTCTATAGACAATGAGACCACAGATGTCCTAAAACACAGTGTGAAGGACACTCAGTTGGAAGATTTTTATTCAGGTAACGTACATgttttttaactgatttatttatttatgtatgttttgcCTTTTATGAAGTAGACAAAAGAAATAAATGCgtatatgtaaaaatgtaacaaaagcAAAACATGTATGCAAGTTTTTCTTTTTCGTTTTGTAATTTCATGTATTACAGGTTACAAGCTTTTTTTTTCGCATAACAGATATCTTGGATCACAAGAAAAGCACTTTTAAAGAAAATGACAACACATCTCTGAAAATTCTGCGAAAATATAGAATGAGAGATGAGtttGGAAACCTCAATCCTCGTGTTAAAAGAAAAACCCCAGCTGCAAAAAAGAAAGAGCCAAACAGTCAAATCGCACAGAGGCTGAACAGTCTAATGCTCAACATAAGATGTCTCAAAGTTGGGACCTTGACCAAGACATTCGCAAGATCTGGCTCTCTGAGCACCCAGTGCACTtttacagtGGATTGCATTGAGATCAGTTCTGAAGCAGGACGAATAGAAGCATCAGATATTGTTGCTTGTGAGTGGTGCACTGTGCCACGGCTCCCGGCCCTTTTTCTGCAGACCACGTATGAAGCACGTCTTCATCTGCAGGTCCAGCTTGACATGCTTGAAGATGATTCAGAGCACTTTCAGAACAAGAATGAAAAGGAAACTTGTATCGTCCTCATCTTTGAGAATGAGCTCACGCTCCCAGAGCAAATCATACTTGAGGACATATTTACAGAAATCGGCATGCGTCATAACATCAGTGGCTTTCTTGTTAAGTTGCCATTTGAAGAAGCCAATAACAAACTGAAGGCGCAGATCTCTGCTCAAAAACAGATTGCTATGCTTCATCTCGAAGAGGATGAACTTCCTGCCTCTAGTCAGCGAGCCTTGATGCCATTTCCACCTTCTCCTGATGCTCCCCGACATGAAATTGCAACCCTCAGCATCTCAGACAGTGATGAGAATGATTTGATGGAGGGCCATTCATCACCTGTACAGGATCTCAAAAAACTGCTCGTGTATCCCCCTTCTCCAGCAAAGGGTGGTATAACTGTCACGGAAGAAGACTTTTACTGCCTTGATGAAGGGGAATTTTTAAACGATGTGATAGTAGATTTCTATCTAAGGTATTTGGTCTGCAAGCAGCAGGAAAAAAAGGATACTACCCAGTACCATGTGTTCAGCTCTTTCTTCTTCAAGCACCTCACTCAGGGAAATCAAAAAAGGCATTCAGGAGCTACAAGTTTATCCCCTCAAGAGTGTCGACACGACAGGGTGAAAACTTGGACCAGGAATGTAAACCTTTTTGAGAAGGACTTTGTGTTTGTCCCCATTAATCAAATGTCTCACTGGTACCTTGCTGTCATCTGCTTCCCTGGCCAGATTTCACAGACCAGTGGTTTGGATCTTTCCCTCAATGAGCGAagacattcaaggcagtatcttTGTGCTCCATCTCCACCCAATCCAATGTCCCTCTTTTACTCTCCTGAATCCTCAAAGCAGCTCTCCAGATGGAGCCAATCCATAGATGACTTGGACCAGAGCTTTGAAATACTTTCAGATGACGAGGCTGAGGATGACTTGCAGGTGGTGACAAACAGATCGGTGCTAAACCGTGGCAGTGATGTGTCTAAAAAGCCATGTATCCTCATCATGGACTCCCTCACCTCCAGTGGAAGATCATCAGAGGTGCAGATACTCCAACAGTACTTGCAAGAGGAATGGAGGGTGAAAATGGGCTCTCAACAGAGTTTTGAAAAGATGCATGGATGGAGTCCCATCGTCCCAAAGCAGGATAACTATACAGACTGCGGTATCTACCTGCTGCAGTATGTGGAGAGCTTCCTGAAGgACCCACCTCAAGCTTTTCATCACAACATGGACTTGAAAGGCTGGTTTTCACAAAGAACAGTAAAAAGGAAGAGGTTGCAAATCAAAGAGCTCATTCTCAAACTACACAGACaacaataagattttttttttcatctccaaCTTATTATTACCACCTGTAATTCAGAAATAGGGTTAttctttactgtatttttgaaagCTAGAAGGTTAACTCGCATTACCTGCATGTCATTCTCCGCCTTGTCATCTGAAAGTATGCAGAAGCTCTTGTCTAAGTCATCTAAGAGGGACAAAATAAGGCATACTGTGGCTTTAATTACTGTAAAAGATTAATAATCTCCTAgaaatgttttaagcagcagaacTGTTTCTCACAATGAAATTAGGAAATGTTTCTTGGAGAACCAAATCAGTATATTagagattcacccaaaaatgaactgtCATCTTTGACTGCCTTGGTATCCCAGCTGTACTCTCCGTATTAtacagttattatttattattattatttaaactctTGCTGATTTTTCTTGCTGCTTTAAATGATTCATATAAAAATGAATTTAGAAAAATGAGTTCTTTGCTTTGTAAATGGATGATTTGTTGTTGAAAGCAATAAAAGTAATATCTATTAATAGAATGTATTAAAATAACTAGATGCTGAAATCACAtctgagttttatttattttatttttatttcaatttttttggtgaaaactcatttaaacatttttgacaTTTAGATTTAAAAGTGCAGTATTTCTTCTCCTATAAGGAAGTGCAAAAAgttctgcaggtttcttcaaaCACCTTTGTTCTGGTGTCCCCTTGGTCAGCCAAACGGTGAGTACAGTGTAAAACTCGGACCATTGGTCCATTGGAccgaggtgggttgttagccccacaataatgctcaacccccaacctggaggaccaggacatacacgcatacactacaaacaatttagcttacccaattcacctatagtgcatctctttgggcttgtgggggaaatcggagcatgtggaggaaacccatgccaacacggggtgaacatgcaaactccacaaagaaatgacaatgaaaccagcgaccttcttgctgtgagtgctaaccactgagccaccatgacacccCTCTTAAAATGTATTGCATTTCAAAAACTTAAGTTTTAGACTTTGAAAAGACTGAAATtcactgaagaattgtgttgtaggtcttaaatgcttttgaacaggtcttaattttgcttttgtccaagtaaagctactcaattaATCCTGTATAAAATTTCATTATTAATgttcttaaaaagtctttaattttacataatgaaacctgcagaaacccagtGAAAACCTAGTAACCATTACCTTCCACAAatttagtttttcctactatgaaagtcaacgcTTACCCGTATCTAACATTCTtataaatatctgcttttgtgtttaacagtgaAATAAAGAAACACTTGAattacttgagggtgagtaaatactgAGTAAAGTTTAATTTTAGAGCGAACATTAAGGAAGATTCATGTAAACGAATAGTTGTCATGGCAtattagaaattatatatatatatatatatatatat

