XLOC_002145 (thsd1)


Basic Information

Item Value
gene id XLOC_002145
gene name thsd1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24684799 ~ 24686503 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00004151
ATGATACCATATTATTTCTTTGAAGAAATGTGGGGACCGTGGCAGGCATGGAGTGGTTGTAGTGTGACTTGTGGGGAAGGTGTGCGAGAGCGTGTCCGTGAATGTctgctgccctctagtggtgGGATACAATGCACTGGCATGGTTAGGGAGCAGTCACACTGTTCACTAGAAGACTGCACTGaggagattCCCCCTCCACCAGTCAGCCCTCCACCAGCTGTGAGCACACCTCTAACTAGTAATCTAGTGGTAGTGTCTGGGATCGCTCTTTGCCTGGCTGTGATCCTGGCCACCATTTTTGTTACAGTGTGGCGAAAACTGTGTCGTGCACCAAAATGCAGCTCTATGCGCCGTGGATCTCTGCACTCTCCTAGCGGCAGAAAGAACTCTGATCAGGCCTCTATCTGTGGTCACAGCATGCAGAGGCCCAGTTTCTCAGAAAGTCTCCAGGCAGCTCCCCTACAGAAGGGATTTACCTTACCTGCTAAACAGGGACCATCAAACCGAGGTGTATTGGCTCATCAACAGAGCATGTCCCTTCCTCTTCCCCATCCACAAGACCCAGAGAGGATGTCTCCTTCTGGCCAAAAGATCATTCCACCCCTTTTTGGCTACCGCTTAGCTCAACAGCAGCTCAAGGAAATGAAGAAGAAAGGCTTAAAAGAGACTACTCAAGTCTACCATGTGTCCCAAAGTCCAGTGGATGACACCATGCTAGAAGCAACGGCTTCAGCTGGTCTAACTCCTGTGCCCCAAGAATTTGACAGTCCAGAGGAGTCAAGCAGTAGCCACTTCCGCATAAGGTCTACCTTTCCAGAACCCACATGGCATTCCAAAAACAGTACCTTGTCAGATAGACAAAAGATAGACATGTTACATAATCCTTCGAAGTCTGCATTTAGTGCCAGCTCATGTCGTCTTGAGCGCACTGCAGACTGGGTTGAGATGGTAGAGCGCAGCAGAGTACCATATTCCAAGAATACCAATTTCAGGAGGACTTCAAGCTTCAATGAGACCAACCAGCAGCCATTTCTCCCATCTCGGCCATACAGAGAAAGAAGCATGACCCAGGTGACCCCTCGGCAACTGCCTGAGGGCAGCTGTAGAAGCAGACCCTGGGAACATACGCTTCCTGAACTTGAGGTCTGGTCTTGTTCCAGTCCTAGGATGACTGAAAGCTCAGTGGACAACAGGAGAAGACCATGGGTTGACACACCCCCATCACAGTCAAATTCAAAAGATTCAGCTCCAGCGACACCAACAAAAGAGCCCTTGGTGGATCGTCATCACGGGGCCCGGAGCCCATCTTCTGCACTGGACCGTGCTGAAAGAGCAGAGCAgaactggagcaaaagaggcccCTCACCCATCCAGAGGAACATACTAGCAAGGAAGCTACGAGAGGCGAATTCCTCTACCGGCCAAAGGCAACGCAGTTCCACATTTTCTACCTCAGAGCAGCGTAGGGGACGCTGTCGCAGCCTTCCTCTCTCTGCAGACTACAGCAACTCTCCATATAGTCTCACAGAGTCAGAACAACGCATGATGGACATTTCTGGATACTTGGGTGAAGATGATGGCGTAGAGGTTCTGACTATTCATAAGCTTACCTGA

Function

symbol description
thsd1 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell periphery. Is expressed in somite and vasculature.

GO: NA

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

Ensembl:

ensembl_id ENSDARG00000112294

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00004151 True 1617 mRNA 0.51 2 24684799 24686503

Neighbor

gene id symbol gene type direction distance location
XLOC_002143 vps36 coding upstream 1029 24643079 ~ 24683770 (+)
XLOC_002144 NA coding upstream 29615 24650863 ~ 24655184 (+)
XLOC_002142 slc46a3 coding upstream 43399 24627683 ~ 24641400 (+)
XLOC_002141 mtus2a coding upstream 62482 24504292 ~ 24622317 (+)
XLOC_002140 paxbp1 coding upstream 191476 24422017 ~ 24493323 (+)
XLOC_002146 tpte coding downstream 4031 24690534 ~ 24707956 (+)
XLOC_002147 NA coding downstream 128801 24815304 ~ 24819159 (+)
XLOC_002148 NA coding downstream 148256 24834759 ~ 24835445 (+)
XLOC_002149 chordc1b coding downstream 518123 25204626 ~ 25213025 (+)
XLOC_002150 grm5a coding downstream 533225 25219728 ~ 25272236 (+)
XLOC_002139 NA non-coding upstream 272774 24404690 ~ 24412025 (+)
XLOC_002138 CT573163.1 non-coding upstream 286128 24397098 ~ 24398671 (+)
XLOC_002136 NA non-coding upstream 309639 24316853 ~ 24375160 (+)
XLOC_002137 CU467963.3 non-coding upstream 330933 24353750 ~ 24353866 (+)
XLOC_002154 NA non-coding downstream 1001131 25687634 ~ 25702407 (+)
XLOC_002156 NA non-coding downstream 1075700 25762203 ~ 25765571 (+)
XLOC_002158 BX530083.1 non-coding downstream 1277781 25964284 ~ 25964399 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_11301321_11304134 THSD1 coding CI01000304 null 11300878 ~ 11304432 (+)