XLOC_002154


Basic Information

Item Value
gene id XLOC_002154
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 25687634 ~ 25702407 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005899
CTGGATGCGTTGCTAGGAAACAGGGGTCCGAAAACCCTCTCAGATTTGTTCTCTGCTATGGGTTCTGAAGCTTCCGAGTCTGCTGTAGCTGCAGCAGAAGGTGCTGGAACATCTGGCTTGGCTTCAGCAAGTTCTTTAGTAGGGTTTGCACTGGGCTCGTTGGTATTTGCTGAGAGTCTCTCATTGGGTTCCTCGCCGGCCAGACCCAATCGATCGAGTCTATCGTCGCGGTCCCAGCGTGTGCTCCTCTCTCTGCTCCCTGCGGGCCGCTTGGTCCGTTCTTCACCATCGCGGCCTCGTTCCCGCTCTCCAGTATCGCGTCCTCGTTCCCTCTCTCCACCTTCGCGTCCTCGTTCCCGCTCTCCACCATCGCGTCCTCGTTCCCGCTCTCCACCATCGCGTCCTCGTTCCCTCTCTCCACCATCACGTCCTCGTTCCCTCTCTCCACCATCGCGTCCTCTTTCCCTCTCTCCACCATCGCGTCCTCGTTCCCTCTCTCCACCATCACGTCCTCGTTCTCCATCTGGACTTCTCCTCCAGCGTTCCTCCCTGCGTTCTCTTTCCCACCCACCTGGTTTCTCTGGCTCCTCGTGCCATCCTCCAAACCGCTCACGTCCATCTGGTCTTTCCCCACCACGTCCCTCACCAAAAGGCCGTCGTCCTCCAAACCAGTCCTGCTCTCGGCCTCTTCCTAATCCGGGACGTTCTCCTCTAAAAGGTCGAGCCTCATGATCATTTGGCCCCTCAGGCCTTGGTAAGCTCGGCCTCATAAAGTGAGGTCCGGGAGGTGGGAACGGTCCCCGGATGCCATGAGGTGGAGGAGGCATGCTGAAACCACCCGGTGGAGGTTCGCGGTGCATCATctgaggtggacccctgggtggcaTCATCTGTGGTGGCATGGGTGGCATGCCTGCCCGAGGTGGGGGAATGGGGAATCGCTGCATGTGCGGAGGTGGCATCCCCGGGGGCCGCTGAAGAGGCATCATACCTGGCCTTGTGCCAAGAAGACCAGGAGGAGACTGCATGCCCATCCCTGGTGGAGCTCCAGGAGGCACCTG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0006606 protein import into nucleus biological_process
GO:0016071 mRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0006354 DNA-templated transcription, elongation biological_process
GO:0051170 import into nucleus biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006396 RNA processing biological_process
GO:0006397 mRNA processing biological_process
GO:0034504 protein localization to nucleus biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0032786 positive regulation of DNA-templated transcription, elongation biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0071011 precatalytic spliceosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:1990234 transferase complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0016604 nuclear body cellular_component
GO:0016607 nuclear speck cellular_component
GO:0008023 transcription elongation factor complex cellular_component
GO:0008024 cyclin/CDK positive transcription elongation factor complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005684 U2-type spliceosomal complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0032806 carboxy-terminal domain protein kinase complex cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0071005 U2-type precatalytic spliceosome cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0061575 cyclin-dependent protein serine/threonine kinase activator activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005899 True 1061 lncRNA 0.60 2 25687634 25702407

Neighbor

gene id symbol gene type direction distance location
XLOC_002153 bach1b coding upstream 302625 25369254 ~ 25385009 (+)
XLOC_002152 map3k7cl coding upstream 318461 25355308 ~ 25369173 (+)
XLOC_002151 rab38b coding upstream 404025 25272355 ~ 25283609 (+)
XLOC_002150 grm5a coding upstream 415398 25219728 ~ 25272236 (+)
XLOC_002149 chordc1b coding upstream 474609 25204626 ~ 25213025 (+)
XLOC_002155 ugt5d1 coding downstream 24287 25726694 ~ 25728744 (+)
XLOC_002156 NA coding downstream 59796 25762203 ~ 25765571 (+)
XLOC_002157 ufm1 coding downstream 245539 25947946 ~ 25962058 (+)
XLOC_002158 BX530083.1 coding downstream 261877 25964284 ~ 25964399 (+)
XLOC_002159 frem2a coding downstream 279805 25982212 ~ 26116636 (+)
XLOC_002148 NA non-coding upstream 852189 24834759 ~ 24835445 (+)
XLOC_002147 NA non-coding upstream 868475 24815304 ~ 24819159 (+)
XLOC_002144 NA non-coding upstream 1032450 24650863 ~ 24655184 (+)
XLOC_002139 NA non-coding upstream 1275609 24404690 ~ 24412025 (+)
XLOC_002138 CT573163.1 non-coding upstream 1288963 24397098 ~ 24398671 (+)
XLOC_002161 NA non-coding downstream 566653 26269060 ~ 26273148 (+)
XLOC_002162 BX530069.2 non-coding downstream 603822 26306229 ~ 26306343 (+)
XLOC_002164 NA non-coding downstream 861814 26564221 ~ 26564521 (+)

Expression


Co-expression Network