RNA id: TCONS_00024141


Basic Information

Item Value
RNA id TCONS_00024141
length 557
lncRNA type antisense
GC content 0.40
exon number 2
gene id XLOC_012253
representative True

Chromosome Information

Item Value
chromosome id NC_007128.7
NCBI id CM002901.2
chromosome length 53461100
location 36673484 ~ 36675877 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGTTCCAATCGACACAATCAATCCGTTTGTGAAAACAAGTTCGAGTTCAGTTGCTCTAAATGATTATACAGATTTGGaactttagaagaaaatatttatttaattaatcatgtGTGTACTTCCCCTTTAAGGGGATGTTGGTTTAATGACGCTCAGAAATTCGGAAGTTCTGGGTTTTTGAAAGAATTATGCTGCACCTAGCTCTGTAGGTTCATATGTCGATTTGTTAACCTCATAAGGATCGTTTGTAAATACATGAAGGCCTCCTACAAGCGCGCGGTGCTCGAAGGAAGATGATCATTAACGCTGTAGCGCGTGATACGATTTTAAAACATGATTATGGAAGCGCTCGACTATCTCAATATAATCTCCCACGGTGGATTGCAGCCTCAGCAGAAAACCAGTGAGATTCGCACGTCAAGGAATTTGTGAATATGGTTTTGCGAGTTGTCTGGGGATCTGGGAAAGGAATGACAGACTCTCATCAATCTTCAAGCAGTTTTTTTCATGGAGACTTGCCAAGTCTTGACAAACAAAGAAGCAAGGTAAAAACAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154428

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00024953 lncRNA downstream 187385 36482587 ~ 36486099 (-) False XLOC_012250
TCONS_00024135 lncRNA downstream 196750 36446514 ~ 36476734 (-) True XLOC_012249
TCONS_00024952 lncRNA downstream 208963 36446514 ~ 36464521 (-) False XLOC_012249
TCONS_00024950 lncRNA downstream 332905 36214510 ~ 36340579 (-) False XLOC_012248
TCONS_00024951 lncRNA downstream 332911 36310866 ~ 36340573 (-) True XLOC_012248
TCONS_00024167 lncRNA upstream 615578 37291455 ~ 37299381 (-) True XLOC_012264
TCONS_00024954 lncRNA upstream 687147 37363024 ~ 37365357 (-) True XLOC_012267
TCONS_00024173 lncRNA upstream 712102 37387979 ~ 37395447 (-) True XLOC_012268
TCONS_00024955 lncRNA upstream 1092764 37768641 ~ 37771340 (-) True XLOC_012271
TCONS_00024956 lncRNA upstream 1347266 38023143 ~ 38025926 (-) False XLOC_012273
TCONS_00024138 mRNA downstream 144035 36516695 ~ 36529449 (-) False XLOC_012251
TCONS_00024139 mRNA downstream 144468 36516697 ~ 36529016 (-) True XLOC_012251
TCONS_00024137 mRNA downstream 159548 36483393 ~ 36513936 (-) True XLOC_012250
TCONS_00024136 mRNA downstream 189697 36483287 ~ 36483787 (-) False XLOC_012250
TCONS_00024131 mRNA downstream 791643 35878544 ~ 35881841 (-) False XLOC_012247
TCONS_00024142 mRNA upstream 11217 36687094 ~ 36818176 (-) False XLOC_012254
TCONS_00024143 mRNA upstream 11223 36687100 ~ 36841981 (-) False XLOC_012254
TCONS_00024145 mRNA upstream 11296 36687173 ~ 36842267 (-) False XLOC_012254
TCONS_00024144 mRNA upstream 11296 36687173 ~ 36842267 (-) True XLOC_012254
TCONS_00024147 mRNA upstream 172909 36848786 ~ 36860265 (-) False XLOC_012255
TCONS_00024140 other downstream 38295 36635072 ~ 36635189 (-) True XLOC_012252
TCONS_00024130 other downstream 1055380 35617986 ~ 35618104 (-) True XLOC_012246
TCONS_00024124 other downstream 1435172 35228588 ~ 35238312 (-) True XLOC_012241
TCONS_00024114 other downstream 2960307 33699379 ~ 33713177 (-) False XLOC_012236
TCONS_00024113 other downstream 2968020 33691698 ~ 33705464 (-) False XLOC_012236
TCONS_00024159 other upstream 274561 36950438 ~ 36950555 (-) True XLOC_012260
TCONS_00024168 other upstream 633452 37309329 ~ 37309446 (-) True XLOC_012265
TCONS_00024169 other upstream 634785 37310662 ~ 37311810 (-) False XLOC_012266
TCONS_00024174 other upstream 714126 37390003 ~ 37390117 (-) True XLOC_012269
TCONS_00024188 other upstream 2311419 38987296 ~ 38987415 (-) True XLOC_012280

Expression Profile

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