XLOC_002156


Basic Information

Item Value
gene id XLOC_002156
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 25762203 ~ 25765571 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005900
cagaaattgatttatttttttgctacatTGAGACTTTGAAATTTATACAAAAAAGTATTGTCATGAAAGATGTaattctaaaaacatttttttttgaaaatgtccaTAAAAATGAACTTAGAAACCAGAAATAAATGGACAGTTATTGgacataatttaaaacaaacacaacagcCAAAGCTTTGCTCAGCCTTAAAGAtatattaaaaatgcattcatGTCTCTGAACGCAAGCACCACAAAATATCACGACAAGCTCAGTGACAAGgcttatacactatatatattcaGAGAAACAATATAAAcagcttaaaaacaaacaaaacccacCAATGTCTTTTTTTAACCACCATCATTTCAAGTACCCCTTATCAGAACTGAAGTGGGGTGTTTATGCCACACAAATCCAAGATATTACTGCACATTggtttttttaatgtgtaaacaTTCGATGCGGATTGTGTATTTTCAGGACAAAAACACACTCTTCTACAACACTGTCATTCACCTAAACTGGATCTCAGGGTCTCCATTCATCTCACTGTGTGGGTTTGGTGGGATGTCTGACCAGTCTTGCTCTTCGTCTTGATCCTGTGGTTTAAtccacacacgcCTTGTAGTTGTCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005900 True 627 lncRNA 0.35 2 25762203 25765571

Neighbor

gene id symbol gene type direction distance location
XLOC_002155 ugt5d1 coding upstream 33459 25726694 ~ 25728744 (+)
XLOC_002154 NA coding upstream 59796 25687634 ~ 25702407 (+)
XLOC_002153 bach1b coding upstream 377194 25369254 ~ 25385009 (+)
XLOC_002152 map3k7cl coding upstream 393030 25355308 ~ 25369173 (+)
XLOC_002151 rab38b coding upstream 478594 25272355 ~ 25283609 (+)
XLOC_002157 ufm1 coding downstream 182375 25947946 ~ 25962058 (+)
XLOC_002158 BX530083.1 coding downstream 198713 25964284 ~ 25964399 (+)
XLOC_002159 frem2a coding downstream 216641 25982212 ~ 26116636 (+)
XLOC_002160 trim47 coding downstream 352551 26118122 ~ 26128179 (+)
XLOC_002161 NA coding downstream 503489 26269060 ~ 26273148 (+)
XLOC_002148 NA non-coding upstream 926758 24834759 ~ 24835445 (+)
XLOC_002147 NA non-coding upstream 943044 24815304 ~ 24819159 (+)
XLOC_002144 NA non-coding upstream 1107019 24650863 ~ 24655184 (+)
XLOC_002139 NA non-coding upstream 1350178 24404690 ~ 24412025 (+)
XLOC_002162 BX530069.2 non-coding downstream 540658 26306229 ~ 26306343 (+)
XLOC_002164 NA non-coding downstream 798650 26564221 ~ 26564521 (+)
XLOC_002167 NA non-coding downstream 863222 26628793 ~ 26629282 (+)

Expression


Co-expression Network