CI01000304_11301321_11304134 (THSD1)


Basic Information

Item Value
gene id CI01000304_11301321_11304134
gene name THSD1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 11300878 ~ 11304432 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_11301321_11304134.mRNA
CAATAAAAGTGGCAAAAAAGAAAAAAAGTGCAATTTCTTCCAGGCCGGTAGTTAGCAGTCTTCTAAATTTTTTAGTGATCAGATATACAGTCCTGAGCCAAAGGAGGGCCACACTGAGACTTGAGGCTCTTTAGTGTTGGGCCAGCAAATAACCACCTAGAAACCACACTGAACAGCCTTGTAATTGCATAGCAGCATGCTAACAACTACTCAGGATGCCTTAGCAAACACATAGCAACACCCTGGCAACCACCACTGGTGAGTTTTGCATGGGCAAAGATTACTAACATTTTATTCGAAAATGTAAAAATCTACCTGCCTGGTCACTTTAAACTACTTTATGGAACATAGTAATACCACAGATGCAAAGTGTTCATTAACGTTTGCCTCCTATGTTTTAGGTCACTTAATTGGTTTTAATTTATATTTTCTTTCCCATAGCGATGGCTGGTATCCATCTCTGGCCGTCAATGCACATTGCCTTGAGCAATGCCAGTGTGTTTGTGGATTACAACACCGAAAGCAACTTCACCAACGACAGACTGACAGTGTCATTGATTGACATTGACAAGAATGAAACAGTGCTCTCCAGGTCGCTCTTTAACCAATCAGAAGGGTCACTGGAGTTTAACTGCTCCTGCTTCCTGTATGCAAGTAATTTCAGATTCAGACTTGAGCAGAAGCACAACATTGGTGTGTCTAACAGAAGTGCCATCTGGTGGTGGAGTCCTGTTCTGCATGTGCACTGGCCCACCTTTCACCTGGCTGTGGATCGTGGCAGCAACAACCGGAGCTCTAATGACATTAGGATTGGTGTGTACACTAATGACCACTTCCATTCTTGTTCTAGCAGCAAAGCTTCTCTCTATCTTGACGTCAGCTACCTTGAACAAGTCCAGATTGGGAGGAACACATTTGAGAAGGTGCAGAACCGGATAAGACACGATATCAAAGTAGTTAGGGCACAACATGTGGAGATGCCATGTGCCTCCCCTCTGACAGAGCGTGGCTTCATCAAGATCTCCCTAAAATCCCCTGTCACCCAGCAAGACATTAAATCCTCTGGTCCTCTTTACCCTTCCAGCATCTTCGCATACAAGCTTCATGTGGATAACATTTACAAAAGTGGATGTGAGGGAGCAGTGTCTGTCCGTCGAATCTCACCTCCCTGTACAGTTACAAATGGAAAAGTTCTGCTTTATAAGGAAGAGAGTAACAACATGGCCCCTACTTCTCACATGGCCTTCAACTTCCTCACGCAAGGGGAGAATGATACTGAGTTTAATTGCTCCATCTTTGACCCCGGCAAAAATAAGTACTGCTTCCATTTCACTCTCGTCTACAGTCAGGCTCCCAGTTTAGCACACACATGTGTGATTGTGCAAAGACATACAAAAATGTGGGGACCGTGGCAGCCATGGAGTGGTTGTAGTGTGACGTGTGGGGAAGGGGTGCGAGAGCGTGTCCGTGAATGTCTGCTGCCCTCTAGTGGTGGGATGCAATGCACTGGCATGGTTAGGGAGCAGTCTCACTGTTCGCTAGAAGACTGCACTGAAGAGCTTCCTCTTCCATCCCAGACACCACCGCCAGCTGTAAGCACGCCCCTAGCTGGGAATCTAGTGGTAGTGGCTGGGATTTCCCTGTGCCTGGCTGTGATTCTGGCCACCATCTTTATTACAGTGTGGAGAAAACTCTGCCGTGCTCCAAAGTGCAGCTCCATGCGCCGTGGCTCTCTGCACTCTCCCAATGGCCGAAAAAACTCTGATGAAGCTTCTATCTGTGGTCACAGCATGCAGAGACCCAGTTTCTCTGAAAGTCTCCAGGCAGCTCCCCTACAGAAGGGATTTACCTTGCCTGCCAAGCAGGGACCTTCGGACCGAGGTGTGTTGGCTTGTCAACAGAGCATGTCCCTTCCTCTTCCCCTTTCTCAAGACCCAGAGAGAATGTCTTCTTCTGGCCAAAAGATCCTTCCCCCTATTTTTGGCTATCGCTTAGCTCAGCAGCAGCTCAAGGAGATGAAGAAGAAGGGCTTAAAAGAGGCCACTAAAGTCTACCATGTGTCCCAGAGTCCAGTCGATGACACCATGCTAGAGGCAACAGCTTCAACCCCTGCCGGTCTAACTCCAGCGCCCCAAGAGCTTGACAGCCCGGAAGAGTCAAGCAGCAGCCACTTCCGCATAAGGTCTCCCTTTCCAGAACCTACGTGGTCTCCCAAAAACAATGCTTTATCAGATAGACAAAAGGTGGATTTGTTGCTGAGTCCGCCGAAGTCTGCAACCAGTGCCAACATCCGTCGTCTTGAGCGCACGGCAGACTGGGTAGAGATGGTAGAGCGCAGTAGAGTGCCCTACTCCAAGAATCCCAATTTCAGGAGAACCTCAAGTTTCCACGAGAACAACCAGCAGTTTCCCCTGTCCCGACCCTACCGAGAGAGAAGCATGACCCAGGTGACTCCTCGCCAAATACCAGAGGGGAGCTGTAGAAGCAGAACCTGGGAGCATACGCTTCCTGAACTTGAGGTCTGGTCTTGTTCCAGTCCTAGAATGACTGATAGCTCAGTGGACCACAGGAGAAGCCCATGGGTTGACACTCCTCCATCTCAATCAAACTCAAAAGATTCAGTTCCAGTGACACCAACAAAAGAGCCTTTGGTGGATCGTCATCATGTGGCTCGGAGCCCATCTTCTGCCCTGGACCGAGCTGAACGGGCAGAACAGAACTGGAGCAGAAGAGGTCCCTCGCCCATCCAGAGGAACATACTAGCCAGGAAGCTACGAGAGGCTAATTCATCTACCTGCCAAAGGCAACGCAGTTCCACATTCTCTACCTCAGACCAGCGCAGGGGACGCTGTCGCAGCCTTCCTCTCTCTGCGGACTACAGCAACTCCCCATATAGTCTCACAGAATCAGAGCAGCACATGATGGACATTTCTGGATACTTGGGTGAGGATGATGGAGTAGAAGTTCTGACTATTCATAAACTTACCTGAACGAACCTGCATTTGTCTGATGGAACCAAGTTTTAATGGAATGAAGCAAGTTATTTTGCTCCATGTGGACCTGCATTTCAGATTTTGGAAGCTTTTTGTATCAGACTTCAGATGAAATCTATGATCAGTTTTAATTTTATTTATGGGGGTTTGACTATTAATTTGAAAAGCCGTTTTTGATACCACACAAACCACCATCATAGACATTATACAGTATCCATATCACAAGAATATTTTGTACACCTTTGGATTTGTTTGTACACTGGAAAATGTGAACTCTCAGGTTTTACATATGAAA