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0090169 regulation of spindle assembly biological_process
GO:0016926 protein desumoylation biological_process
GO:0090234 regulation of kinetochore assembly biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function
GO:0070139 SUMO-specific endopeptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6330 Predicted to enable SUMO-specific endopeptidase activity. Predicted to be involved in protein desumoylation; regulation of kinetochore assembly; and regulation of spindle assembly. Predicted to act upstream of or within proteolysis. Predicted to be active in cytoplasm and nucleus. Orthologous to human SENP6 (SUMO specific peptidase 6).

Ensembl:

ensembl_id ENSDART00000182786

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024141 lncRNA downstream 172909 36673484 ~ 36675877 (-) True XLOC_012253
TCONS_00024953 lncRNA downstream 362687 36482587 ~ 36486099 (-) False XLOC_012250
TCONS_00024135 lncRNA downstream 372052 36446514 ~ 36476734 (-) True XLOC_012249
TCONS_00024952 lncRNA downstream 384265 36446514 ~ 36464521 (-) False XLOC_012249
TCONS_00024951 lncRNA downstream 508213 36310866 ~ 36340573 (-) True XLOC_012248
TCONS_00024167 lncRNA upstream 431190 37291455 ~ 37299381 (-) True XLOC_012264
TCONS_00024954 lncRNA upstream 502759 37363024 ~ 37365357 (-) True XLOC_012267
TCONS_00024173 lncRNA upstream 527714 37387979 ~ 37395447 (-) True XLOC_012268
TCONS_00024955 lncRNA upstream 908376 37768641 ~ 37771340 (-) True XLOC_012271
TCONS_00024956 lncRNA upstream 1162878 38023143 ~ 38025926 (-) False XLOC_012273
TCONS_00024145 mRNA downstream 6519 36687173 ~ 36842267 (-) False XLOC_012254
TCONS_00024144 mRNA downstream 6519 36687173 ~ 36842267 (-) True XLOC_012254
TCONS_00024143 mRNA downstream 6805 36687100 ~ 36841981 (-) False XLOC_012254
TCONS_00024142 mRNA downstream 30610 36687094 ~ 36818176 (-) False XLOC_012254
TCONS_00024139 mRNA downstream 319770 36516697 ~ 36529016 (-) True XLOC_012251
TCONS_00024149 mRNA upstream 7016 36867281 ~ 36896560 (-) True XLOC_012256
TCONS_00024151 mRNA upstream 38609 36898874 ~ 36936856 (-) False XLOC_012257
TCONS_00024150 mRNA upstream 38609 36898874 ~ 36936856 (-) False XLOC_012257
TCONS_00024152 mRNA upstream 39337 36899602 ~ 36936649 (-) False XLOC_012257
TCONS_00024153 mRNA upstream 40950 36901215 ~ 36929332 (-) True XLOC_012257
TCONS_00024140 other downstream 213597 36635072 ~ 36635189 (-) True XLOC_012252
TCONS_00024130 other downstream 1230682 35617986 ~ 35618104 (-) True XLOC_012246
TCONS_00024124 other downstream 1610474 35228588 ~ 35238312 (-) True XLOC_012241
TCONS_00024114 other downstream 3135609 33699379 ~ 33713177 (-) False XLOC_012236
TCONS_00024113 other downstream 3143322 33691698 ~ 33705464 (-) False XLOC_012236
TCONS_00024159 other upstream 90173 36950438 ~ 36950555 (-) True XLOC_012260
TCONS_00024168 other upstream 449064 37309329 ~ 37309446 (-) True XLOC_012265
TCONS_00024169 other upstream 450397 37310662 ~ 37311810 (-) False XLOC_012266
TCONS_00024174 other upstream 529738 37390003 ~ 37390117 (-) True XLOC_012269
TCONS_00024188 other upstream 2127031 38987296 ~ 38987415 (-) True XLOC_012280