Function

symbol description
thsd1 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell periphery. Is expressed in somite and vasculature.

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_11301321_11304134.mRNA True 3288 mRNA 0.47 3 11300878 11304432

Neighbor

gene id symbol gene type direction distance location
CI01000304_11288992_11297645 VPS36 coding upstream 2729 11288992 ~ 11298149 (+)
CI01000304_11264394_11268134 SLC46A3 coding upstream 32744 11264394 ~ 11268134 (+)
CI01000304_11215537_11253484 MTUS2A coding upstream 47297 11214937 ~ 11253581 (+)
CI01000304_11170412_11182604 SLC7A1 coding upstream 118237 11169866 ~ 11182641 (+)
CI01000304_11140964_11155540 PAXBP1 coding upstream 144986 11140964 ~ 11155892 (+)
CI01000304_11308263_11317998 TPTE2, TPTE coding downstream 2616 11307048 ~ 11318063 (+)
CI01000304_11318496_11322260 NA coding downstream 14004 11318436 ~ 11322489 (+)
CI01000304_11323923_11325889 NA coding downstream 19063 11322230 ~ 11325905 (+)
CI01000304_11449463_11453214 NA coding downstream 144534 11448966 ~ 11453315 (+)
CI01000304_11570457_11574856 CHORDC1 coding downstream 266025 11570457 ~ 11575290 (+)
G425044 NA non-coding upstream 19671 11280963 ~ 11281207 (+)
G425081 NA non-coding upstream 20011 11280527 ~ 11280867 (+)
G425048 NA non-coding upstream 91853 11192185 ~ 11209025 (+)
G425073 NA non-coding upstream 163170 11137389 ~ 11137708 (+)
G425027 NA non-coding upstream 178704 11116120 ~ 11122174 (+)
G425085 NA non-coding downstream 17499 11321931 ~ 11321987 (+)
G425030 NA non-coding downstream 25236 11329668 ~ 11338444 (+)
G425036 NA non-coding downstream 42847 11347279 ~ 11355129 (+)
G425049 NA non-coding downstream 43621 11348053 ~ 11350064 (+)
G425273 NA non-coding downstream 128348 11432780 ~ 11433041 (+)
CI01000304_10555326_10571933 NA other upstream 745174 10555216 ~ 10572164 (+)
G424251 NA other upstream 1107983 10188822 ~ 10189404 (+)
G424246 NA other upstream 1173556 10116343 ~ 10127322 (+)
CI01000304_09564068_09565679 HRH2B other upstream 1735305 9561005 ~ 9565778 (+)
G423614 NA other upstream 2351456 8949036 ~ 8949422 (+)
G425718 NA other downstream 1124273 12436554 ~ 12436605 (+)
CI01000304_13578347_13595075 NA other downstream 2252019 13578049 ~ 13595097 (+)
G426312 NA other downstream 3025616 14330048 ~ 14330886 (+)
G426828 NA other downstream 3644458 14948890 ~ 14950592 (+)
G427860 NA other downstream 4581022 15885454 ~ 15889591 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002145 thsd1 coding NC_007121.7 CM002894.2 24684799 ~ 24686503 (+)